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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFR] human gut metagenome; human gut
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182835844
OKFR01001822
[OKFR] human gut metagenome; human gut
2
75
+
Val
TAC
[ENA]
¢þ
>WENV182835836
OKFR01001057
[OKFR] human gut metagenome; human gut
59
141
+
Tyr
GTA
[ENA]
¢þ
>WENV182835778
OKFR01000006
[OKFR] human gut metagenome; human gut
78
150
+
Val
TAC
[ENA]
¢þ
>WENV182835845
OKFR01001891
[OKFR] human gut metagenome; human gut
87
160
+
Glu
TTC
[ENA]
¢þ
>WENV182835842
OKFR01001339
[OKFR] human gut metagenome; human gut
94
18
-
Pro
CGG
[ENA]
¢þ
>WENV182835847
OKFR01001908
[OKFR] human gut metagenome; human gut
112
39
-
Thr
TGT
[ENA]
¢þ
>WENV182835832
OKFR01000614
[OKFR] human gut metagenome; human gut
146
71
-
Pro
GGG
[ENA]
¢þ
>WENV182835779
OKFR01000006
[OKFR] human gut metagenome; human gut
153
225
+
Asp
GTC
[ENA]
¢þ
>WENV182835837
OKFR01001057
[OKFR] human gut metagenome; human gut
156
229
+
Trp
CCA
[ENA]
¢þ
>WENV182835816
OKFR01000041
[OKFR] human gut metagenome; human gut
184
111
-
Gly
TCC
[ENA]
¢þ
>WENV182835829
OKFR01000486
[OKFR] human gut metagenome; human gut
205
132
-
Arg
ACG
[ENA]
¢þ
>WENV182835846
OKFR01001891
[OKFR] human gut metagenome; human gut
210
286
+
Asp
GTC
[ENA]
¢þ
>WENV182835838
OKFR01001057
[OKFR] human gut metagenome; human gut
232
305
+
His
GTG
[ENA]
¢þ
>WENV182835780
OKFR01000006
[OKFR] human gut metagenome; human gut
250
322
+
Lys
TTT
[ENA]
¢þ
>WENV182835815
OKFR01000041
[OKFR] human gut metagenome; human gut
289
207
-
Leu
GAG
[ENA]
¢þ
>WENV182835839
OKFR01001057
[OKFR] human gut metagenome; human gut
316
387
+
Gln
TTG
[ENA]
¢þ
>WENV182835848
OKFR01001913
[OKFR] human gut metagenome; human gut
320
246
-
Arg
TCT
[ENA]
¢þ
>WENV182835781
OKFR01000006
[OKFR] human gut metagenome; human gut
327
410
+
Leu
TAG
[ENA]
¢þ
>WENV182835840
OKFR01001057
[OKFR] human gut metagenome; human gut
393
466
+
Cys
GCA
[ENA]
¢þ
>WENV182835843
OKFR01001615
[OKFR] human gut metagenome; human gut
462
544
+
Tyr
GTA
[ENA]
¢þ
>WENV182835835
OKFR01000854
[OKFR] human gut metagenome; human gut
686
759
+
Lys
TTT
[ENA]
¢þ
>WENV182835841
OKFR01001057
[OKFR] human gut metagenome; human gut
765
848
+
Leu
CAA
[ENA]
¢þ
>WENV182835833
OKFR01000653
[OKFR] human gut metagenome; human gut
798
724
-
Ile2
CAT
[ENA]
¢þ
>WENV182835834
OKFR01000675
[OKFR] human gut metagenome; human gut
1163
1089
-
Pro
TGG
[ENA]
¢þ
>WENV182835789
OKFR01000011
[OKFR] human gut metagenome; human gut
1248
1173
-
Lys
TTT
[ENA]
¢þ
>WENV182835831
OKFR01000607
[OKFR] human gut metagenome; human gut
1262
1171
-
Ser
GCT
[ENA]
¢þ
>WENV182835788
OKFR01000011
[OKFR] human gut metagenome; human gut
1353
1267
-
Leu
TAA
[ENA]
¢þ
>WENV182835830
OKFR01000536
[OKFR] human gut metagenome; human gut
1368
1440
+
Gln
TTG
[ENA]
¢þ
>WENV182835787
OKFR01000011
[OKFR] human gut metagenome; human gut
1433
1358
-
Gly
GCC
[ENA]
¢þ
>WENV182835826
OKFR01000167
[OKFR] human gut metagenome; human gut
1777
1692
-
Leu
CAG
[ENA]
¢þ
>WENV182835828
OKFR01000409
[OKFR] human gut metagenome; human gut
1833
1745
-
Ser
GGA
[ENA]
¢þ
>WENV182835814
OKFR01000040
[OKFR] human gut metagenome; human gut
1839
1764
-
Ala
TGC
[ENA]
¢þ
>WENV182835813
OKFR01000040
[OKFR] human gut metagenome; human gut
1936
1863
-
Pro
TGG
[ENA]
¢þ
>WENV182835812
OKFR01000040
[OKFR] human gut metagenome; human gut
2033
1957
-
Arg
ACG
[ENA]
¢þ
>WENV182835811
OKFR01000040
[OKFR] human gut metagenome; human gut
2127
2039
-
Leu
TAA
[ENA]
¢þ
>WENV182835810
OKFR01000040
[OKFR] human gut metagenome; human gut
2209
2135
-
Gly
GCC
[ENA]
¢þ
>WENV182835827
OKFR01000285
[OKFR] human gut metagenome; human gut
2307
2383
+
Ile
GAT
[ENA]
¢þ
>WENV182835809
OKFR01000040
[OKFR] human gut metagenome; human gut
2315
2243
-
Lys
TTT
[ENA]
¢þ
>WENV182835808
OKFR01000040
[OKFR] human gut metagenome; human gut
2396
2321
-
Thr
TGT
[ENA]
¢þ
>WENV182835807
OKFR01000040
[OKFR] human gut metagenome; human gut
2488
2413
-
Val
TAC
[ENA]
¢þ
>WENV182835820
OKFR01000062
[OKFR] human gut metagenome; human gut
3216
3131
-
Leu
GAG
[ENA]
¢þ
>WENV182835825
OKFR01000114
[OKFR] human gut metagenome; human gut
3714
3626
-
Ser
GGA
[ENA]
¢þ
>WENV182835824
OKFR01000112
[OKFR] human gut metagenome; human gut
4427
4513
+
Ser
TGA
[ENA]
¢þ
>WENV182835801
OKFR01000026
[OKFR] human gut metagenome; human gut
4807
4881
+
Asn
GTT
[ENA]
¢þ
>WENV182835802
OKFR01000026
[OKFR] human gut metagenome; human gut
4883
4973
+
Ser
GCT
[ENA]
¢þ
>WENV182835786
OKFR01000011
[OKFR] human gut metagenome; human gut
6389
6313
-
fMet
CAT
[ENA]
¢þ
>WENV182835823
OKFR01000105
[OKFR] human gut metagenome; human gut
7310
7404
+
SeC
TCA
[ENA]
¢þ
>WENV182835771
OKFR01000002
[OKFR] human gut metagenome; human gut
8627
8552
-
Gly
GCC
[ENA]
¢þ
>WENV182835770
OKFR01000002
[OKFR] human gut metagenome; human gut
8723
8648
-
Gly
GCC
[ENA]
¢þ
>WENV182835806
OKFR01000039
[OKFR] human gut metagenome; human gut
9188
9096
-
Ser
TGA
[ENA]
¢þ
>WENV182835796
OKFR01000014
[OKFR] human gut metagenome; human gut
10434
10362
-
Asp
GTC
[ENA]
¢þ
>WENV182835795
OKFR01000014
[OKFR] human gut metagenome; human gut
10516
10442
-
Glu
TTC
[ENA]
¢þ
>WENV182835819
OKFR01000062
[OKFR] human gut metagenome; human gut
10918
10843
-
Asn
GTT
[ENA]
¢þ
>WENV182835818
OKFR01000062
[OKFR] human gut metagenome; human gut
10996
10921
-
Phe
GAA
[ENA]
¢þ
>WENV182835822
OKFR01000091
[OKFR] human gut metagenome; human gut
11396
11321
-
Trp
CCA
[ENA]
¢þ
>WENV182835790
OKFR01000012
[OKFR] human gut metagenome; human gut
11731
11807
+
Asp
GTC
[ENA]
¢þ
>WENV182835791
OKFR01000012
[OKFR] human gut metagenome; human gut
11835
11911
+
Asp
GTC
[ENA]
¢þ
>WENV182835821
OKFR01000077
[OKFR] human gut metagenome; human gut
16345
16270
-
Lys
CTT
[ENA]
¢þ
>WENV182835817
OKFR01000060
[OKFR] human gut metagenome; human gut
18758
18830
+
Arg
CCG
[ENA]
¢þ
>WENV182835766
OKFR01000001
[OKFR] human gut metagenome; human gut
19476
19552
+
Ile2
CAT
[ENA]
¢þ
>WENV182835804
OKFR01000037
[OKFR] human gut metagenome; human gut
41226
41302
+
Arg
CCG
[ENA]
¢þ
>WENV182835805
OKFR01000037
[OKFR] human gut metagenome; human gut
41333
41408
+
His
GTG
[ENA]
¢þ
>WENV182835803
OKFR01000033
[OKFR] human gut metagenome; human gut
43713
43788
+
Arg
TCT
[ENA]
¢þ
>WENV182835797
OKFR01000025
[OKFR] human gut metagenome; human gut
49647
49722
+
Thr
TGT
[ENA]
¢þ
>WENV182835798
OKFR01000025
[OKFR] human gut metagenome; human gut
49753
49837
+
Tyr
GTA
[ENA]
¢þ
>WENV182835799
OKFR01000025
[OKFR] human gut metagenome; human gut
49879
49953
+
Gly
TCC
[ENA]
¢þ
>WENV182835800
OKFR01000025
[OKFR] human gut metagenome; human gut
49957
50032
+
Thr
GGT
[ENA]
¢þ
>WENV182835785
OKFR01000010
[OKFR] human gut metagenome; human gut
60091
60016
-
Asn
GTT
[ENA]
¢þ
>WENV182835792
OKFR01000013
[OKFR] human gut metagenome; human gut
65718
65811
+
Ser
GCT
[ENA]
¢þ
>WENV182835793
OKFR01000013
[OKFR] human gut metagenome; human gut
65836
65912
+
Arg
ACG
[ENA]
¢þ
>WENV182835794
OKFR01000013
[OKFR] human gut metagenome; human gut
65966
66042
+
Arg
ACG
[ENA]
¢þ
>WENV182835774
OKFR01000003
[OKFR] human gut metagenome; human gut
76411
76335
-
Val
GAC
[ENA]
¢þ
>WENV182835782
OKFR01000007
[OKFR] human gut metagenome; human gut
78834
78923
+
Ser
GGA
[ENA]
¢þ
>WENV182835784
OKFR01000007
[OKFR] human gut metagenome; human gut
80501
80425
-
Arg
TCT
[ENA]
¢þ
>WENV182835783
OKFR01000007
[OKFR] human gut metagenome; human gut
80630
80554
-
Pro
TGG
[ENA]
¢þ
>WENV182835767
OKFR01000002
[OKFR] human gut metagenome; human gut
81295
81371
+
Met
CAT
[ENA]
¢þ
>WENV182835768
OKFR01000002
[OKFR] human gut metagenome; human gut
81377
81461
+
Leu
TAG
[ENA]
¢þ
>WENV182835769
OKFR01000002
[OKFR] human gut metagenome; human gut
81489
81563
+
Gln
TTG
[ENA]
¢þ
>WENV182835777
OKFR01000004
[OKFR] human gut metagenome; human gut
86056
85981
-
Val
TAC
[ENA]
¢þ
>WENV182835775
OKFR01000004
[OKFR] human gut metagenome; human gut
87752
87827
+
Ala
GGC
[ENA]
¢þ
>WENV182835776
OKFR01000004
[OKFR] human gut metagenome; human gut
115927
116016
+
Ser
TGA
[ENA]
¢þ
>WENV182835772
OKFR01000003
[OKFR] human gut metagenome; human gut
142814
142890
+
fMet
CAT
[ENA]
¢þ
>WENV182835773
OKFR01000003
[OKFR] human gut metagenome; human gut
203476
203391
-
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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