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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKFW] human gut metagenome; human gut
HIT:
49 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182836249
OKFW01001612
[OKFW] human gut metagenome; human gut
25
99
+
Gln
CTG
[ENA]
¢þ
>WENV182836266
OKFW01004168
[OKFW] human gut metagenome; human gut
65
138
+
Gly
CCC
[ENA]
¢þ
>WENV182836243
OKFW01001032
[OKFW] human gut metagenome; human gut
101
176
+
Trp
CCA
[ENA]
¢þ
>WENV182836247
OKFW01001328
[OKFW] human gut metagenome; human gut
107
183
+
Arg
ACG
[ENA]
¢þ
>WENV182836259
OKFW01002943
[OKFW] human gut metagenome; human gut
159
234
+
Val
TAC
[ENA]
¢þ
>WENV182836263
OKFW01003160
[OKFW] human gut metagenome; human gut
174
100
-
Gln
TTG
[ENA]
¢þ
>WENV182836230
OKFW01000408
[OKFW] human gut metagenome; human gut
235
311
+
Ile
GAT
[ENA]
¢þ
>WENV182836260
OKFW01002943
[OKFW] human gut metagenome; human gut
251
327
+
Asp
GTC
[ENA]
¢þ
>WENV182836264
OKFW01003626
[OKFW] human gut metagenome; human gut
259
175
-
Leu
CAA
[ENA]
¢þ
>WENV182836254
OKFW01002377
[OKFW] human gut metagenome; human gut
259
334
+
Glu
TTC
[ENA]
¢þ
>WENV182836246
OKFW01001280
[OKFW] human gut metagenome; human gut
260
185
-
Phe
GAA
[ENA]
¢þ
>WENV182836270
OKFW01005449
[OKFW] human gut metagenome; human gut
285
360
+
Thr
TGT
[ENA]
¢þ
>WENV182836262
OKFW01003160
[OKFW] human gut metagenome; human gut
289
205
-
Leu
TAG
[ENA]
¢þ
>WENV182836233
OKFW01000533
[OKFW] human gut metagenome; human gut
316
402
+
Leu
GAG
[ENA]
¢þ
>WENV182836231
OKFW01000408
[OKFW] human gut metagenome; human gut
340
415
+
Ala
TGC
[ENA]
¢þ
>WENV182836255
OKFW01002426
[OKFW] human gut metagenome; human gut
369
293
-
Pro
GGG
[ENA]
¢þ
>WENV182836261
OKFW01003160
[OKFW] human gut metagenome; human gut
382
306
-
Met
CAT
[ENA]
¢þ
>WENV182836251
OKFW01001896
[OKFW] human gut metagenome; human gut
383
472
+
Ser
GGA
[ENA]
¢þ
>WENV182836268
OKFW01004470
[OKFW] human gut metagenome; human gut
400
476
+
Pro
GGG
[ENA]
¢þ
>WENV182836248
OKFW01001467
[OKFW] human gut metagenome; human gut
415
339
-
Pro
TGG
[ENA]
¢þ
>WENV182836234
OKFW01000533
[OKFW] human gut metagenome; human gut
463
539
+
fMet
CAT
[ENA]
¢þ
>WENV182836235
OKFW01000588
[OKFW] human gut metagenome; human gut
468
382
-
Leu
CAG
[ENA]
¢þ
>WENV182836265
OKFW01003826
[OKFW] human gut metagenome; human gut
510
434
-
Arg
CCT
[ENA]
¢þ
>WENV182836271
OKFW01005525
[OKFW] human gut metagenome; human gut
528
433
-
SeC
TCA
[ENA]
¢þ
>WENV182836267
OKFW01004360
[OKFW] human gut metagenome; human gut
540
615
+
Ala
GGC
[ENA]
¢þ
>WENV182836236
OKFW01000642
[OKFW] human gut metagenome; human gut
541
616
+
Asn
GTT
[ENA]
¢þ
>WENV182836269
OKFW01004840
[OKFW] human gut metagenome; human gut
569
645
+
Pro
GGG
[ENA]
¢þ
>WENV182836256
OKFW01002486
[OKFW] human gut metagenome; human gut
599
675
+
Arg
CCG
[ENA]
¢þ
>WENV182836237
OKFW01000642
[OKFW] human gut metagenome; human gut
619
694
+
Thr
TGT
[ENA]
¢þ
>WENV182836252
OKFW01002031
[OKFW] human gut metagenome; human gut
699
624
-
Asn
GTT
[ENA]
¢þ
>WENV182836257
OKFW01002486
[OKFW] human gut metagenome; human gut
735
810
+
His
GTG
[ENA]
¢þ
>WENV182836253
OKFW01002160
[OKFW] human gut metagenome; human gut
842
750
-
Ser
GCT
[ENA]
¢þ
>WENV182836258
OKFW01002486
[OKFW] human gut metagenome; human gut
852
938
+
Leu
CAG
[ENA]
¢þ
>WENV182836244
OKFW01001099
[OKFW] human gut metagenome; human gut
870
796
-
Arg
CCT
[ENA]
¢þ
>WENV182836240
OKFW01000870
[OKFW] human gut metagenome; human gut
910
985
+
Asn
GTT
[ENA]
¢þ
>WENV182836250
OKFW01001849
[OKFW] human gut metagenome; human gut
958
1033
+
Thr
CGT
[ENA]
¢þ
>WENV182836232
OKFW01000438
[OKFW] human gut metagenome; human gut
1028
1104
+
Arg
TCT
[ENA]
¢þ
>WENV182836245
OKFW01001152
[OKFW] human gut metagenome; human gut
1083
997
-
Ser
TGA
[ENA]
¢þ
>WENV182836225
OKFW01000117
[OKFW] human gut metagenome; human gut
1306
1382
+
Asp
GTC
[ENA]
¢þ
>WENV182836241
OKFW01000899
[OKFW] human gut metagenome; human gut
1323
1234
-
Ser
CGA
[ENA]
¢þ
>WENV182836223
OKFW01000001
[OKFW] human gut metagenome; human gut
1431
1355
-
Arg
TCT
[ENA]
¢þ
>WENV182836239
OKFW01000655
[OKFW] human gut metagenome; human gut
1595
1501
-
SeC
TCA
[ENA]
¢þ
>WENV182836242
OKFW01000935
[OKFW] human gut metagenome; human gut
1698
1773
+
Gly
GCC
[ENA]
¢þ
>WENV182836238
OKFW01000643
[OKFW] human gut metagenome; human gut
1963
2050
+
Ser
TGA
[ENA]
¢þ
>WENV182836227
OKFW01000193
[OKFW] human gut metagenome; human gut
3179
3254
+
Gly
GCC
[ENA]
¢þ
>WENV182836229
OKFW01000329
[OKFW] human gut metagenome; human gut
3255
3330
+
Ile2
CAT
[ENA]
¢þ
>WENV182836226
OKFW01000156
[OKFW] human gut metagenome; human gut
3827
3911
+
Tyr
GTA
[ENA]
¢þ
>WENV182836228
OKFW01000193
[OKFW] human gut metagenome; human gut
3929
4002
+
Cys
GCA
[ENA]
¢þ
>WENV182836224
OKFW01000049
[OKFW] human gut metagenome; human gut
4006
4081
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK