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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKGB] human gut metagenome; human gut
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182837040
OKGB01003038
[OKGB] human gut metagenome; human gut
19
95
+
Ile2
CAT
[ENA]
¢þ
>WENV182837036
OKGB01002295
[OKGB] human gut metagenome; human gut
104
178
+
Gln
CTG
[ENA]
¢þ
>WENV182837034
OKGB01001522
[OKGB] human gut metagenome; human gut
143
219
+
fMet
CAT
[ENA]
¢þ
>WENV182837037
OKGB01002623
[OKGB] human gut metagenome; human gut
181
108
-
Gly
CCC
[ENA]
¢þ
>WENV182837039
OKGB01002963
[OKGB] human gut metagenome; human gut
192
117
-
Ile2
CAT
[ENA]
¢þ
>WENV182837035
OKGB01001582
[OKGB] human gut metagenome; human gut
194
119
-
Thr
CGT
[ENA]
¢þ
>WENV182837038
OKGB01002787
[OKGB] human gut metagenome; human gut
456
362
-
SeC
TCA
[ENA]
¢þ
>WENV182837033
OKGB01001106
[OKGB] human gut metagenome; human gut
474
550
+
Arg
TCT
[ENA]
¢þ
>WENV182837032
OKGB01001031
[OKGB] human gut metagenome; human gut
477
390
-
Ser
GGA
[ENA]
¢þ
>WENV182837027
OKGB01000581
[OKGB] human gut metagenome; human gut
746
821
+
Asn
GTT
[ENA]
¢þ
>WENV182837019
OKGB01000153
[OKGB] human gut metagenome; human gut
847
772
-
Lys
TTT
[ENA]
¢þ
>WENV182837017
OKGB01000036
[OKGB] human gut metagenome; human gut
899
815
-
Leu
CAA
[ENA]
¢þ
>WENV182837018
OKGB01000135
[OKGB] human gut metagenome; human gut
1046
960
-
Leu
GAG
[ENA]
¢þ
>WENV182837025
OKGB01000367
[OKGB] human gut metagenome; human gut
1051
975
-
Arg
ACG
[ENA]
¢þ
>WENV182837028
OKGB01000689
[OKGB] human gut metagenome; human gut
1111
1186
+
Gly
GCC
[ENA]
¢þ
>WENV182837024
OKGB01000367
[OKGB] human gut metagenome; human gut
1147
1055
-
Ser
GCT
[ENA]
¢þ
>WENV182837029
OKGB01000689
[OKGB] human gut metagenome; human gut
1240
1313
+
Cys
GCA
[ENA]
¢þ
>WENV182837030
OKGB01000689
[OKGB] human gut metagenome; human gut
1326
1412
+
Leu
TAA
[ENA]
¢þ
>WENV182837031
OKGB01000760
[OKGB] human gut metagenome; human gut
1439
1514
+
Ser
TGA
[ENA]
¢þ
>WENV182837021
OKGB01000348
[OKGB] human gut metagenome; human gut
1525
1601
+
Arg
CCG
[ENA]
¢þ
>WENV182837022
OKGB01000348
[OKGB] human gut metagenome; human gut
1660
1735
+
His
GTG
[ENA]
¢þ
>WENV182837026
OKGB01000512
[OKGB] human gut metagenome; human gut
1726
1801
+
Val
TAC
[ENA]
¢þ
>WENV182837023
OKGB01000348
[OKGB] human gut metagenome; human gut
1756
1842
+
Leu
CAG
[ENA]
¢þ
>WENV182837020
OKGB01000209
[OKGB] human gut metagenome; human gut
2295
2371
+
Asp
GTC
[ENA]
¢þ
>WENV182837016
OKGB01000005
[OKGB] human gut metagenome; human gut
4095
4170
+
Glu
TTC
[ENA]
¢þ
>WENV182836996
OKGB01000001
[OKGB] human gut metagenome; human gut
40116
40192
+
Pro
TGG
[ENA]
¢þ
>WENV182836997
OKGB01000001
[OKGB] human gut metagenome; human gut
40200
40277
+
Glu
TTC
[ENA]
¢þ
>WENV182836998
OKGB01000001
[OKGB] human gut metagenome; human gut
40529
40605
+
Asn
GTT
[ENA]
¢þ
>WENV182836999
OKGB01000001
[OKGB] human gut metagenome; human gut
40707
40783
+
Asp
GTC
[ENA]
¢þ
>WENV182837000
OKGB01000001
[OKGB] human gut metagenome; human gut
41365
41441
+
Met
CAT
[ENA]
¢þ
>WENV182837001
OKGB01000001
[OKGB] human gut metagenome; human gut
41443
41518
+
Ile
GAT
[ENA]
¢þ
>WENV182837002
OKGB01000001
[OKGB] human gut metagenome; human gut
41794
41870
+
Arg
TCT
[ENA]
¢þ
>WENV182837003
OKGB01000001
[OKGB] human gut metagenome; human gut
42110
42199
+
Ser
TGA
[ENA]
¢þ
>WENV182837004
OKGB01000001
[OKGB] human gut metagenome; human gut
42623
42698
+
Ala
TGC
[ENA]
¢þ
>WENV182837005
OKGB01000001
[OKGB] human gut metagenome; human gut
42705
42779
+
Gly
TCC
[ENA]
¢þ
>WENV182837006
OKGB01000001
[OKGB] human gut metagenome; human gut
42787
42862
+
Thr
TGT
[ENA]
¢þ
>WENV182837007
OKGB01000001
[OKGB] human gut metagenome; human gut
42959
43033
+
Val
TAC
[ENA]
¢þ
>WENV182837008
OKGB01000001
[OKGB] human gut metagenome; human gut
43035
43112
+
Leu
CAA
[ENA]
¢þ
>WENV182837009
OKGB01000001
[OKGB] human gut metagenome; human gut
43119
43194
+
Arg
ACG
[ENA]
¢þ
>WENV182837010
OKGB01000001
[OKGB] human gut metagenome; human gut
44017
44092
+
Gln
TTG
[ENA]
¢þ
>WENV182837011
OKGB01000001
[OKGB] human gut metagenome; human gut
44095
44173
+
Leu
TAA
[ENA]
¢þ
>WENV182837012
OKGB01000001
[OKGB] human gut metagenome; human gut
44179
44254
+
Gln
CTG
[ENA]
¢þ
>WENV182837013
OKGB01000001
[OKGB] human gut metagenome; human gut
44286
44361
+
His
GTG
[ENA]
¢þ
>WENV182837014
OKGB01000001
[OKGB] human gut metagenome; human gut
45197
45289
+
Ser
GCT
[ENA]
¢þ
>WENV182837015
OKGB01000001
[OKGB] human gut metagenome; human gut
45294
45369
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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