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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKGD] human gut metagenome; human gut
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182837138
OKGD01001388
[OKGD] human gut metagenome; human gut
66
150
+
Leu
TAG
[ENA]
¢þ
>WENV182837150
OKGD01004643
[OKGD] human gut metagenome; human gut
76
4
-
Thr
GGT
[ENA]
¢þ
>WENV182837152
OKGD01004976
[OKGD] human gut metagenome; human gut
108
184
+
Asp
GTC
[ENA]
¢þ
>WENV182837145
OKGD01002525
[OKGD] human gut metagenome; human gut
109
196
+
Ser
TGA
[ENA]
¢þ
>WENV182837148
OKGD01003789
[OKGD] human gut metagenome; human gut
123
50
-
Gly
CCC
[ENA]
¢þ
>WENV182837144
OKGD01002337
[OKGD] human gut metagenome; human gut
128
204
+
fMet
CAT
[ENA]
¢þ
>WENV182837147
OKGD01002865
[OKGD] human gut metagenome; human gut
173
244
+
Gln
TTG
[ENA]
¢þ
>WENV182837139
OKGD01001388
[OKGD] human gut metagenome; human gut
174
248
+
Gln
TTG
[ENA]
¢þ
>WENV182837149
OKGD01004643
[OKGD] human gut metagenome; human gut
250
167
-
Tyr
GTA
[ENA]
¢þ
>WENV182837140
OKGD01001388
[OKGD] human gut metagenome; human gut
264
340
+
Met
CAT
[ENA]
¢þ
>WENV182837142
OKGD01002088
[OKGD] human gut metagenome; human gut
281
356
+
Phe
GAA
[ENA]
¢þ
>WENV182837130
OKGD01000142
[OKGD] human gut metagenome; human gut
298
373
+
Gly
GCC
[ENA]
¢þ
>WENV182837141
OKGD01001388
[OKGD] human gut metagenome; human gut
389
463
+
Gln
CTG
[ENA]
¢þ
>WENV182837151
OKGD01004820
[OKGD] human gut metagenome; human gut
431
503
+
Glu
TTC
[ENA]
¢þ
>WENV182837137
OKGD01001317
[OKGD] human gut metagenome; human gut
452
538
+
Leu
CAG
[ENA]
¢þ
>WENV182837143
OKGD01002211
[OKGD] human gut metagenome; human gut
493
418
-
Trp
CCA
[ENA]
¢þ
>WENV182837135
OKGD01001124
[OKGD] human gut metagenome; human gut
506
419
-
Ser
GGA
[ENA]
¢þ
>WENV182837133
OKGD01000694
[OKGD] human gut metagenome; human gut
526
442
-
Leu
CAA
[ENA]
¢þ
>WENV182837146
OKGD01002685
[OKGD] human gut metagenome; human gut
558
634
+
Arg
TCT
[ENA]
¢þ
>WENV182837132
OKGD01000255
[OKGD] human gut metagenome; human gut
695
770
+
Lys
TTT
[ENA]
¢þ
>WENV182837136
OKGD01001166
[OKGD] human gut metagenome; human gut
716
641
-
Asn
GTT
[ENA]
¢þ
>WENV182837127
OKGD01000042
[OKGD] human gut metagenome; human gut
718
802
+
Tyr
GTA
[ENA]
¢þ
>WENV182837128
OKGD01000042
[OKGD] human gut metagenome; human gut
919
993
+
Gly
TCC
[ENA]
¢þ
>WENV182837134
OKGD01000955
[OKGD] human gut metagenome; human gut
950
1026
+
Arg
CCG
[ENA]
¢þ
>WENV182837129
OKGD01000042
[OKGD] human gut metagenome; human gut
1000
1075
+
Thr
GGT
[ENA]
¢þ
>WENV182837131
OKGD01000154
[OKGD] human gut metagenome; human gut
1327
1403
+
Pro
GGG
[ENA]
¢þ
>WENV182837126
OKGD01000019
[OKGD] human gut metagenome; human gut
1357
1283
-
Ala
TGC
[ENA]
¢þ
>WENV182837125
OKGD01000019
[OKGD] human gut metagenome; human gut
1462
1386
-
Ile
GAT
[ENA]
¢þ
>WENV182837122
OKGD01000005
[OKGD] human gut metagenome; human gut
1937
2013
+
Ile
GAT
[ENA]
¢þ
>WENV182837123
OKGD01000005
[OKGD] human gut metagenome; human gut
2056
2131
+
Ala
TGC
[ENA]
¢þ
>WENV182837124
OKGD01000005
[OKGD] human gut metagenome; human gut
5483
5559
+
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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