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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKGG] human gut metagenome; human gut
HIT:
30 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182837381
OKGG01000469
[OKGG] human gut metagenome; human gut
73
159
+
Leu
TAA
[ENA]
¢þ
>WENV182837390
OKGG01001233
[OKGG] human gut metagenome; human gut
87
11
-
Arg
TCT
[ENA]
¢þ
>WENV182837388
OKGG01001139
[OKGG] human gut metagenome; human gut
102
29
-
Gly
CCC
[ENA]
¢þ
>WENV182837370
OKGG01000004
[OKGG] human gut metagenome; human gut
102
176
+
Gly
TCC
[ENA]
¢þ
>WENV182837376
OKGG01000249
[OKGG] human gut metagenome; human gut
103
178
+
Trp
CCA
[ENA]
¢þ
>WENV182837375
OKGG01000145
[OKGG] human gut metagenome; human gut
106
182
+
Asp
GTC
[ENA]
¢þ
>WENV182837393
OKGG01001241
[OKGG] human gut metagenome; human gut
153
79
-
Gln
TTG
[ENA]
¢þ
>WENV182837392
OKGG01001241
[OKGG] human gut metagenome; human gut
261
177
-
Leu
TAG
[ENA]
¢þ
>WENV182837391
OKGG01001241
[OKGG] human gut metagenome; human gut
346
270
-
Met
CAT
[ENA]
¢þ
>WENV182837397
OKGG01001436
[OKGG] human gut metagenome; human gut
389
313
-
Val
GAC
[ENA]
¢þ
>WENV182837374
OKGG01000109
[OKGG] human gut metagenome; human gut
403
327
-
fMet
CAT
[ENA]
¢þ
>WENV182837368
OKGG01000003
[OKGG] human gut metagenome; human gut
554
628
+
Asn
GTT
[ENA]
¢þ
>WENV182837371
OKGG01000081
[OKGG] human gut metagenome; human gut
572
658
+
Leu
CAG
[ENA]
¢þ
>WENV182837369
OKGG01000003
[OKGG] human gut metagenome; human gut
634
710
+
Arg
TCT
[ENA]
¢þ
>WENV182837377
OKGG01000286
[OKGG] human gut metagenome; human gut
687
611
-
Pro
GGG
[ENA]
¢þ
>WENV182837372
OKGG01000081
[OKGG] human gut metagenome; human gut
701
777
+
Pro
TGG
[ENA]
¢þ
>WENV182837386
OKGG01000929
[OKGG] human gut metagenome; human gut
774
849
+
Asn
GTT
[ENA]
¢þ
>WENV182837396
OKGG01001408
[OKGG] human gut metagenome; human gut
860
952
+
Ser
GCT
[ENA]
¢þ
>WENV182837395
OKGG01001393
[OKGG] human gut metagenome; human gut
954
1029
+
Asn
GTT
[ENA]
¢þ
>WENV182837385
OKGG01000774
[OKGG] human gut metagenome; human gut
989
895
-
SeC
TCA
[ENA]
¢þ
>WENV182837394
OKGG01001340
[OKGG] human gut metagenome; human gut
993
1068
+
Thr
TGT
[ENA]
¢þ
>WENV182837387
OKGG01001102
[OKGG] human gut metagenome; human gut
998
911
-
Ser
TGA
[ENA]
¢þ
>WENV182837383
OKGG01000565
[OKGG] human gut metagenome; human gut
1035
1124
+
Ser
CGA
[ENA]
¢þ
>WENV182837382
OKGG01000550
[OKGG] human gut metagenome; human gut
1087
1162
+
Ala
GGC
[ENA]
¢þ
>WENV182837389
OKGG01001151
[OKGG] human gut metagenome; human gut
1172
1098
-
Arg
CCT
[ENA]
¢þ
>WENV182837384
OKGG01000754
[OKGG] human gut metagenome; human gut
1580
1655
+
Thr
CGT
[ENA]
¢þ
>WENV182837380
OKGG01000462
[OKGG] human gut metagenome; human gut
2753
2677
-
Pro
CGG
[ENA]
¢þ
>WENV182837379
OKGG01000358
[OKGG] human gut metagenome; human gut
2831
2915
+
Leu
CAA
[ENA]
¢þ
>WENV182837378
OKGG01000328
[OKGG] human gut metagenome; human gut
4071
3985
-
Leu
GAG
[ENA]
¢þ
>WENV182837373
OKGG01000096
[OKGG] human gut metagenome; human gut
6425
6349
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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