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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKGL] human gut metagenome; human gut
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182837707
OKGL01003384
[OKGL] human gut metagenome; human gut
135
211
+
Arg
TCT
[ENA]
¢þ
>WENV182837708
OKGL01003475
[OKGL] human gut metagenome; human gut
263
350
+
Ser
TGA
[ENA]
¢þ
>WENV182837691
OKGL01000504
[OKGL] human gut metagenome; human gut
864
939
+
Val
TAC
[ENA]
¢þ
>WENV182837692
OKGL01000504
[OKGL] human gut metagenome; human gut
944
1019
+
Lys
TTT
[ENA]
¢þ
>WENV182837702
OKGL01001067
[OKGL] human gut metagenome; human gut
996
1071
+
Thr
CGT
[ENA]
¢þ
>WENV182837687
OKGL01000289
[OKGL] human gut metagenome; human gut
1209
1115
-
SeC
TCA
[ENA]
¢þ
>WENV182837706
OKGL01001510
[OKGL] human gut metagenome; human gut
1223
1299
+
Pro
GGG
[ENA]
¢þ
>WENV182837700
OKGL01000805
[OKGL] human gut metagenome; human gut
1257
1332
+
Ala
GGC
[ENA]
¢þ
>WENV182837701
OKGL01000805
[OKGL] human gut metagenome; human gut
1374
1449
+
Ala
GGC
[ENA]
¢þ
>WENV182837667
OKGL01000009
[OKGL] human gut metagenome; human gut
1535
1610
+
Glu
TTC
[ENA]
¢þ
>WENV182837699
OKGL01000793
[OKGL] human gut metagenome; human gut
1612
1537
-
Thr
CGT
[ENA]
¢þ
>WENV182837704
OKGL01001221
[OKGL] human gut metagenome; human gut
1678
1754
+
Met
CAT
[ENA]
¢þ
>WENV182837705
OKGL01001221
[OKGL] human gut metagenome; human gut
1796
1870
+
Gln
CTG
[ENA]
¢þ
>WENV182837694
OKGL01000664
[OKGL] human gut metagenome; human gut
1823
1747
-
Asp
GTC
[ENA]
¢þ
>WENV182837703
OKGL01001218
[OKGL] human gut metagenome; human gut
1870
1795
-
Trp
CCA
[ENA]
¢þ
>WENV182837693
OKGL01000653
[OKGL] human gut metagenome; human gut
1897
1984
+
Ser
GGA
[ENA]
¢þ
>WENV182837698
OKGL01000684
[OKGL] human gut metagenome; human gut
1970
1895
-
Phe
GAA
[ENA]
¢þ
>WENV182837674
OKGL01000081
[OKGL] human gut metagenome; human gut
2018
1932
-
Leu
TAA
[ENA]
¢þ
>WENV182837695
OKGL01000665
[OKGL] human gut metagenome; human gut
2041
2125
+
Leu
CAA
[ENA]
¢þ
>WENV182837673
OKGL01000081
[OKGL] human gut metagenome; human gut
2103
2030
-
Cys
GCA
[ENA]
¢þ
>WENV182837672
OKGL01000081
[OKGL] human gut metagenome; human gut
2230
2155
-
Gly
GCC
[ENA]
¢þ
>WENV182837685
OKGL01000214
[OKGL] human gut metagenome; human gut
2342
2266
-
fMet
CAT
[ENA]
¢þ
>WENV182837696
OKGL01000675
[OKGL] human gut metagenome; human gut
2818
2894
+
Arg
CCG
[ENA]
¢þ
>WENV182837697
OKGL01000675
[OKGL] human gut metagenome; human gut
2953
3028
+
His
GTG
[ENA]
¢þ
>WENV182837679
OKGL01000181
[OKGL] human gut metagenome; human gut
3021
2948
-
Gly
CCC
[ENA]
¢þ
>WENV182837678
OKGL01000166
[OKGL] human gut metagenome; human gut
3691
3616
-
Ile2
CAT
[ENA]
¢þ
>WENV182837690
OKGL01000423
[OKGL] human gut metagenome; human gut
3943
3867
-
Val
GAC
[ENA]
¢þ
>WENV182837676
OKGL01000137
[OKGL] human gut metagenome; human gut
3951
4026
+
Gly
GCC
[ENA]
¢þ
>WENV182837688
OKGL01000349
[OKGL] human gut metagenome; human gut
3998
4082
+
Tyr
GTA
[ENA]
¢þ
>WENV182837689
OKGL01000423
[OKGL] human gut metagenome; human gut
4024
3948
-
Val
GAC
[ENA]
¢þ
>WENV182837684
OKGL01000194
[OKGL] human gut metagenome; human gut
4203
4128
-
Arg
TCT
[ENA]
¢þ
>WENV182837686
OKGL01000240
[OKGL] human gut metagenome; human gut
4742
4655
-
Ser
TGA
[ENA]
¢þ
>WENV182837671
OKGL01000078
[OKGL] human gut metagenome; human gut
5405
5329
-
Arg
ACG
[ENA]
¢þ
>WENV182837680
OKGL01000191
[OKGL] human gut metagenome; human gut
5495
5570
+
Thr
TGT
[ENA]
¢þ
>WENV182837670
OKGL01000078
[OKGL] human gut metagenome; human gut
5501
5409
-
Ser
GCT
[ENA]
¢þ
>WENV182837681
OKGL01000191
[OKGL] human gut metagenome; human gut
5579
5663
+
Tyr
GTA
[ENA]
¢þ
>WENV182837682
OKGL01000191
[OKGL] human gut metagenome; human gut
5780
5854
+
Gly
TCC
[ENA]
¢þ
>WENV182837683
OKGL01000191
[OKGL] human gut metagenome; human gut
5861
5936
+
Thr
GGT
[ENA]
¢þ
>WENV182837677
OKGL01000153
[OKGL] human gut metagenome; human gut
7335
7411
+
Pro
TGG
[ENA]
¢þ
>WENV182837675
OKGL01000084
[OKGL] human gut metagenome; human gut
7948
7876
-
Arg
CCT
[ENA]
¢þ
>WENV182837669
OKGL01000066
[OKGL] human gut metagenome; human gut
8508
8432
-
Arg
TCT
[ENA]
¢þ
>WENV182837668
OKGL01000022
[OKGL] human gut metagenome; human gut
14386
14472
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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