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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKGV] human gut metagenome; human gut
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182838733
OKGV01003605
[OKGV] human gut metagenome; human gut
77
153
+
Ile
GAT
[ENA]
¢þ
>WENV182838722
OKGV01001202
[OKGV] human gut metagenome; human gut
80
156
+
Val
GAC
[ENA]
¢þ
>WENV182838732
OKGV01003581
[OKGV] human gut metagenome; human gut
138
64
-
Gly
GCC
[ENA]
¢þ
>WENV182838725
OKGV01002217
[OKGV] human gut metagenome; human gut
159
75
-
Tyr
GTA
[ENA]
¢þ
>WENV182838728
OKGV01003538
[OKGV] human gut metagenome; human gut
168
92
-
Arg
TCT
[ENA]
¢þ
>WENV182838731
OKGV01003581
[OKGV] human gut metagenome; human gut
217
142
-
Val
TAC
[ENA]
¢þ
>WENV182838714
OKGV01000829
[OKGV] human gut metagenome; human gut
231
145
-
Leu
GAG
[ENA]
¢þ
>WENV182838734
OKGV01003605
[OKGV] human gut metagenome; human gut
259
334
+
Ala
TGC
[ENA]
¢þ
>WENV182838730
OKGV01003581
[OKGV] human gut metagenome; human gut
297
223
-
Glu
TTC
[ENA]
¢þ
>WENV182838735
OKGV01003624
[OKGV] human gut metagenome; human gut
346
432
+
Leu
GAG
[ENA]
¢þ
>WENV182838729
OKGV01003581
[OKGV] human gut metagenome; human gut
461
386
-
Gln
TTG
[ENA]
¢þ
>WENV182838727
OKGV01003352
[OKGV] human gut metagenome; human gut
469
397
-
Arg
CCT
[ENA]
¢þ
>WENV182838726
OKGV01002919
[OKGV] human gut metagenome; human gut
477
553
+
Met
CAT
[ENA]
¢þ
>WENV182838717
OKGV01001002
[OKGV] human gut metagenome; human gut
555
461
-
SeC
TCA
[ENA]
¢þ
>WENV182838718
OKGV01001115
[OKGV] human gut metagenome; human gut
609
533
-
Arg
TCT
[ENA]
¢þ
>WENV182838707
OKGV01000254
[OKGV] human gut metagenome; human gut
650
726
+
fMet
CAT
[ENA]
¢þ
>WENV182838715
OKGV01000961
[OKGV] human gut metagenome; human gut
659
734
+
Ile2
CAT
[ENA]
¢þ
>WENV182838704
OKGV01000209
[OKGV] human gut metagenome; human gut
671
758
+
Ser
GGA
[ENA]
¢þ
>WENV182838724
OKGV01001903
[OKGV] human gut metagenome; human gut
714
639
-
Asn
GTT
[ENA]
¢þ
>WENV182838723
OKGV01001208
[OKGV] human gut metagenome; human gut
726
651
-
Phe
GAA
[ENA]
¢þ
>WENV182838716
OKGV01000971
[OKGV] human gut metagenome; human gut
1102
1178
+
Pro
GGG
[ENA]
¢þ
>WENV182838703
OKGV01000182
[OKGV] human gut metagenome; human gut
1141
1055
-
Leu
TAA
[ENA]
¢þ
>WENV182838719
OKGV01001176
[OKGV] human gut metagenome; human gut
1188
1260
+
Val
TAC
[ENA]
¢þ
>WENV182838702
OKGV01000182
[OKGV] human gut metagenome; human gut
1226
1153
-
Cys
GCA
[ENA]
¢þ
>WENV182838720
OKGV01001176
[OKGV] human gut metagenome; human gut
1265
1337
+
Gly
TCC
[ENA]
¢þ
>WENV182838709
OKGV01000454
[OKGV] human gut metagenome; human gut
1294
1219
-
Ala
GGC
[ENA]
¢þ
>WENV182838721
OKGV01001176
[OKGV] human gut metagenome; human gut
1346
1422
+
Ile
GAT
[ENA]
¢þ
>WENV182838701
OKGV01000182
[OKGV] human gut metagenome; human gut
1353
1278
-
Gly
GCC
[ENA]
¢þ
>WENV182838708
OKGV01000454
[OKGV] human gut metagenome; human gut
1411
1336
-
Ala
GGC
[ENA]
¢þ
>WENV182838710
OKGV01000461
[OKGV] human gut metagenome; human gut
1499
1426
-
Gly
CCC
[ENA]
¢þ
>WENV182838696
OKGV01000059
[OKGV] human gut metagenome; human gut
1584
1670
+
Leu
CAG
[ENA]
¢þ
>WENV182838697
OKGV01000114
[OKGV] human gut metagenome; human gut
1812
1728
-
Leu
CAA
[ENA]
¢þ
>WENV182838700
OKGV01000171
[OKGV] human gut metagenome; human gut
1994
2069
+
Arg
TCT
[ENA]
¢þ
>WENV182838711
OKGV01000484
[OKGV] human gut metagenome; human gut
2167
2243
+
Arg
CCG
[ENA]
¢þ
>WENV182838712
OKGV01000484
[OKGV] human gut metagenome; human gut
2311
2386
+
His
GTG
[ENA]
¢þ
>WENV182838713
OKGV01000484
[OKGV] human gut metagenome; human gut
2408
2494
+
Leu
CAG
[ENA]
¢þ
>WENV182838706
OKGV01000252
[OKGV] human gut metagenome; human gut
3209
3134
-
Trp
CCA
[ENA]
¢þ
>WENV182838705
OKGV01000252
[OKGV] human gut metagenome; human gut
3338
3262
-
Asp
GTC
[ENA]
¢þ
>WENV182838698
OKGV01000118
[OKGV] human gut metagenome; human gut
4065
4157
+
Ser
GCT
[ENA]
¢þ
>WENV182838699
OKGV01000118
[OKGV] human gut metagenome; human gut
4162
4238
+
Arg
ACG
[ENA]
¢þ
>WENV182838695
OKGV01000013
[OKGV] human gut metagenome; human gut
6069
6145
+
Pro
TGG
[ENA]
¢þ
>WENV182838694
OKGV01000007
[OKGV] human gut metagenome; human gut
6517
6442
-
Thr
GGT
[ENA]
¢þ
>WENV182838693
OKGV01000007
[OKGV] human gut metagenome; human gut
6598
6524
-
Gly
TCC
[ENA]
¢þ
>WENV182838692
OKGV01000007
[OKGV] human gut metagenome; human gut
6799
6715
-
Tyr
GTA
[ENA]
¢þ
>WENV182838691
OKGV01000007
[OKGV] human gut metagenome; human gut
6883
6808
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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