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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKGX] human gut metagenome; human gut
HIT:
73 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182838779
OKGX01000033
[OKGX] human gut metagenome; human gut
2
76
+
Gln
CTG
[ENA]
¢þ
>WENV182838826
OKGX01001341
[OKGX] human gut metagenome; human gut
7
80
+
fMet
CAT
[ENA]
¢þ
>WENV182838825
OKGX01001318
[OKGX] human gut metagenome; human gut
40
115
+
Asn
GTT
[ENA]
¢þ
>WENV182838838
OKGX01001664
[OKGX] human gut metagenome; human gut
62
135
+
Lys
TTT
[ENA]
¢þ
>WENV182838842
OKGX01003075
[OKGX] human gut metagenome; human gut
87
163
+
Ile
GAT
[ENA]
¢þ
>WENV182838844
OKGX01003215
[OKGX] human gut metagenome; human gut
105
176
+
Gly
GCC
[ENA]
¢þ
>WENV182838835
OKGX01001354
[OKGX] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182838836
OKGX01001468
[OKGX] human gut metagenome; human gut
108
198
+
Ser
GGA
[ENA]
¢þ
>WENV182838840
OKGX01002176
[OKGX] human gut metagenome; human gut
111
37
-
Val
TAC
[ENA]
¢þ
>WENV182838807
OKGX01000167
[OKGX] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182838796
OKGX01000086
[OKGX] human gut metagenome; human gut
177
102
-
Val
TAC
[ENA]
¢þ
>WENV182838827
OKGX01001341
[OKGX] human gut metagenome; human gut
184
258
+
Phe
GAA
[ENA]
¢þ
>WENV182838845
OKGX01003215
[OKGX] human gut metagenome; human gut
192
277
+
Leu
TAA
[ENA]
¢þ
>WENV182838843
OKGX01003075
[OKGX] human gut metagenome; human gut
200
275
+
Ala
TGC
[ENA]
¢þ
>WENV182838828
OKGX01001341
[OKGX] human gut metagenome; human gut
266
341
+
Thr
TGT
[ENA]
¢þ
>WENV182838823
OKGX01000805
[OKGX] human gut metagenome; human gut
275
349
+
Leu
TAA
[ENA]
¢þ
>WENV182838846
OKGX01003215
[OKGX] human gut metagenome; human gut
292
365
+
Arg
ACG
[ENA]
¢þ
>WENV182838788
OKGX01000058
[OKGX] human gut metagenome; human gut
296
212
-
Tyr
GTA
[ENA]
¢þ
>WENV182838829
OKGX01001341
[OKGX] human gut metagenome; human gut
346
429
+
Tyr
GTA
[ENA]
¢þ
>WENV182838830
OKGX01001341
[OKGX] human gut metagenome; human gut
438
511
+
Trp
CCA
[ENA]
¢þ
>WENV182838841
OKGX01002925
[OKGX] human gut metagenome; human gut
450
525
+
Val
TAC
[ENA]
¢þ
>WENV182838831
OKGX01001341
[OKGX] human gut metagenome; human gut
514
587
+
His
GTG
[ENA]
¢þ
>WENV182838824
OKGX01001178
[OKGX] human gut metagenome; human gut
532
461
-
Arg
CCG
[ENA]
¢þ
>WENV182838832
OKGX01001341
[OKGX] human gut metagenome; human gut
598
669
+
Gln
TTG
[ENA]
¢þ
>WENV182838839
OKGX01002155
[OKGX] human gut metagenome; human gut
606
681
+
Arg
TCT
[ENA]
¢þ
>WENV182838837
OKGX01001530
[OKGX] human gut metagenome; human gut
616
530
-
Leu
GAG
[ENA]
¢þ
>WENV182838833
OKGX01001341
[OKGX] human gut metagenome; human gut
675
748
+
Cys
GCA
[ENA]
¢þ
>WENV182838822
OKGX01000583
[OKGX] human gut metagenome; human gut
687
761
+
Arg
TCT
[ENA]
¢þ
>WENV182838834
OKGX01001341
[OKGX] human gut metagenome; human gut
962
1045
+
Leu
CAA
[ENA]
¢þ
>WENV182838797
OKGX01000092
[OKGX] human gut metagenome; human gut
1011
925
-
Leu
CAG
[ENA]
¢þ
>WENV182838808
OKGX01000171
[OKGX] human gut metagenome; human gut
1656
1572
-
Leu
CAA
[ENA]
¢þ
>WENV182838819
OKGX01000582
[OKGX] human gut metagenome; human gut
2307
2382
+
Thr
TGT
[ENA]
¢þ
>WENV182838820
OKGX01000582
[OKGX] human gut metagenome; human gut
2393
2477
+
Tyr
GTA
[ENA]
¢þ
>WENV182838815
OKGX01000179
[OKGX] human gut metagenome; human gut
2490
2566
+
Arg
TCT
[ENA]
¢þ
>WENV182838821
OKGX01000582
[OKGX] human gut metagenome; human gut
2593
2667
+
Gly
TCC
[ENA]
¢þ
>WENV182838794
OKGX01000086
[OKGX] human gut metagenome; human gut
2879
2954
+
Ala
GGC
[ENA]
¢þ
>WENV182838800
OKGX01000098
[OKGX] human gut metagenome; human gut
2910
2824
-
Leu
TAA
[ENA]
¢þ
>WENV182838795
OKGX01000086
[OKGX] human gut metagenome; human gut
2996
3071
+
Ala
GGC
[ENA]
¢þ
>WENV182838799
OKGX01000098
[OKGX] human gut metagenome; human gut
2997
2924
-
Cys
GCA
[ENA]
¢þ
>WENV182838818
OKGX01000495
[OKGX] human gut metagenome; human gut
3008
3095
+
Ser
GGA
[ENA]
¢þ
>WENV182838798
OKGX01000098
[OKGX] human gut metagenome; human gut
3113
3038
-
Gly
GCC
[ENA]
¢þ
>WENV182838802
OKGX01000105
[OKGX] human gut metagenome; human gut
4674
4750
+
Pro
GGG
[ENA]
¢þ
>WENV182838787
OKGX01000053
[OKGX] human gut metagenome; human gut
4774
4685
-
Ser
CGA
[ENA]
¢þ
>WENV182838816
OKGX01000236
[OKGX] human gut metagenome; human gut
5135
5208
+
Gly
CCC
[ENA]
¢þ
>WENV182838780
OKGX01000037
[OKGX] human gut metagenome; human gut
5159
5072
-
Ser
TGA
[ENA]
¢þ
>WENV182838817
OKGX01000267
[OKGX] human gut metagenome; human gut
5179
5253
+
Gly
TCC
[ENA]
¢þ
>WENV182838783
OKGX01000053
[OKGX] human gut metagenome; human gut
5766
5841
+
Asn
GTT
[ENA]
¢þ
>WENV182838778
OKGX01000032
[OKGX] human gut metagenome; human gut
8471
8396
-
Phe
GAA
[ENA]
¢þ
>WENV182838775
OKGX01000015
[OKGX] human gut metagenome; human gut
8608
8684
+
Val
GAC
[ENA]
¢þ
>WENV182838784
OKGX01000053
[OKGX] human gut metagenome; human gut
9256
9331
+
Asn
GTT
[ENA]
¢þ
>WENV182838806
OKGX01000157
[OKGX] human gut metagenome; human gut
9414
9490
+
Asp
GTC
[ENA]
¢þ
>WENV182838810
OKGX01000177
[OKGX] human gut metagenome; human gut
10477
10553
+
Met
CAT
[ENA]
¢þ
>WENV182838803
OKGX01000109
[OKGX] human gut metagenome; human gut
10507
10432
-
Phe
GAA
[ENA]
¢þ
>WENV182838811
OKGX01000177
[OKGX] human gut metagenome; human gut
10563
10647
+
Leu
TAG
[ENA]
¢þ
>WENV182838809
OKGX01000174
[OKGX] human gut metagenome; human gut
10574
10498
-
Pro
CGG
[ENA]
¢þ
>WENV182838812
OKGX01000177
[OKGX] human gut metagenome; human gut
10671
10745
+
Gln
TTG
[ENA]
¢þ
>WENV182838813
OKGX01000177
[OKGX] human gut metagenome; human gut
10782
10856
+
Gln
TTG
[ENA]
¢þ
>WENV182838814
OKGX01000177
[OKGX] human gut metagenome; human gut
10880
10956
+
Met
CAT
[ENA]
¢þ
>WENV182838805
OKGX01000143
[OKGX] human gut metagenome; human gut
11304
11379
+
Thr
CGT
[ENA]
¢þ
>WENV182838804
OKGX01000116
[OKGX] human gut metagenome; human gut
11543
11617
+
Arg
CCT
[ENA]
¢þ
>WENV182838793
OKGX01000082
[OKGX] human gut metagenome; human gut
11790
11714
-
Pro
TGG
[ENA]
¢þ
>WENV182838792
OKGX01000082
[OKGX] human gut metagenome; human gut
11919
11833
-
Leu
CAG
[ENA]
¢þ
>WENV182838791
OKGX01000082
[OKGX] human gut metagenome; human gut
12018
11943
-
His
GTG
[ENA]
¢þ
>WENV182838790
OKGX01000082
[OKGX] human gut metagenome; human gut
12150
12074
-
Arg
CCG
[ENA]
¢þ
>WENV182838801
OKGX01000103
[OKGX] human gut metagenome; human gut
13122
13216
+
SeC
TCA
[ENA]
¢þ
>WENV182838782
OKGX01000048
[OKGX] human gut metagenome; human gut
16008
15932
-
fMet
CAT
[ENA]
¢þ
>WENV182838786
OKGX01000053
[OKGX] human gut metagenome; human gut
18159
18084
-
Asn
GTT
[ENA]
¢þ
>WENV182838789
OKGX01000075
[OKGX] human gut metagenome; human gut
19678
19602
-
Arg
ACG
[ENA]
¢þ
>WENV182838785
OKGX01000053
[OKGX] human gut metagenome; human gut
19916
19991
+
Asn
GTT
[ENA]
¢þ
>WENV182838781
OKGX01000048
[OKGX] human gut metagenome; human gut
20041
19955
-
Leu
GAG
[ENA]
¢þ
>WENV182838774
OKGX01000001
[OKGX] human gut metagenome; human gut
32899
32824
-
Ile2
CAT
[ENA]
¢þ
>WENV182838776
OKGX01000020
[OKGX] human gut metagenome; human gut
35264
35339
+
Lys
TTT
[ENA]
¢þ
>WENV182838777
OKGX01000020
[OKGX] human gut metagenome; human gut
35465
35540
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK