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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKHC] human gut metagenome; human gut
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182839296
OKHC01000338
[OKHC] human gut metagenome; human gut
1
74
+
Glu
TTC
[ENA]
¢þ
>WENV182839250
OKHC01000023
[OKHC] human gut metagenome; human gut
1
75
+
Gln
CTG
[ENA]
¢þ
>WENV182839274
OKHC01000098
[OKHC] human gut metagenome; human gut
8
83
+
Phe
GAA
[ENA]
¢þ
>WENV182839298
OKHC01000381
[OKHC] human gut metagenome; human gut
37
108
+
Trp
CCA
[ENA]
¢þ
>WENV182839269
OKHC01000078
[OKHC] human gut metagenome; human gut
80
4
-
Arg
ACG
[ENA]
¢þ
>WENV182839305
OKHC01001064
[OKHC] human gut metagenome; human gut
80
156
+
Ile
GAT
[ENA]
¢þ
>WENV182839251
OKHC01000023
[OKHC] human gut metagenome; human gut
109
183
+
Gln
CTG
[ENA]
¢þ
>WENV182839248
OKHC01000020
[OKHC] human gut metagenome; human gut
134
59
-
Val
TAC
[ENA]
¢þ
>WENV182839268
OKHC01000078
[OKHC] human gut metagenome; human gut
177
85
-
Ser
GCT
[ENA]
¢þ
>WENV182839306
OKHC01001064
[OKHC] human gut metagenome; human gut
271
346
+
Ala
TGC
[ENA]
¢þ
>WENV182839247
OKHC01000020
[OKHC] human gut metagenome; human gut
327
252
-
Lys
TTT
[ENA]
¢þ
>WENV182839303
OKHC01000879
[OKHC] human gut metagenome; human gut
420
509
+
Ser
CGA
[ENA]
¢þ
>WENV182839299
OKHC01000439
[OKHC] human gut metagenome; human gut
475
548
+
Arg
CCG
[ENA]
¢þ
>WENV182839301
OKHC01000540
[OKHC] human gut metagenome; human gut
488
561
+
Ile2
CAT
[ENA]
¢þ
>WENV182839304
OKHC01000903
[OKHC] human gut metagenome; human gut
541
466
-
Arg
CCT
[ENA]
¢þ
>WENV182839267
OKHC01000075
[OKHC] human gut metagenome; human gut
561
486
-
Thr
CGT
[ENA]
¢þ
>WENV182839285
OKHC01000195
[OKHC] human gut metagenome; human gut
703
618
-
Leu
CAA
[ENA]
¢þ
>WENV182839284
OKHC01000195
[OKHC] human gut metagenome; human gut
786
716
-
Cys
GCA
[ENA]
¢þ
>WENV182839279
OKHC01000137
[OKHC] human gut metagenome; human gut
825
898
+
Ile2
CAT
[ENA]
¢þ
>WENV182839302
OKHC01000824
[OKHC] human gut metagenome; human gut
862
937
+
Glu
TTC
[ENA]
¢þ
>WENV182839283
OKHC01000195
[OKHC] human gut metagenome; human gut
884
811
-
Gln
TTG
[ENA]
¢þ
>WENV182839282
OKHC01000195
[OKHC] human gut metagenome; human gut
970
897
-
His
GTG
[ENA]
¢þ
>WENV182839281
OKHC01000195
[OKHC] human gut metagenome; human gut
1080
1007
-
Trp
CCA
[ENA]
¢þ
>WENV182839280
OKHC01000195
[OKHC] human gut metagenome; human gut
1166
1084
-
Tyr
GTA
[ENA]
¢þ
>WENV182839261
OKHC01000032
[OKHC] human gut metagenome; human gut
1481
1406
-
Asn
GTT
[ENA]
¢þ
>WENV182839286
OKHC01000225
[OKHC] human gut metagenome; human gut
1800
1725
-
Arg
TCT
[ENA]
¢þ
>WENV182839300
OKHC01000449
[OKHC] human gut metagenome; human gut
2743
2830
+
Ser
GGA
[ENA]
¢þ
>WENV182839287
OKHC01000282
[OKHC] human gut metagenome; human gut
3032
2960
-
Thr
GGT
[ENA]
¢þ
>WENV182839297
OKHC01000379
[OKHC] human gut metagenome; human gut
3313
3386
+
Lys
CTT
[ENA]
¢þ
>WENV182839295
OKHC01000301
[OKHC] human gut metagenome; human gut
4202
4129
-
Pro
TGG
[ENA]
¢þ
>WENV182839294
OKHC01000301
[OKHC] human gut metagenome; human gut
4365
4292
-
Arg
ACG
[ENA]
¢þ
>WENV182839293
OKHC01000301
[OKHC] human gut metagenome; human gut
4465
4380
-
Leu
TAA
[ENA]
¢þ
>WENV182839292
OKHC01000301
[OKHC] human gut metagenome; human gut
4552
4481
-
Gly
GCC
[ENA]
¢þ
>WENV182839291
OKHC01000301
[OKHC] human gut metagenome; human gut
4632
4557
-
Thr
TGT
[ENA]
¢þ
>WENV182839290
OKHC01000301
[OKHC] human gut metagenome; human gut
4721
4638
-
Leu
TAG
[ENA]
¢þ
>WENV182839289
OKHC01000301
[OKHC] human gut metagenome; human gut
4810
4736
-
Lys
TTT
[ENA]
¢þ
>WENV182839288
OKHC01000301
[OKHC] human gut metagenome; human gut
4889
4815
-
Val
TAC
[ENA]
¢þ
>WENV182839245
OKHC01000019
[OKHC] human gut metagenome; human gut
4971
4887
-
Leu
CAA
[ENA]
¢þ
>WENV182839237
OKHC01000013
[OKHC] human gut metagenome; human gut
5126
5039
-
Ser
TGA
[ENA]
¢þ
>WENV182839278
OKHC01000121
[OKHC] human gut metagenome; human gut
8707
8779
+
Thr
CGT
[ENA]
¢þ
>WENV182839271
OKHC01000091
[OKHC] human gut metagenome; human gut
9763
9839
+
Asp
GTC
[ENA]
¢þ
>WENV182839244
OKHC01000015
[OKHC] human gut metagenome; human gut
10196
10110
-
Leu
GAG
[ENA]
¢þ
>WENV182839228
OKHC01000002
[OKHC] human gut metagenome; human gut
10759
10684
-
Phe
GAA
[ENA]
¢þ
>WENV182839260
OKHC01000032
[OKHC] human gut metagenome; human gut
10768
10843
+
Asn
GTT
[ENA]
¢þ
>WENV182839273
OKHC01000094
[OKHC] human gut metagenome; human gut
12262
12187
-
Ala
GGC
[ENA]
¢þ
>WENV182839272
OKHC01000094
[OKHC] human gut metagenome; human gut
12378
12303
-
Ala
GGC
[ENA]
¢þ
>WENV182839259
OKHC01000031
[OKHC] human gut metagenome; human gut
12657
12581
-
Val
GAC
[ENA]
¢þ
>WENV182839277
OKHC01000109
[OKHC] human gut metagenome; human gut
12711
12635
-
Arg
ACG
[ENA]
¢þ
>WENV182839276
OKHC01000109
[OKHC] human gut metagenome; human gut
12833
12757
-
Arg
ACG
[ENA]
¢þ
>WENV182839275
OKHC01000105
[OKHC] human gut metagenome; human gut
13139
13068
-
Trp
CCA
[ENA]
¢þ
>WENV182839264
OKHC01000053
[OKHC] human gut metagenome; human gut
17817
17741
-
Arg
TCT
[ENA]
¢þ
>WENV182839270
OKHC01000079
[OKHC] human gut metagenome; human gut
19717
19642
-
Asn
GTT
[ENA]
¢þ
>WENV182839233
OKHC01000006
[OKHC] human gut metagenome; human gut
20360
20285
-
Ile2
CAT
[ENA]
¢þ
>WENV182839265
OKHC01000060
[OKHC] human gut metagenome; human gut
20869
20943
+
Arg
CCT
[ENA]
¢þ
>WENV182839232
OKHC01000004
[OKHC] human gut metagenome; human gut
23008
22933
-
Lys
CTT
[ENA]
¢þ
>WENV182839263
OKHC01000051
[OKHC] human gut metagenome; human gut
25040
24954
-
Leu
CAG
[ENA]
¢þ
>WENV182839266
OKHC01000070
[OKHC] human gut metagenome; human gut
25507
25582
+
Gly
GCC
[ENA]
¢þ
>WENV182839262
OKHC01000050
[OKHC] human gut metagenome; human gut
36317
36404
+
Ser
GGA
[ENA]
¢þ
>WENV182839257
OKHC01000026
[OKHC] human gut metagenome; human gut
43653
43737
+
Tyr
GTA
[ENA]
¢þ
>WENV182839258
OKHC01000026
[OKHC] human gut metagenome; human gut
43880
43964
+
Tyr
GTA
[ENA]
¢þ
>WENV182839243
OKHC01000014
[OKHC] human gut metagenome; human gut
58418
58342
-
Pro
TGG
[ENA]
¢þ
>WENV182839242
OKHC01000014
[OKHC] human gut metagenome; human gut
58548
58462
-
Leu
CAG
[ENA]
¢þ
>WENV182839241
OKHC01000014
[OKHC] human gut metagenome; human gut
58645
58570
-
His
GTG
[ENA]
¢þ
>WENV182839240
OKHC01000014
[OKHC] human gut metagenome; human gut
58790
58714
-
Arg
CCG
[ENA]
¢þ
>WENV182839236
OKHC01000011
[OKHC] human gut metagenome; human gut
62611
62522
-
Ser
CGA
[ENA]
¢þ
>WENV182839234
OKHC01000011
[OKHC] human gut metagenome; human gut
63602
63677
+
Asn
GTT
[ENA]
¢þ
>WENV182839249
OKHC01000022
[OKHC] human gut metagenome; human gut
67428
67523
+
SeC
TCA
[ENA]
¢þ
>WENV182839252
OKHC01000024
[OKHC] human gut metagenome; human gut
70949
71025
+
Pro
CGG
[ENA]
¢þ
>WENV182839253
OKHC01000024
[OKHC] human gut metagenome; human gut
73190
73265
+
Thr
TGT
[ENA]
¢þ
>WENV182839254
OKHC01000024
[OKHC] human gut metagenome; human gut
73274
73358
+
Tyr
GTA
[ENA]
¢þ
>WENV182839255
OKHC01000024
[OKHC] human gut metagenome; human gut
73472
73546
+
Gly
TCC
[ENA]
¢þ
>WENV182839256
OKHC01000024
[OKHC] human gut metagenome; human gut
73552
73627
+
Thr
GGT
[ENA]
¢þ
>WENV182839246
OKHC01000020
[OKHC] human gut metagenome; human gut
85361
85437
+
Met
CAT
[ENA]
¢þ
>WENV182839227
OKHC01000002
[OKHC] human gut metagenome; human gut
86162
86235
+
Gly
CCC
[ENA]
¢þ
>WENV182839235
OKHC01000011
[OKHC] human gut metagenome; human gut
87880
87955
+
Asn
GTT
[ENA]
¢þ
>WENV182839239
OKHC01000014
[OKHC] human gut metagenome; human gut
93109
93034
-
Trp
CCA
[ENA]
¢þ
>WENV182839238
OKHC01000014
[OKHC] human gut metagenome; human gut
93194
93118
-
Asp
GTC
[ENA]
¢þ
>WENV182839226
OKHC01000001
[OKHC] human gut metagenome; human gut
126277
126201
-
Pro
GGG
[ENA]
¢þ
>WENV182839231
OKHC01000003
[OKHC] human gut metagenome; human gut
140414
140328
-
Leu
TAA
[ENA]
¢þ
>WENV182839230
OKHC01000003
[OKHC] human gut metagenome; human gut
140501
140428
-
Cys
GCA
[ENA]
¢þ
>WENV182839229
OKHC01000003
[OKHC] human gut metagenome; human gut
140617
140542
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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