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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKHH] human gut metagenome; human gut
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182839862
OKHH01000092
[OKHH] human gut metagenome; human gut
177
102
-
Val
TAC
[ENA]
¢þ
>WENV182839905
OKHH01000737
[OKHH] human gut metagenome; human gut
193
106
-
Ser
TGA
[ENA]
¢þ
>WENV182839868
OKHH01000208
[OKHH] human gut metagenome; human gut
211
295
+
Leu
CAA
[ENA]
¢þ
>WENV182839875
OKHH01000264
[OKHH] human gut metagenome; human gut
256
181
-
Lys
TTT
[ENA]
¢þ
>WENV182839888
OKHH01000466
[OKHH] human gut metagenome; human gut
273
197
-
Arg
ACG
[ENA]
¢þ
>WENV182839895
OKHH01000534
[OKHH] human gut metagenome; human gut
353
278
-
Thr
CGT
[ENA]
¢þ
>WENV182839887
OKHH01000466
[OKHH] human gut metagenome; human gut
370
278
-
Ser
GCT
[ENA]
¢þ
>WENV182839904
OKHH01000736
[OKHH] human gut metagenome; human gut
612
687
+
Thr
TGT
[ENA]
¢þ
>WENV182839877
OKHH01000356
[OKHH] human gut metagenome; human gut
624
549
-
Asn
GTT
[ENA]
¢þ
>WENV182839896
OKHH01000544
[OKHH] human gut metagenome; human gut
668
752
+
Tyr
GTA
[ENA]
¢þ
>WENV182839859
OKHH01000087
[OKHH] human gut metagenome; human gut
698
622
-
Pro
CGG
[ENA]
¢þ
>WENV182839897
OKHH01000544
[OKHH] human gut metagenome; human gut
968
1052
+
Tyr
GTA
[ENA]
¢þ
>WENV182839898
OKHH01000553
[OKHH] human gut metagenome; human gut
1055
1130
+
Asn
GTT
[ENA]
¢þ
>WENV182839881
OKHH01000382
[OKHH] human gut metagenome; human gut
1182
1257
+
Gly
GCC
[ENA]
¢þ
>WENV182839874
OKHH01000231
[OKHH] human gut metagenome; human gut
1296
1222
-
Gln
CTG
[ENA]
¢þ
>WENV182839882
OKHH01000382
[OKHH] human gut metagenome; human gut
1298
1371
+
Cys
GCA
[ENA]
¢þ
>WENV182839865
OKHH01000164
[OKHH] human gut metagenome; human gut
1330
1254
-
Arg
TCT
[ENA]
¢þ
>WENV182839886
OKHH01000400
[OKHH] human gut metagenome; human gut
1345
1421
+
Pro
GGG
[ENA]
¢þ
>WENV182839899
OKHH01000645
[OKHH] human gut metagenome; human gut
1380
1456
+
Arg
CCG
[ENA]
¢þ
>WENV182839883
OKHH01000382
[OKHH] human gut metagenome; human gut
1385
1471
+
Leu
TAA
[ENA]
¢þ
>WENV182839873
OKHH01000231
[OKHH] human gut metagenome; human gut
1420
1344
-
Met
CAT
[ENA]
¢þ
>WENV182839906
OKHH01000797
[OKHH] human gut metagenome; human gut
1478
1554
+
Val
GAC
[ENA]
¢þ
>WENV182839900
OKHH01000645
[OKHH] human gut metagenome; human gut
1512
1587
+
His
GTG
[ENA]
¢þ
>WENV182839872
OKHH01000231
[OKHH] human gut metagenome; human gut
1518
1444
-
Gln
TTG
[ENA]
¢þ
>WENV182839901
OKHH01000645
[OKHH] human gut metagenome; human gut
1611
1697
+
Leu
CAG
[ENA]
¢þ
>WENV182839871
OKHH01000231
[OKHH] human gut metagenome; human gut
1629
1555
-
Gln
TTG
[ENA]
¢þ
>WENV182839870
OKHH01000231
[OKHH] human gut metagenome; human gut
1737
1653
-
Leu
TAG
[ENA]
¢þ
>WENV182839902
OKHH01000645
[OKHH] human gut metagenome; human gut
1740
1816
+
Pro
TGG
[ENA]
¢þ
>WENV182839869
OKHH01000231
[OKHH] human gut metagenome; human gut
1822
1746
-
Met
CAT
[ENA]
¢þ
>WENV182839903
OKHH01000711
[OKHH] human gut metagenome; human gut
1954
1878
-
Asp
GTC
[ENA]
¢þ
>WENV182839856
OKHH01000004
[OKHH] human gut metagenome; human gut
2116
2202
+
Leu
GAG
[ENA]
¢þ
>WENV182839876
OKHH01000356
[OKHH] human gut metagenome; human gut
2382
2457
+
Asn
GTT
[ENA]
¢þ
>WENV182839884
OKHH01000392
[OKHH] human gut metagenome; human gut
2400
2476
+
fMet
CAT
[ENA]
¢þ
>WENV182839885
OKHH01000392
[OKHH] human gut metagenome; human gut
2510
2586
+
fMet
CAT
[ENA]
¢þ
>WENV182839890
OKHH01000492
[OKHH] human gut metagenome; human gut
2686
2761
+
Thr
TGT
[ENA]
¢þ
>WENV182839891
OKHH01000492
[OKHH] human gut metagenome; human gut
2772
2856
+
Tyr
GTA
[ENA]
¢þ
>WENV182839860
OKHH01000092
[OKHH] human gut metagenome; human gut
2876
2951
+
Ala
GGC
[ENA]
¢þ
>WENV182839892
OKHH01000492
[OKHH] human gut metagenome; human gut
2972
3046
+
Gly
TCC
[ENA]
¢þ
>WENV182839861
OKHH01000092
[OKHH] human gut metagenome; human gut
2993
3068
+
Ala
GGC
[ENA]
¢þ
>WENV182839894
OKHH01000530
[OKHH] human gut metagenome; human gut
3017
3104
+
Ser
GGA
[ENA]
¢þ
>WENV182839893
OKHH01000492
[OKHH] human gut metagenome; human gut
3052
3127
+
Thr
GGT
[ENA]
¢þ
>WENV182839889
OKHH01000485
[OKHH] human gut metagenome; human gut
3434
3359
-
Trp
CCA
[ENA]
¢þ
>WENV182839879
OKHH01000363
[OKHH] human gut metagenome; human gut
4750
4674
-
Arg
ACG
[ENA]
¢þ
>WENV182839880
OKHH01000377
[OKHH] human gut metagenome; human gut
4798
4870
+
Ile2
CAT
[ENA]
¢þ
>WENV182839878
OKHH01000363
[OKHH] human gut metagenome; human gut
5055
4979
-
Arg
ACG
[ENA]
¢þ
>WENV182839863
OKHH01000101
[OKHH] human gut metagenome; human gut
5423
5517
+
SeC
TCA
[ENA]
¢þ
>WENV182839867
OKHH01000206
[OKHH] human gut metagenome; human gut
5974
5888
-
Leu
CAG
[ENA]
¢þ
>WENV182839866
OKHH01000206
[OKHH] human gut metagenome; human gut
6092
6006
-
Leu
CAG
[ENA]
¢þ
>WENV182839857
OKHH01000004
[OKHH] human gut metagenome; human gut
6133
6209
+
fMet
CAT
[ENA]
¢þ
>WENV182839864
OKHH01000162
[OKHH] human gut metagenome; human gut
7731
7657
-
Arg
CCT
[ENA]
¢þ
>WENV182839858
OKHH01000080
[OKHH] human gut metagenome; human gut
10200
10273
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK