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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKHJ] human gut metagenome; human gut
HIT:
81 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182839988
OKHJ01000023
[OKHJ] human gut metagenome; human gut
71
147
+
Val
GAC
[ENA]
¢þ
>WENV182839987
OKHJ01000018
[OKHJ] human gut metagenome; human gut
87
173
+
Leu
CAG
[ENA]
¢þ
>WENV182840018
OKHJ01000058
[OKHJ] human gut metagenome; human gut
95
170
+
Ala
GGC
[ENA]
¢þ
>WENV182839990
OKHJ01000025
[OKHJ] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182840029
OKHJ01000145
[OKHJ] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182839989
OKHJ01000023
[OKHJ] human gut metagenome; human gut
152
228
+
Val
GAC
[ENA]
¢þ
>WENV182840044
OKHJ01002346
[OKHJ] human gut metagenome; human gut
265
340
+
Ile2
CAT
[ENA]
¢þ
>WENV182840017
OKHJ01000049
[OKHJ] human gut metagenome; human gut
281
205
-
Pro
CGG
[ENA]
¢þ
>WENV182840028
OKHJ01000145
[OKHJ] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182840027
OKHJ01000145
[OKHJ] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182840043
OKHJ01000875
[OKHJ] human gut metagenome; human gut
492
563
+
Trp
CCA
[ENA]
¢þ
>WENV182840021
OKHJ01000107
[OKHJ] human gut metagenome; human gut
815
740
-
Arg
TCT
[ENA]
¢þ
>WENV182840032
OKHJ01000323
[OKHJ] human gut metagenome; human gut
905
977
+
Thr
GGT
[ENA]
¢þ
>WENV182840042
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1265
1192
-
Glu
TTC
[ENA]
¢þ
>WENV182840041
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1368
1279
-
Ser
GCT
[ENA]
¢þ
>WENV182840040
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1451
1378
-
Ile
GAT
[ENA]
¢þ
>WENV182840039
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1535
1465
-
Gly
TCC
[ENA]
¢þ
>WENV182840038
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1613
1537
-
Asp
GTC
[ENA]
¢þ
>WENV182840037
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1726
1651
-
fMet
CAT
[ENA]
¢þ
>WENV182840019
OKHJ01000080
[OKHJ] human gut metagenome; human gut
1830
1755
-
Asn
GTT
[ENA]
¢þ
>WENV182840036
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1848
1759
-
Ser
TGA
[ENA]
¢þ
>WENV182840035
OKHJ01000373
[OKHJ] human gut metagenome; human gut
1956
1881
-
Ile2
CAT
[ENA]
¢þ
>WENV182840034
OKHJ01000373
[OKHJ] human gut metagenome; human gut
2050
1975
-
Met
CAT
[ENA]
¢þ
>WENV182840033
OKHJ01000373
[OKHJ] human gut metagenome; human gut
2145
2073
-
Ala
TGC
[ENA]
¢þ
>WENV182840030
OKHJ01000233
[OKHJ] human gut metagenome; human gut
2724
2649
-
Arg
CCT
[ENA]
¢þ
>WENV182840031
OKHJ01000254
[OKHJ] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182840026
OKHJ01000132
[OKHJ] human gut metagenome; human gut
3711
3638
-
Pro
TGG
[ENA]
¢þ
>WENV182840025
OKHJ01000132
[OKHJ] human gut metagenome; human gut
3874
3801
-
Arg
ACG
[ENA]
¢þ
>WENV182840024
OKHJ01000132
[OKHJ] human gut metagenome; human gut
3974
3889
-
Leu
TAA
[ENA]
¢þ
>WENV182840023
OKHJ01000132
[OKHJ] human gut metagenome; human gut
4061
3990
-
Gly
GCC
[ENA]
¢þ
>WENV182840022
OKHJ01000132
[OKHJ] human gut metagenome; human gut
4139
4064
-
Thr
TGT
[ENA]
¢þ
>WENV182840020
OKHJ01000085
[OKHJ] human gut metagenome; human gut
5486
5575
+
Ser
CGA
[ENA]
¢þ
>WENV182839970
OKHJ01000003
[OKHJ] human gut metagenome; human gut
8232
8307
+
Thr
TGT
[ENA]
¢þ
>WENV182840015
OKHJ01000036
[OKHJ] human gut metagenome; human gut
8844
8768
-
fMet
CAT
[ENA]
¢þ
>WENV182840016
OKHJ01000039
[OKHJ] human gut metagenome; human gut
9343
9419
+
Arg
TCT
[ENA]
¢þ
>WENV182839995
OKHJ01000026
[OKHJ] human gut metagenome; human gut
9426
9502
+
Asp
GTC
[ENA]
¢þ
>WENV182839964
OKHJ01000002
[OKHJ] human gut metagenome; human gut
9554
9627
+
Gly
CCC
[ENA]
¢þ
>WENV182840012
OKHJ01000032
[OKHJ] human gut metagenome; human gut
10257
10183
-
Gln
CTG
[ENA]
¢þ
>WENV182840011
OKHJ01000032
[OKHJ] human gut metagenome; human gut
10407
10333
-
Gln
CTG
[ENA]
¢þ
>WENV182840010
OKHJ01000032
[OKHJ] human gut metagenome; human gut
10531
10455
-
Met
CAT
[ENA]
¢þ
>WENV182840009
OKHJ01000032
[OKHJ] human gut metagenome; human gut
10629
10555
-
Gln
TTG
[ENA]
¢þ
>WENV182840008
OKHJ01000032
[OKHJ] human gut metagenome; human gut
10740
10666
-
Gln
TTG
[ENA]
¢þ
>WENV182840007
OKHJ01000032
[OKHJ] human gut metagenome; human gut
10848
10764
-
Leu
TAG
[ENA]
¢þ
>WENV182840006
OKHJ01000032
[OKHJ] human gut metagenome; human gut
10933
10857
-
Met
CAT
[ENA]
¢þ
>WENV182840014
OKHJ01000036
[OKHJ] human gut metagenome; human gut
12861
12775
-
Leu
GAG
[ENA]
¢þ
>WENV182839985
OKHJ01000014
[OKHJ] human gut metagenome; human gut
15302
15227
-
Phe
GAA
[ENA]
¢þ
>WENV182839981
OKHJ01000013
[OKHJ] human gut metagenome; human gut
27882
27798
-
Leu
CAA
[ENA]
¢þ
>WENV182839980
OKHJ01000012
[OKHJ] human gut metagenome; human gut
37886
37792
-
SeC
TCA
[ENA]
¢þ
>WENV182839986
OKHJ01000017
[OKHJ] human gut metagenome; human gut
37944
38020
+
Pro
GGG
[ENA]
¢þ
>WENV182839991
OKHJ01000025
[OKHJ] human gut metagenome; human gut
38213
38289
+
Arg
CCG
[ENA]
¢þ
>WENV182839992
OKHJ01000025
[OKHJ] human gut metagenome; human gut
38345
38420
+
His
GTG
[ENA]
¢þ
>WENV182839993
OKHJ01000025
[OKHJ] human gut metagenome; human gut
38444
38530
+
Leu
CAG
[ENA]
¢þ
>WENV182839994
OKHJ01000025
[OKHJ] human gut metagenome; human gut
38573
38649
+
Pro
TGG
[ENA]
¢þ
>WENV182839997
OKHJ01000027
[OKHJ] human gut metagenome; human gut
38889
38815
-
Arg
CCT
[ENA]
¢þ
>WENV182840002
OKHJ01000030
[OKHJ] human gut metagenome; human gut
51420
51345
-
Asn
GTT
[ENA]
¢þ
>WENV182839998
OKHJ01000030
[OKHJ] human gut metagenome; human gut
53178
53253
+
Asn
GTT
[ENA]
¢þ
>WENV182839982
OKHJ01000014
[OKHJ] human gut metagenome; human gut
56268
56343
+
Gly
GCC
[ENA]
¢þ
>WENV182839983
OKHJ01000014
[OKHJ] human gut metagenome; human gut
56412
56487
+
Gly
GCC
[ENA]
¢þ
>WENV182839984
OKHJ01000014
[OKHJ] human gut metagenome; human gut
56556
56631
+
Gly
GCC
[ENA]
¢þ
>WENV182839971
OKHJ01000003
[OKHJ] human gut metagenome; human gut
56770
56845
+
Gly
GCC
[ENA]
¢þ
>WENV182839972
OKHJ01000003
[OKHJ] human gut metagenome; human gut
56886
56959
+
Cys
GCA
[ENA]
¢þ
>WENV182839973
OKHJ01000003
[OKHJ] human gut metagenome; human gut
56973
57059
+
Leu
TAA
[ENA]
¢þ
>WENV182840001
OKHJ01000030
[OKHJ] human gut metagenome; human gut
62175
62100
-
Asn
GTT
[ENA]
¢þ
>WENV182840013
OKHJ01000035
[OKHJ] human gut metagenome; human gut
63192
63278
+
Leu
CAG
[ENA]
¢þ
>WENV182839977
OKHJ01000006
[OKHJ] human gut metagenome; human gut
65848
65773
-
Ile2
CAT
[ENA]
¢þ
>WENV182840000
OKHJ01000030
[OKHJ] human gut metagenome; human gut
67416
67341
-
Asn
GTT
[ENA]
¢þ
>WENV182839999
OKHJ01000030
[OKHJ] human gut metagenome; human gut
68408
68497
+
Ser
CGA
[ENA]
¢þ
>WENV182840003
OKHJ01000032
[OKHJ] human gut metagenome; human gut
69553
69628
+
Lys
TTT
[ENA]
¢þ
>WENV182840004
OKHJ01000032
[OKHJ] human gut metagenome; human gut
69754
69829
+
Val
TAC
[ENA]
¢þ
>WENV182840005
OKHJ01000032
[OKHJ] human gut metagenome; human gut
69833
69908
+
Lys
TTT
[ENA]
¢þ
>WENV182839996
OKHJ01000026
[OKHJ] human gut metagenome; human gut
76236
76161
-
Thr
CGT
[ENA]
¢þ
>WENV182839978
OKHJ01000009
[OKHJ] human gut metagenome; human gut
84123
84210
+
Ser
TGA
[ENA]
¢þ
>WENV182839979
OKHJ01000009
[OKHJ] human gut metagenome; human gut
131899
131812
-
Ser
GGA
[ENA]
¢þ
>WENV182839976
OKHJ01000006
[OKHJ] human gut metagenome; human gut
135499
135424
-
Phe
GAA
[ENA]
¢þ
>WENV182839969
OKHJ01000002
[OKHJ] human gut metagenome; human gut
148215
148139
-
fMet
CAT
[ENA]
¢þ
>WENV182839968
OKHJ01000002
[OKHJ] human gut metagenome; human gut
148325
148249
-
fMet
CAT
[ENA]
¢þ
>WENV182839967
OKHJ01000002
[OKHJ] human gut metagenome; human gut
148435
148359
-
fMet
CAT
[ENA]
¢þ
>WENV182839975
OKHJ01000003
[OKHJ] human gut metagenome; human gut
280315
280231
-
Tyr
GTA
[ENA]
¢þ
>WENV182839974
OKHJ01000003
[OKHJ] human gut metagenome; human gut
280615
280531
-
Tyr
GTA
[ENA]
¢þ
>WENV182839965
OKHJ01000002
[OKHJ] human gut metagenome; human gut
298709
298801
+
Ser
GCT
[ENA]
¢þ
>WENV182839966
OKHJ01000002
[OKHJ] human gut metagenome; human gut
298806
298882
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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