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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKHL] human gut metagenome; human gut
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182840288
OKHL01002945
[OKHL] human gut metagenome; human gut
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV182840287
OKHL01002576
[OKHL] human gut metagenome; human gut
77
150
+
Arg
ACG
[ENA]
¢þ
>WENV182840286
OKHL01002442
[OKHL] human gut metagenome; human gut
111
184
+
Lys
TTT
[ENA]
¢þ
>WENV182840290
OKHL01003360
[OKHL] human gut metagenome; human gut
112
186
+
Thr
TGT
[ENA]
¢þ
>WENV182840292
OKHL01004396
[OKHL] human gut metagenome; human gut
119
44
-
Thr
TGT
[ENA]
¢þ
>WENV182840266
OKHL01000568
[OKHL] human gut metagenome; human gut
138
65
-
Gly
TCC
[ENA]
¢þ
>WENV182840282
OKHL01001982
[OKHL] human gut metagenome; human gut
153
79
-
Gln
TTG
[ENA]
¢þ
>WENV182840251
OKHL01000009
[OKHL] human gut metagenome; human gut
172
86
-
Leu
CAG
[ENA]
¢þ
>WENV182840293
OKHL01004433
[OKHL] human gut metagenome; human gut
218
292
+
Arg
TCT
[ENA]
¢þ
>WENV182840265
OKHL01000568
[OKHL] human gut metagenome; human gut
225
142
-
Leu
TAG
[ENA]
¢þ
>WENV182840281
OKHL01001982
[OKHL] human gut metagenome; human gut
261
177
-
Leu
TAG
[ENA]
¢þ
>WENV182840264
OKHL01000568
[OKHL] human gut metagenome; human gut
305
230
-
Lys
TTT
[ENA]
¢þ
>WENV182840280
OKHL01001982
[OKHL] human gut metagenome; human gut
346
270
-
Met
CAT
[ENA]
¢þ
>WENV182840283
OKHL01002152
[OKHL] human gut metagenome; human gut
366
442
+
fMet
CAT
[ENA]
¢þ
>WENV182840277
OKHL01001548
[OKHL] human gut metagenome; human gut
372
299
-
Ala
GGC
[ENA]
¢þ
>WENV182840263
OKHL01000568
[OKHL] human gut metagenome; human gut
383
309
-
Gln
TTG
[ENA]
¢þ
>WENV182840291
OKHL01003786
[OKHL] human gut metagenome; human gut
414
489
+
Ile2
CAT
[ENA]
¢þ
>WENV182840274
OKHL01001091
[OKHL] human gut metagenome; human gut
450
376
-
Val
CAC
[ENA]
¢þ
>WENV182840262
OKHL01000568
[OKHL] human gut metagenome; human gut
464
389
-
His
GTG
[ENA]
¢þ
>WENV182840289
OKHL01003035
[OKHL] human gut metagenome; human gut
521
595
+
Ile2
CAT
[ENA]
¢þ
>WENV182840261
OKHL01000568
[OKHL] human gut metagenome; human gut
547
472
-
Lys
CTT
[ENA]
¢þ
>WENV182840273
OKHL01001091
[OKHL] human gut metagenome; human gut
570
498
-
Val
GAC
[ENA]
¢þ
>WENV182840267
OKHL01000581
[OKHL] human gut metagenome; human gut
611
687
+
Asp
GTC
[ENA]
¢þ
>WENV182840285
OKHL01002355
[OKHL] human gut metagenome; human gut
623
549
-
Gln
CTG
[ENA]
¢þ
>WENV182840269
OKHL01000998
[OKHL] human gut metagenome; human gut
644
560
-
Tyr
GTA
[ENA]
¢þ
>WENV182840275
OKHL01001313
[OKHL] human gut metagenome; human gut
654
730
+
Pro
GGG
[ENA]
¢þ
>WENV182840270
OKHL01001031
[OKHL] human gut metagenome; human gut
671
746
+
Asn
GTT
[ENA]
¢þ
>WENV182840272
OKHL01001091
[OKHL] human gut metagenome; human gut
689
616
-
Gly
GCC
[ENA]
¢þ
>WENV182840284
OKHL01002355
[OKHL] human gut metagenome; human gut
735
662
-
Glu
CTC
[ENA]
¢þ
>WENV182840279
OKHL01001775
[OKHL] human gut metagenome; human gut
995
921
-
Val
TAC
[ENA]
¢þ
>WENV182840278
OKHL01001728
[OKHL] human gut metagenome; human gut
995
921
-
Leu
CAA
[ENA]
¢þ
>WENV182840276
OKHL01001495
[OKHL] human gut metagenome; human gut
1056
982
-
Asn
GTT
[ENA]
¢þ
>WENV182840268
OKHL01000609
[OKHL] human gut metagenome; human gut
1211
1285
+
Arg
CCT
[ENA]
¢þ
>WENV182840271
OKHL01001044
[OKHL] human gut metagenome; human gut
1235
1159
-
Asp
GTC
[ENA]
¢þ
>WENV182840259
OKHL01000317
[OKHL] human gut metagenome; human gut
1603
1679
+
Arg
TCT
[ENA]
¢þ
>WENV182840260
OKHL01000385
[OKHL] human gut metagenome; human gut
1910
1835
-
Thr
GGT
[ENA]
¢þ
>WENV182840255
OKHL01000189
[OKHL] human gut metagenome; human gut
1999
2074
+
Gly
GCC
[ENA]
¢þ
>WENV182840252
OKHL01000033
[OKHL] human gut metagenome; human gut
2051
1964
-
Ser
TGA
[ENA]
¢þ
>WENV182840256
OKHL01000189
[OKHL] human gut metagenome; human gut
2143
2218
+
Gly
GCC
[ENA]
¢þ
>WENV182840257
OKHL01000189
[OKHL] human gut metagenome; human gut
2259
2332
+
Cys
GCA
[ENA]
¢þ
>WENV182840258
OKHL01000189
[OKHL] human gut metagenome; human gut
2346
2432
+
Leu
TAA
[ENA]
¢þ
>WENV182840254
OKHL01000167
[OKHL] human gut metagenome; human gut
2537
2461
-
Arg
ACG
[ENA]
¢þ
>WENV182840253
OKHL01000160
[OKHL] human gut metagenome; human gut
2567
2654
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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