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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKHS] human gut metagenome; human gut
HIT:
61 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182841208
OKHS01001040
[OKHS] human gut metagenome; human gut
62
136
+
Arg
CCT
[ENA]
¢þ
>WENV182841171
OKHS01000033
[OKHS] human gut metagenome; human gut
64
139
+
Trp
CCA
[ENA]
¢þ
>WENV182841218
OKHS01002253
[OKHS] human gut metagenome; human gut
98
174
+
Pro
TGG
[ENA]
¢þ
>WENV182841200
OKHS01000676
[OKHS] human gut metagenome; human gut
105
181
+
Pro
GGG
[ENA]
¢þ
>WENV182841220
OKHS01002356
[OKHS] human gut metagenome; human gut
173
99
-
Ile2
CAT
[ENA]
¢þ
>WENV182841227
OKHS01003390
[OKHS] human gut metagenome; human gut
203
275
+
Glu
TTC
[ENA]
¢þ
>WENV182841211
OKHS01001350
[OKHS] human gut metagenome; human gut
210
125
-
Ser
TGA
[ENA]
¢þ
>WENV182841229
OKHS01003879
[OKHS] human gut metagenome; human gut
320
393
+
Trp
CCA
[ENA]
¢þ
>WENV182841203
OKHS01000763
[OKHS] human gut metagenome; human gut
433
358
-
Thr
TGT
[ENA]
¢þ
>WENV182841225
OKHS01003156
[OKHS] human gut metagenome; human gut
436
363
-
Phe
GAA
[ENA]
¢þ
>WENV182841224
OKHS01003096
[OKHS] human gut metagenome; human gut
449
376
-
Lys
TTT
[ENA]
¢þ
>WENV182841226
OKHS01003295
[OKHS] human gut metagenome; human gut
457
530
+
Lys
CTT
[ENA]
¢þ
>WENV182841230
OKHS01003941
[OKHS] human gut metagenome; human gut
489
563
+
Arg
TCT
[ENA]
¢þ
>WENV182841199
OKHS01000545
[OKHS] human gut metagenome; human gut
504
431
-
Gly
GCC
[ENA]
¢þ
>WENV182841202
OKHS01000763
[OKHS] human gut metagenome; human gut
513
439
-
Asn
GTT
[ENA]
¢þ
>WENV182841228
OKHS01003783
[OKHS] human gut metagenome; human gut
517
593
+
Met
CAT
[ENA]
¢þ
>WENV182841222
OKHS01002524
[OKHS] human gut metagenome; human gut
541
615
+
Asn
GTT
[ENA]
¢þ
>WENV182841201
OKHS01000761
[OKHS] human gut metagenome; human gut
549
625
+
Arg
TCT
[ENA]
¢þ
>WENV182841221
OKHS01002370
[OKHS] human gut metagenome; human gut
575
662
+
Ser
GGA
[ENA]
¢þ
>WENV182841197
OKHS01000477
[OKHS] human gut metagenome; human gut
629
704
+
Lys
TTT
[ENA]
¢þ
>WENV182841204
OKHS01000933
[OKHS] human gut metagenome; human gut
637
713
+
Met
CAT
[ENA]
¢þ
>WENV182841210
OKHS01001166
[OKHS] human gut metagenome; human gut
660
743
+
Tyr
GTA
[ENA]
¢þ
>WENV182841223
OKHS01002655
[OKHS] human gut metagenome; human gut
671
597
-
His
GTG
[ENA]
¢þ
>WENV182841206
OKHS01000945
[OKHS] human gut metagenome; human gut
731
656
-
Phe
GAA
[ENA]
¢þ
>WENV182841205
OKHS01000933
[OKHS] human gut metagenome; human gut
762
836
+
Gln
CTG
[ENA]
¢þ
>WENV182841207
OKHS01000978
[OKHS] human gut metagenome; human gut
815
740
-
Val
TAC
[ENA]
¢þ
>WENV182841214
OKHS01001537
[OKHS] human gut metagenome; human gut
848
923
+
Thr
CGT
[ENA]
¢þ
>WENV182841217
OKHS01002118
[OKHS] human gut metagenome; human gut
861
786
-
Pro
TGG
[ENA]
¢þ
>WENV182841219
OKHS01002271
[OKHS] human gut metagenome; human gut
1026
954
-
Arg
CCT
[ENA]
¢þ
>WENV182841215
OKHS01001627
[OKHS] human gut metagenome; human gut
1052
1126
+
Thr
TGT
[ENA]
¢þ
>WENV182841216
OKHS01001663
[OKHS] human gut metagenome; human gut
1188
1272
+
Tyr
GTA
[ENA]
¢þ
>WENV182841212
OKHS01001479
[OKHS] human gut metagenome; human gut
1212
1288
+
Arg
CCG
[ENA]
¢þ
>WENV182841213
OKHS01001479
[OKHS] human gut metagenome; human gut
1347
1422
+
His
GTG
[ENA]
¢þ
>WENV182841187
OKHS01000440
[OKHS] human gut metagenome; human gut
1355
1430
+
Thr
TGT
[ENA]
¢þ
>WENV182841195
OKHS01000469
[OKHS] human gut metagenome; human gut
1433
1509
+
Ile
GAT
[ENA]
¢þ
>WENV182841188
OKHS01000440
[OKHS] human gut metagenome; human gut
1439
1523
+
Tyr
GTA
[ENA]
¢þ
>WENV182841209
OKHS01001047
[OKHS] human gut metagenome; human gut
1492
1408
-
Leu
CAA
[ENA]
¢þ
>WENV182841191
OKHS01000446
[OKHS] human gut metagenome; human gut
1535
1610
+
Asn
GTT
[ENA]
¢þ
>WENV182841196
OKHS01000469
[OKHS] human gut metagenome; human gut
1552
1627
+
Ala
TGC
[ENA]
¢þ
>WENV182841189
OKHS01000440
[OKHS] human gut metagenome; human gut
1640
1714
+
Gly
TCC
[ENA]
¢þ
>WENV182841176
OKHS01000104
[OKHS] human gut metagenome; human gut
1715
1629
-
Leu
CAG
[ENA]
¢þ
>WENV182841190
OKHS01000440
[OKHS] human gut metagenome; human gut
1721
1796
+
Thr
GGT
[ENA]
¢þ
>WENV182841186
OKHS01000367
[OKHS] human gut metagenome; human gut
2185
2111
-
Ala
TGC
[ENA]
¢þ
>WENV182841185
OKHS01000367
[OKHS] human gut metagenome; human gut
2290
2214
-
Ile
GAT
[ENA]
¢þ
>WENV182841180
OKHS01000288
[OKHS] human gut metagenome; human gut
2330
2255
-
Ile2
CAT
[ENA]
¢þ
>WENV182841184
OKHS01000320
[OKHS] human gut metagenome; human gut
2424
2499
+
Ala
GGC
[ENA]
¢þ
>WENV182841182
OKHS01000297
[OKHS] human gut metagenome; human gut
2472
2397
-
Asn
GTT
[ENA]
¢þ
>WENV182841194
OKHS01000468
[OKHS] human gut metagenome; human gut
2616
2530
-
Leu
TAA
[ENA]
¢þ
>WENV182841193
OKHS01000468
[OKHS] human gut metagenome; human gut
2702
2629
-
Cys
GCA
[ENA]
¢þ
>WENV182841192
OKHS01000468
[OKHS] human gut metagenome; human gut
2831
2756
-
Gly
GCC
[ENA]
¢þ
>WENV182841177
OKHS01000117
[OKHS] human gut metagenome; human gut
2860
2936
+
Pro
CGG
[ENA]
¢þ
>WENV182841181
OKHS01000297
[OKHS] human gut metagenome; human gut
3464
3553
+
Ser
CGA
[ENA]
¢þ
>WENV182841198
OKHS01000504
[OKHS] human gut metagenome; human gut
3479
3555
+
Asp
GTC
[ENA]
¢þ
>WENV182841183
OKHS01000318
[OKHS] human gut metagenome; human gut
3862
3786
-
Arg
TCT
[ENA]
¢þ
>WENV182841170
OKHS01000030
[OKHS] human gut metagenome; human gut
4005
4080
+
Phe
GAA
[ENA]
¢þ
>WENV182841179
OKHS01000174
[OKHS] human gut metagenome; human gut
5407
5493
+
Leu
GAG
[ENA]
¢þ
>WENV182841178
OKHS01000130
[OKHS] human gut metagenome; human gut
6805
6718
-
Ser
TGA
[ENA]
¢þ
>WENV182841173
OKHS01000048
[OKHS] human gut metagenome; human gut
6846
6922
+
Val
GAC
[ENA]
¢þ
>WENV182841174
OKHS01000048
[OKHS] human gut metagenome; human gut
6927
7003
+
Val
GAC
[ENA]
¢þ
>WENV182841172
OKHS01000044
[OKHS] human gut metagenome; human gut
8505
8432
-
Gly
CCC
[ENA]
¢þ
>WENV182841175
OKHS01000050
[OKHS] human gut metagenome; human gut
11076
11000
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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