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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKHW] human gut metagenome; human gut
HIT:
108 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182841585
OKHW01002089
[OKHW] human gut metagenome; human gut
32
107
+
Asp
GTC
[ENA]
¢þ
>WENV182841576
OKHW01001416
[OKHW] human gut metagenome; human gut
59
134
+
Asp
GTC
[ENA]
¢þ
>WENV182841545
OKHW01000130
[OKHW] human gut metagenome; human gut
63
138
+
Ala
TGC
[ENA]
¢þ
>WENV182841565
OKHW01000721
[OKHW] human gut metagenome; human gut
79
164
+
Leu
CAA
[ENA]
¢þ
>WENV182841534
OKHW01000045
[OKHW] human gut metagenome; human gut
89
164
+
Lys
TTT
[ENA]
¢þ
>WENV182841602
OKHW01003449
[OKHW] human gut metagenome; human gut
97
21
-
Asp
GTC
[ENA]
¢þ
>WENV182841593
OKHW01002555
[OKHW] human gut metagenome; human gut
127
40
-
Ser
CGA
[ENA]
¢þ
>WENV182841546
OKHW01000130
[OKHW] human gut metagenome; human gut
142
218
+
Ile
GAT
[ENA]
¢þ
>WENV182841532
OKHW01000036
[OKHW] human gut metagenome; human gut
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV182841586
OKHW01002089
[OKHW] human gut metagenome; human gut
153
225
+
Phe
GAA
[ENA]
¢þ
>WENV182841577
OKHW01001416
[OKHW] human gut metagenome; human gut
156
231
+
Phe
GAA
[ENA]
¢þ
>WENV182841594
OKHW01002936
[OKHW] human gut metagenome; human gut
201
125
-
Arg
CCT
[ENA]
¢þ
>WENV182841601
OKHW01003449
[OKHW] human gut metagenome; human gut
220
145
-
fMet
CAT
[ENA]
¢þ
>WENV182841587
OKHW01002089
[OKHW] human gut metagenome; human gut
230
312
+
Tyr
GTA
[ENA]
¢þ
>WENV182841578
OKHW01001416
[OKHW] human gut metagenome; human gut
239
313
+
Gly
GCC
[ENA]
¢þ
>WENV182841544
OKHW01000125
[OKHW] human gut metagenome; human gut
287
362
+
Thr
GGT
[ENA]
¢þ
>WENV182841588
OKHW01002089
[OKHW] human gut metagenome; human gut
316
389
+
Trp
CCA
[ENA]
¢þ
>WENV182841579
OKHW01001416
[OKHW] human gut metagenome; human gut
321
396
+
Asn
GTT
[ENA]
¢þ
>WENV182841600
OKHW01003449
[OKHW] human gut metagenome; human gut
342
253
-
Ser
TGA
[ENA]
¢þ
>WENV182841547
OKHW01000130
[OKHW] human gut metagenome; human gut
348
423
+
Ala
TGC
[ENA]
¢þ
>WENV182841567
OKHW01000976
[OKHW] human gut metagenome; human gut
359
431
+
Val
TAC
[ENA]
¢þ
>WENV182841592
OKHW01002410
[OKHW] human gut metagenome; human gut
403
317
-
Leu
CAA
[ENA]
¢þ
>WENV182841564
OKHW01000597
[OKHW] human gut metagenome; human gut
417
489
+
Thr
CGT
[ENA]
¢þ
>WENV182841589
OKHW01002089
[OKHW] human gut metagenome; human gut
426
499
+
His
GTG
[ENA]
¢þ
>WENV182841580
OKHW01001416
[OKHW] human gut metagenome; human gut
431
505
+
Gln
CTG
[ENA]
¢þ
>WENV182841568
OKHW01000976
[OKHW] human gut metagenome; human gut
434
506
+
Asp
GTC
[ENA]
¢þ
>WENV182841599
OKHW01003449
[OKHW] human gut metagenome; human gut
438
365
-
Glu
TTC
[ENA]
¢þ
>WENV182841590
OKHW01002089
[OKHW] human gut metagenome; human gut
512
585
+
Gln
TTG
[ENA]
¢þ
>WENV182841581
OKHW01001416
[OKHW] human gut metagenome; human gut
514
589
+
Lys
TTT
[ENA]
¢þ
>WENV182841598
OKHW01003449
[OKHW] human gut metagenome; human gut
520
445
-
Ile
GAT
[ENA]
¢þ
>WENV182841569
OKHW01000976
[OKHW] human gut metagenome; human gut
531
603
+
Lys
TTT
[ENA]
¢þ
>WENV182841591
OKHW01002089
[OKHW] human gut metagenome; human gut
595
678
+
Leu
CAA
[ENA]
¢þ
>WENV182841596
OKHW01003306
[OKHW] human gut metagenome; human gut
596
523
-
Arg
CCG
[ENA]
¢þ
>WENV182841570
OKHW01000976
[OKHW] human gut metagenome; human gut
608
691
+
Leu
TAG
[ENA]
¢þ
>WENV182841597
OKHW01003449
[OKHW] human gut metagenome; human gut
625
553
-
Gly
TCC
[ENA]
¢þ
>WENV182841582
OKHW01001416
[OKHW] human gut metagenome; human gut
677
752
+
Val
TAC
[ENA]
¢þ
>WENV182841595
OKHW01003076
[OKHW] human gut metagenome; human gut
699
624
-
Arg
CCT
[ENA]
¢þ
>WENV182841571
OKHW01000976
[OKHW] human gut metagenome; human gut
700
774
+
Thr
TGT
[ENA]
¢þ
>WENV182841554
OKHW01000304
[OKHW] human gut metagenome; human gut
727
815
+
Leu
TAA
[ENA]
¢þ
>WENV182841584
OKHW01001546
[OKHW] human gut metagenome; human gut
769
696
-
Gly
TCC
[ENA]
¢þ
>WENV182841572
OKHW01000976
[OKHW] human gut metagenome; human gut
807
878
+
Gly
GCC
[ENA]
¢þ
>WENV182841555
OKHW01000304
[OKHW] human gut metagenome; human gut
827
903
+
Ile2
CAT
[ENA]
¢þ
>WENV182841563
OKHW01000437
[OKHW] human gut metagenome; human gut
835
761
-
Gly
GCC
[ENA]
¢þ
>WENV182841583
OKHW01001546
[OKHW] human gut metagenome; human gut
855
779
-
Pro
TGG
[ENA]
¢þ
>WENV182841566
OKHW01000778
[OKHW] human gut metagenome; human gut
860
785
-
Asn
GTT
[ENA]
¢þ
>WENV182841573
OKHW01000976
[OKHW] human gut metagenome; human gut
887
971
+
Leu
TAA
[ENA]
¢þ
>WENV182841562
OKHW01000437
[OKHW] human gut metagenome; human gut
926
842
-
Leu
TAG
[ENA]
¢þ
>WENV182841574
OKHW01000976
[OKHW] human gut metagenome; human gut
983
1056
+
Arg
ACG
[ENA]
¢þ
>WENV182841561
OKHW01000437
[OKHW] human gut metagenome; human gut
1005
930
-
Lys
TTT
[ENA]
¢þ
>WENV182841575
OKHW01000976
[OKHW] human gut metagenome; human gut
1063
1138
+
Pro
TGG
[ENA]
¢þ
>WENV182841560
OKHW01000437
[OKHW] human gut metagenome; human gut
1092
1018
-
Gln
TTG
[ENA]
¢þ
>WENV182841559
OKHW01000437
[OKHW] human gut metagenome; human gut
1171
1096
-
His
GTG
[ENA]
¢þ
>WENV182841558
OKHW01000437
[OKHW] human gut metagenome; human gut
1253
1177
-
Arg
TCT
[ENA]
¢þ
>WENV182841557
OKHW01000437
[OKHW] human gut metagenome; human gut
1442
1369
-
Gly
TCC
[ENA]
¢þ
>WENV182841556
OKHW01000437
[OKHW] human gut metagenome; human gut
1543
1468
-
Pro
TGG
[ENA]
¢þ
>WENV182841548
OKHW01000136
[OKHW] human gut metagenome; human gut
2203
2277
+
Ala
TGC
[ENA]
¢þ
>WENV182841553
OKHW01000215
[OKHW] human gut metagenome; human gut
2220
2145
-
Glu
TTC
[ENA]
¢þ
>WENV182841535
OKHW01000046
[OKHW] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182841536
OKHW01000046
[OKHW] human gut metagenome; human gut
2869
2944
+
Ala
GGC
[ENA]
¢þ
>WENV182841549
OKHW01000140
[OKHW] human gut metagenome; human gut
3510
3585
+
Thr
TGT
[ENA]
¢þ
>WENV182841550
OKHW01000140
[OKHW] human gut metagenome; human gut
3594
3678
+
Tyr
GTA
[ENA]
¢þ
>WENV182841543
OKHW01000102
[OKHW] human gut metagenome; human gut
3685
3761
+
Pro
GGG
[ENA]
¢þ
>WENV182841551
OKHW01000140
[OKHW] human gut metagenome; human gut
3795
3869
+
Gly
TCC
[ENA]
¢þ
>WENV182841552
OKHW01000140
[OKHW] human gut metagenome; human gut
3876
3951
+
Thr
GGT
[ENA]
¢þ
>WENV182841540
OKHW01000064
[OKHW] human gut metagenome; human gut
5685
5611
-
Arg
CCT
[ENA]
¢þ
>WENV182841542
OKHW01000084
[OKHW] human gut metagenome; human gut
6694
6610
-
Leu
CAA
[ENA]
¢þ
>WENV182841539
OKHW01000056
[OKHW] human gut metagenome; human gut
8203
8279
+
Asp
GTC
[ENA]
¢þ
>WENV182841526
OKHW01000017
[OKHW] human gut metagenome; human gut
9941
10014
+
Gly
CCC
[ENA]
¢þ
>WENV182841541
OKHW01000080
[OKHW] human gut metagenome; human gut
12646
12721
+
Phe
GAA
[ENA]
¢þ
>WENV182841533
OKHW01000040
[OKHW] human gut metagenome; human gut
13873
13798
-
Thr
CGT
[ENA]
¢þ
>WENV182841525
OKHW01000014
[OKHW] human gut metagenome; human gut
17414
17339
-
Ile2
CAT
[ENA]
¢þ
>WENV182841531
OKHW01000030
[OKHW] human gut metagenome; human gut
22487
22412
-
Phe
GAA
[ENA]
¢þ
>WENV182841537
OKHW01000053
[OKHW] human gut metagenome; human gut
23208
23294
+
Leu
CAG
[ENA]
¢þ
>WENV182841538
OKHW01000053
[OKHW] human gut metagenome; human gut
23329
23415
+
Leu
CAG
[ENA]
¢þ
>WENV182841498
OKHW01000002
[OKHW] human gut metagenome; human gut
27873
27797
-
Pro
CGG
[ENA]
¢þ
>WENV182841517
OKHW01000007
[OKHW] human gut metagenome; human gut
28533
28609
+
Val
GAC
[ENA]
¢þ
>WENV182841518
OKHW01000007
[OKHW] human gut metagenome; human gut
28614
28690
+
Val
GAC
[ENA]
¢þ
>WENV182841514
OKHW01000005
[OKHW] human gut metagenome; human gut
28939
28853
-
Leu
TAA
[ENA]
¢þ
>WENV182841513
OKHW01000005
[OKHW] human gut metagenome; human gut
29025
28952
-
Cys
GCA
[ENA]
¢þ
>WENV182841512
OKHW01000005
[OKHW] human gut metagenome; human gut
29154
29079
-
Gly
GCC
[ENA]
¢þ
>WENV182841519
OKHW01000011
[OKHW] human gut metagenome; human gut
35497
35584
+
Ser
TGA
[ENA]
¢þ
>WENV182841527
OKHW01000019
[OKHW] human gut metagenome; human gut
47342
47429
+
Ser
GGA
[ENA]
¢þ
>WENV182841530
OKHW01000025
[OKHW] human gut metagenome; human gut
51726
51639
-
Ser
GGA
[ENA]
¢þ
>WENV182841529
OKHW01000023
[OKHW] human gut metagenome; human gut
55714
55638
-
Arg
ACG
[ENA]
¢þ
>WENV182841528
OKHW01000023
[OKHW] human gut metagenome; human gut
55853
55777
-
Arg
ACG
[ENA]
¢þ
>WENV182841500
OKHW01000004
[OKHW] human gut metagenome; human gut
72530
72606
+
Met
CAT
[ENA]
¢þ
>WENV182841501
OKHW01000004
[OKHW] human gut metagenome; human gut
72615
72699
+
Leu
TAG
[ENA]
¢þ
>WENV182841502
OKHW01000004
[OKHW] human gut metagenome; human gut
72723
72797
+
Gln
TTG
[ENA]
¢þ
>WENV182841503
OKHW01000004
[OKHW] human gut metagenome; human gut
72832
72906
+
Gln
TTG
[ENA]
¢þ
>WENV182841504
OKHW01000004
[OKHW] human gut metagenome; human gut
72922
72998
+
Met
CAT
[ENA]
¢þ
>WENV182841505
OKHW01000004
[OKHW] human gut metagenome; human gut
73047
73121
+
Gln
CTG
[ENA]
¢þ
>WENV182841506
OKHW01000004
[OKHW] human gut metagenome; human gut
73159
73233
+
Gln
CTG
[ENA]
¢þ
>WENV182841524
OKHW01000012
[OKHW] human gut metagenome; human gut
76548
76472
-
Pro
TGG
[ENA]
¢þ
>WENV182841523
OKHW01000012
[OKHW] human gut metagenome; human gut
76677
76591
-
Leu
CAG
[ENA]
¢þ
>WENV182841522
OKHW01000012
[OKHW] human gut metagenome; human gut
76773
76698
-
His
GTG
[ENA]
¢þ
>WENV182841521
OKHW01000012
[OKHW] human gut metagenome; human gut
76908
76832
-
Arg
CCG
[ENA]
¢þ
>WENV182841496
OKHW01000001
[OKHW] human gut metagenome; human gut
80422
80338
-
Tyr
GTA
[ENA]
¢þ
>WENV182841495
OKHW01000001
[OKHW] human gut metagenome; human gut
80540
80456
-
Tyr
GTA
[ENA]
¢þ
>WENV182841515
OKHW01000006
[OKHW] human gut metagenome; human gut
100599
100685
+
Leu
GAG
[ENA]
¢þ
>WENV182841511
OKHW01000005
[OKHW] human gut metagenome; human gut
104460
104371
-
Ser
CGA
[ENA]
¢þ
>WENV182841516
OKHW01000006
[OKHW] human gut metagenome; human gut
104465
104541
+
fMet
CAT
[ENA]
¢þ
>WENV182841507
OKHW01000005
[OKHW] human gut metagenome; human gut
105452
105527
+
Asn
GTT
[ENA]
¢þ
>WENV182841520
OKHW01000012
[OKHW] human gut metagenome; human gut
111452
111377
-
Trp
CCA
[ENA]
¢þ
>WENV182841510
OKHW01000005
[OKHW] human gut metagenome; human gut
145418
145343
-
Asn
GTT
[ENA]
¢þ
>WENV182841509
OKHW01000005
[OKHW] human gut metagenome; human gut
147827
147752
-
Asn
GTT
[ENA]
¢þ
>WENV182841508
OKHW01000005
[OKHW] human gut metagenome; human gut
149576
149651
+
Asn
GTT
[ENA]
¢þ
>WENV182841497
OKHW01000002
[OKHW] human gut metagenome; human gut
152738
152832
+
SeC
TCA
[ENA]
¢þ
>WENV182841499
OKHW01000003
[OKHW] human gut metagenome; human gut
162879
162955
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK