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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKIA] human gut metagenome; human gut
HIT:
62 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182841944
OKIA01000020
[OKIA] human gut metagenome; human gut
87
173
+
Leu
CAG
[ENA]
¢þ
>WENV182841965
OKIA01000042
[OKIA] human gut metagenome; human gut
95
170
+
Ala
GGC
[ENA]
¢þ
>WENV182841947
OKIA01000025
[OKIA] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182841941
OKIA01000011
[OKIA] human gut metagenome; human gut
114
38
-
Pro
CGG
[ENA]
¢þ
>WENV182841957
OKIA01000029
[OKIA] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182841963
OKIA01000034
[OKIA] human gut metagenome; human gut
166
92
-
Gln
TTG
[ENA]
¢þ
>WENV182841962
OKIA01000034
[OKIA] human gut metagenome; human gut
274
190
-
Leu
TAG
[ENA]
¢þ
>WENV182841961
OKIA01000034
[OKIA] human gut metagenome; human gut
359
283
-
Met
CAT
[ENA]
¢þ
>WENV182841974
OKIA01000051
[OKIA] human gut metagenome; human gut
423
350
-
Pro
TGG
[ENA]
¢þ
>WENV182841973
OKIA01000051
[OKIA] human gut metagenome; human gut
586
513
-
Arg
ACG
[ENA]
¢þ
>WENV182841972
OKIA01000051
[OKIA] human gut metagenome; human gut
686
601
-
Leu
TAA
[ENA]
¢þ
>WENV182841971
OKIA01000051
[OKIA] human gut metagenome; human gut
773
702
-
Gly
GCC
[ENA]
¢þ
>WENV182841970
OKIA01000051
[OKIA] human gut metagenome; human gut
853
778
-
Thr
TGT
[ENA]
¢þ
>WENV182841969
OKIA01000051
[OKIA] human gut metagenome; human gut
942
859
-
Leu
TAG
[ENA]
¢þ
>WENV182841968
OKIA01000051
[OKIA] human gut metagenome; human gut
1031
957
-
Lys
TTT
[ENA]
¢þ
>WENV182841967
OKIA01000051
[OKIA] human gut metagenome; human gut
1110
1036
-
Val
TAC
[ENA]
¢þ
>WENV182841978
OKIA01000084
[OKIA] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182841975
OKIA01000057
[OKIA] human gut metagenome; human gut
3627
3702
+
Thr
TGT
[ENA]
¢þ
>WENV182841976
OKIA01000057
[OKIA] human gut metagenome; human gut
3713
3797
+
Tyr
GTA
[ENA]
¢þ
>WENV182841977
OKIA01000057
[OKIA] human gut metagenome; human gut
3913
3987
+
Gly
TCC
[ENA]
¢þ
>WENV182841966
OKIA01000051
[OKIA] human gut metagenome; human gut
4497
4425
-
Ala
TGC
[ENA]
¢þ
>WENV182841955
OKIA01000027
[OKIA] human gut metagenome; human gut
9426
9502
+
Asp
GTC
[ENA]
¢þ
>WENV182841964
OKIA01000035
[OKIA] human gut metagenome; human gut
13254
13181
-
Gly
CCC
[ENA]
¢þ
>WENV182841938
OKIA01000009
[OKIA] human gut metagenome; human gut
31013
31088
+
Phe
GAA
[ENA]
¢þ
>WENV182841946
OKIA01000024
[OKIA] human gut metagenome; human gut
32750
32674
-
fMet
CAT
[ENA]
¢þ
>WENV182841945
OKIA01000024
[OKIA] human gut metagenome; human gut
36767
36681
-
Leu
GAG
[ENA]
¢þ
>WENV182841933
OKIA01000006
[OKIA] human gut metagenome; human gut
37944
38020
+
Pro
GGG
[ENA]
¢þ
>WENV182841948
OKIA01000025
[OKIA] human gut metagenome; human gut
38213
38289
+
Arg
CCG
[ENA]
¢þ
>WENV182841949
OKIA01000025
[OKIA] human gut metagenome; human gut
38345
38420
+
His
GTG
[ENA]
¢þ
>WENV182841950
OKIA01000025
[OKIA] human gut metagenome; human gut
38444
38530
+
Leu
CAG
[ENA]
¢þ
>WENV182841951
OKIA01000025
[OKIA] human gut metagenome; human gut
38573
38649
+
Pro
TGG
[ENA]
¢þ
>WENV182841942
OKIA01000014
[OKIA] human gut metagenome; human gut
39104
39020
-
Leu
CAA
[ENA]
¢þ
>WENV182841930
OKIA01000003
[OKIA] human gut metagenome; human gut
45096
45020
-
Arg
TCT
[ENA]
¢þ
>WENV182841954
OKIA01000026
[OKIA] human gut metagenome; human gut
53679
53604
-
Gly
GCC
[ENA]
¢þ
>WENV182841953
OKIA01000026
[OKIA] human gut metagenome; human gut
53823
53748
-
Gly
GCC
[ENA]
¢þ
>WENV182841952
OKIA01000026
[OKIA] human gut metagenome; human gut
53967
53892
-
Gly
GCC
[ENA]
¢þ
>WENV182841960
OKIA01000031
[OKIA] human gut metagenome; human gut
63192
63278
+
Leu
CAG
[ENA]
¢þ
>WENV182841935
OKIA01000008
[OKIA] human gut metagenome; human gut
64425
64501
+
fMet
CAT
[ENA]
¢þ
>WENV182841936
OKIA01000008
[OKIA] human gut metagenome; human gut
64535
64611
+
fMet
CAT
[ENA]
¢þ
>WENV182841937
OKIA01000008
[OKIA] human gut metagenome; human gut
64645
64721
+
fMet
CAT
[ENA]
¢þ
>WENV182841959
OKIA01000030
[OKIA] human gut metagenome; human gut
70053
69979
-
Gln
CTG
[ENA]
¢þ
>WENV182841958
OKIA01000030
[OKIA] human gut metagenome; human gut
70203
70129
-
Gln
CTG
[ENA]
¢þ
>WENV182841956
OKIA01000027
[OKIA] human gut metagenome; human gut
76236
76161
-
Thr
CGT
[ENA]
¢þ
>WENV182841931
OKIA01000004
[OKIA] human gut metagenome; human gut
84123
84210
+
Ser
TGA
[ENA]
¢þ
>WENV182841939
OKIA01000009
[OKIA] human gut metagenome; human gut
100664
100739
+
Ile2
CAT
[ENA]
¢þ
>WENV182841943
OKIA01000015
[OKIA] human gut metagenome; human gut
119839
119763
-
Arg
ACG
[ENA]
¢þ
>WENV182841917
OKIA01000001
[OKIA] human gut metagenome; human gut
125376
125452
+
Val
GAC
[ENA]
¢þ
>WENV182841918
OKIA01000001
[OKIA] human gut metagenome; human gut
125457
125533
+
Val
GAC
[ENA]
¢þ
>WENV182841940
OKIA01000011
[OKIA] human gut metagenome; human gut
129502
129596
+
SeC
TCA
[ENA]
¢þ
>WENV182841932
OKIA01000004
[OKIA] human gut metagenome; human gut
131899
131812
-
Ser
GGA
[ENA]
¢þ
>WENV182841934
OKIA01000006
[OKIA] human gut metagenome; human gut
154815
154889
+
Arg
CCT
[ENA]
¢þ
>WENV182841919
OKIA01000001
[OKIA] human gut metagenome; human gut
321686
321770
+
Tyr
GTA
[ENA]
¢þ
>WENV182841920
OKIA01000001
[OKIA] human gut metagenome; human gut
321986
322070
+
Tyr
GTA
[ENA]
¢þ
>WENV182841929
OKIA01000001
[OKIA] human gut metagenome; human gut
545316
545230
-
Leu
TAA
[ENA]
¢þ
>WENV182841928
OKIA01000001
[OKIA] human gut metagenome; human gut
545403
545330
-
Cys
GCA
[ENA]
¢þ
>WENV182841927
OKIA01000001
[OKIA] human gut metagenome; human gut
545519
545444
-
Gly
GCC
[ENA]
¢þ
>WENV182841926
OKIA01000001
[OKIA] human gut metagenome; human gut
594057
593982
-
Thr
TGT
[ENA]
¢þ
>WENV182841925
OKIA01000001
[OKIA] human gut metagenome; human gut
606084
605995
-
Ser
CGA
[ENA]
¢þ
>WENV182841921
OKIA01000001
[OKIA] human gut metagenome; human gut
607076
607151
+
Asn
GTT
[ENA]
¢þ
>WENV182841922
OKIA01000001
[OKIA] human gut metagenome; human gut
612317
612392
+
Asn
GTT
[ENA]
¢þ
>WENV182841924
OKIA01000001
[OKIA] human gut metagenome; human gut
621314
621239
-
Asn
GTT
[ENA]
¢þ
>WENV182841923
OKIA01000001
[OKIA] human gut metagenome; human gut
623072
623147
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK