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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKIB] human gut metagenome; human gut
HIT:
142 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182841992
OKIB01000024
[OKIB] human gut metagenome; human gut
18
94
+
fMet
CAT
[ENA]
¢þ
>WENV182842115
OKIB01001579
[OKIB] human gut metagenome; human gut
60
134
+
Gly
GCC
[ENA]
¢þ
>WENV182842043
OKIB01000206
[OKIB] human gut metagenome; human gut
78
2
-
Met
CAT
[ENA]
¢þ
>WENV182842069
OKIB01000305
[OKIB] human gut metagenome; human gut
102
177
+
Trp
CCA
[ENA]
¢þ
>WENV182842005
OKIB01000047
[OKIB] human gut metagenome; human gut
103
176
+
Cys
GCA
[ENA]
¢þ
>WENV182842116
OKIB01001579
[OKIB] human gut metagenome; human gut
144
218
+
Cys
GCA
[ENA]
¢þ
>WENV182842095
OKIB01000587
[OKIB] human gut metagenome; human gut
149
77
-
Ala
TGC
[ENA]
¢þ
>WENV182841986
OKIB01000017
[OKIB] human gut metagenome; human gut
151
59
-
Ser
GCT
[ENA]
¢þ
>WENV182842042
OKIB01000206
[OKIB] human gut metagenome; human gut
168
94
-
Gln
TTG
[ENA]
¢þ
>WENV182842006
OKIB01000047
[OKIB] human gut metagenome; human gut
190
276
+
Leu
TAA
[ENA]
¢þ
>WENV182842078
OKIB01000396
[OKIB] human gut metagenome; human gut
204
121
-
Leu
CAA
[ENA]
¢þ
>WENV182842117
OKIB01001579
[OKIB] human gut metagenome; human gut
233
321
+
Leu
TAA
[ENA]
¢þ
>WENV182842094
OKIB01000587
[OKIB] human gut metagenome; human gut
242
169
-
Pro
TGG
[ENA]
¢þ
>WENV182842041
OKIB01000206
[OKIB] human gut metagenome; human gut
276
192
-
Leu
TAG
[ENA]
¢þ
>WENV182842093
OKIB01000587
[OKIB] human gut metagenome; human gut
326
251
-
Arg
ACG
[ENA]
¢þ
>WENV182842109
OKIB01000912
[OKIB] human gut metagenome; human gut
331
255
-
Arg
TCT
[ENA]
¢þ
>WENV182842057
OKIB01000265
[OKIB] human gut metagenome; human gut
352
277
-
Lys
TTT
[ENA]
¢þ
>WENV182842040
OKIB01000206
[OKIB] human gut metagenome; human gut
361
285
-
Met
CAT
[ENA]
¢þ
>WENV182842092
OKIB01000587
[OKIB] human gut metagenome; human gut
421
336
-
Leu
TAA
[ENA]
¢þ
>WENV182842108
OKIB01000912
[OKIB] human gut metagenome; human gut
421
345
-
Arg
TCG
[ENA]
¢þ
>WENV182842056
OKIB01000265
[OKIB] human gut metagenome; human gut
431
357
-
Gln
TTG
[ENA]
¢þ
>WENV182842120
OKIB01001879
[OKIB] human gut metagenome; human gut
495
420
-
Ala
TGC
[ENA]
¢þ
>WENV182842107
OKIB01000912
[OKIB] human gut metagenome; human gut
504
429
-
Ile2
CAT
[ENA]
¢þ
>WENV182842091
OKIB01000587
[OKIB] human gut metagenome; human gut
509
438
-
Gly
GCC
[ENA]
¢þ
>WENV182842055
OKIB01000265
[OKIB] human gut metagenome; human gut
531
456
-
His
GTG
[ENA]
¢þ
>WENV182842114
OKIB01001561
[OKIB] human gut metagenome; human gut
558
630
+
Lys
CTT
[ENA]
¢þ
>WENV182842119
OKIB01001879
[OKIB] human gut metagenome; human gut
582
506
-
Ile
GAT
[ENA]
¢þ
>WENV182842118
OKIB01001636
[OKIB] human gut metagenome; human gut
590
665
+
Glu
TTC
[ENA]
¢þ
>WENV182842090
OKIB01000587
[OKIB] human gut metagenome; human gut
594
519
-
Thr
TGT
[ENA]
¢þ
>WENV182842089
OKIB01000587
[OKIB] human gut metagenome; human gut
693
610
-
Leu
TAG
[ENA]
¢þ
>WENV182842028
OKIB01000124
[OKIB] human gut metagenome; human gut
840
765
-
Thr
CGT
[ENA]
¢þ
>WENV182842111
OKIB01001171
[OKIB] human gut metagenome; human gut
843
918
+
Asp
GTC
[ENA]
¢þ
>WENV182842088
OKIB01000587
[OKIB] human gut metagenome; human gut
849
775
-
Val
TAC
[ENA]
¢þ
>WENV182842023
OKIB01000109
[OKIB] human gut metagenome; human gut
859
783
-
Pro
GGG
[ENA]
¢þ
>WENV182842087
OKIB01000587
[OKIB] human gut metagenome; human gut
936
863
-
Glu
TTC
[ENA]
¢þ
>WENV182842112
OKIB01001171
[OKIB] human gut metagenome; human gut
940
1015
+
Phe
GAA
[ENA]
¢þ
>WENV182842034
OKIB01000158
[OKIB] human gut metagenome; human gut
947
858
-
Ser
CGA
[ENA]
¢þ
>WENV182842113
OKIB01001171
[OKIB] human gut metagenome; human gut
1028
1113
+
Leu
GAG
[ENA]
¢þ
>WENV182842086
OKIB01000587
[OKIB] human gut metagenome; human gut
1040
949
-
Ser
GGA
[ENA]
¢þ
>WENV182842110
OKIB01001061
[OKIB] human gut metagenome; human gut
1115
1042
-
Gly
CCC
[ENA]
¢þ
>WENV182842085
OKIB01000587
[OKIB] human gut metagenome; human gut
1153
1078
-
Asn
GTT
[ENA]
¢þ
>WENV182842058
OKIB01000279
[OKIB] human gut metagenome; human gut
1565
1489
-
Arg
TCT
[ENA]
¢þ
>WENV182842031
OKIB01000139
[OKIB] human gut metagenome; human gut
1712
1637
-
Phe
GAA
[ENA]
¢þ
>WENV182842104
OKIB01000753
[OKIB] human gut metagenome; human gut
1799
1875
+
Pro
TGG
[ENA]
¢þ
>WENV182842105
OKIB01000753
[OKIB] human gut metagenome; human gut
1886
1959
+
Gly
TCC
[ENA]
¢þ
>WENV182842033
OKIB01000158
[OKIB] human gut metagenome; human gut
1938
2013
+
Asn
GTT
[ENA]
¢þ
>WENV182842059
OKIB01000283
[OKIB] human gut metagenome; human gut
2022
1947
-
Ile2
CAT
[ENA]
¢þ
>WENV182842106
OKIB01000753
[OKIB] human gut metagenome; human gut
2065
2141
+
Arg
TCT
[ENA]
¢þ
>WENV182842103
OKIB01000721
[OKIB] human gut metagenome; human gut
2904
2818
-
Leu
CAG
[ENA]
¢þ
>WENV182842012
OKIB01000061
[OKIB] human gut metagenome; human gut
2936
2861
-
Thr
CGT
[ENA]
¢þ
>WENV182842102
OKIB01000721
[OKIB] human gut metagenome; human gut
3022
2936
-
Leu
CAG
[ENA]
¢þ
>WENV182842067
OKIB01000290
[OKIB] human gut metagenome; human gut
3132
3057
-
Val
TAC
[ENA]
¢þ
>WENV182842101
OKIB01000721
[OKIB] human gut metagenome; human gut
3137
3051
-
Leu
CAG
[ENA]
¢þ
>WENV182842066
OKIB01000290
[OKIB] human gut metagenome; human gut
3212
3138
-
Glu
TTC
[ENA]
¢þ
>WENV182842071
OKIB01000323
[OKIB] human gut metagenome; human gut
3290
3206
-
Leu
CAA
[ENA]
¢þ
>WENV182842065
OKIB01000290
[OKIB] human gut metagenome; human gut
3296
3221
-
Asn
GTT
[ENA]
¢þ
>WENV182842096
OKIB01000673
[OKIB] human gut metagenome; human gut
3603
3678
+
Thr
TGT
[ENA]
¢þ
>WENV182842083
OKIB01000522
[OKIB] human gut metagenome; human gut
3613
3699
+
Leu
GAG
[ENA]
¢þ
>WENV182842097
OKIB01000673
[OKIB] human gut metagenome; human gut
3689
3773
+
Tyr
GTA
[ENA]
¢þ
>WENV182842098
OKIB01000673
[OKIB] human gut metagenome; human gut
3893
3967
+
Gly
TCC
[ENA]
¢þ
>WENV182842099
OKIB01000673
[OKIB] human gut metagenome; human gut
3973
4048
+
Thr
GGT
[ENA]
¢þ
>WENV182842053
OKIB01000261
[OKIB] human gut metagenome; human gut
4092
4002
-
Ser
CGA
[ENA]
¢þ
>WENV182842100
OKIB01000684
[OKIB] human gut metagenome; human gut
4389
4295
-
SeC
TCA
[ENA]
¢þ
>WENV182842052
OKIB01000257
[OKIB] human gut metagenome; human gut
4400
4316
-
Leu
CAA
[ENA]
¢þ
>WENV182842046
OKIB01000229
[OKIB] human gut metagenome; human gut
4452
4542
+
Ser
GCT
[ENA]
¢þ
>WENV182842082
OKIB01000520
[OKIB] human gut metagenome; human gut
5421
5507
+
Leu
GAG
[ENA]
¢þ
>WENV182842084
OKIB01000522
[OKIB] human gut metagenome; human gut
5505
5581
+
fMet
CAT
[ENA]
¢þ
>WENV182841991
OKIB01000021
[OKIB] human gut metagenome; human gut
5863
5788
-
Asn
GTT
[ENA]
¢þ
>WENV182841983
OKIB01000007
[OKIB] human gut metagenome; human gut
5999
5926
-
Gly
CCC
[ENA]
¢þ
>WENV182842081
OKIB01000513
[OKIB] human gut metagenome; human gut
7161
7247
+
Leu
GAG
[ENA]
¢þ
>WENV182841994
OKIB01000027
[OKIB] human gut metagenome; human gut
7499
7574
+
Phe
GAA
[ENA]
¢þ
>WENV182842045
OKIB01000221
[OKIB] human gut metagenome; human gut
7925
7998
+
Arg
CCT
[ENA]
¢þ
>WENV182842002
OKIB01000041
[OKIB] human gut metagenome; human gut
8204
8130
-
Ile2
CAT
[ENA]
¢þ
>WENV182842051
OKIB01000254
[OKIB] human gut metagenome; human gut
8309
8384
+
Phe
GAA
[ENA]
¢þ
>WENV182842070
OKIB01000308
[OKIB] human gut metagenome; human gut
8615
8691
+
Arg
CCT
[ENA]
¢þ
>WENV182842079
OKIB01000459
[OKIB] human gut metagenome; human gut
9413
9489
+
Asp
GTC
[ENA]
¢þ
>WENV182842022
OKIB01000093
[OKIB] human gut metagenome; human gut
9900
9976
+
Asp
GTC
[ENA]
¢þ
>WENV182842080
OKIB01000483
[OKIB] human gut metagenome; human gut
10187
10113
-
Gln
CTG
[ENA]
¢þ
>WENV182842018
OKIB01000089
[OKIB] human gut metagenome; human gut
10448
10361
-
Ser
GGA
[ENA]
¢þ
>WENV182842072
OKIB01000341
[OKIB] human gut metagenome; human gut
12869
12944
+
Ile2
CAT
[ENA]
¢þ
>WENV182842077
OKIB01000358
[OKIB] human gut metagenome; human gut
13820
13726
-
SeC
TCA
[ENA]
¢þ
>WENV182842073
OKIB01000354
[OKIB] human gut metagenome; human gut
13992
14068
+
Arg
CCG
[ENA]
¢þ
>WENV182842074
OKIB01000354
[OKIB] human gut metagenome; human gut
14124
14199
+
His
GTG
[ENA]
¢þ
>WENV182842075
OKIB01000354
[OKIB] human gut metagenome; human gut
14220
14305
+
Leu
CAG
[ENA]
¢þ
>WENV182842076
OKIB01000354
[OKIB] human gut metagenome; human gut
14347
14423
+
Pro
TGG
[ENA]
¢þ
>WENV182842017
OKIB01000076
[OKIB] human gut metagenome; human gut
15900
15825
-
Asn
GTT
[ENA]
¢þ
>WENV182842068
OKIB01000302
[OKIB] human gut metagenome; human gut
16328
16244
-
Leu
CAA
[ENA]
¢þ
>WENV182841980
OKIB01000005
[OKIB] human gut metagenome; human gut
16981
17068
+
Ser
GGA
[ENA]
¢þ
>WENV182842049
OKIB01000231
[OKIB] human gut metagenome; human gut
17182
17098
-
Leu
TAG
[ENA]
¢þ
>WENV182842029
OKIB01000129
[OKIB] human gut metagenome; human gut
17920
17845
-
Phe
GAA
[ENA]
¢þ
>WENV182842016
OKIB01000076
[OKIB] human gut metagenome; human gut
18412
18337
-
Asn
GTT
[ENA]
¢þ
>WENV182842026
OKIB01000119
[OKIB] human gut metagenome; human gut
18810
18886
+
Pro
CGG
[ENA]
¢þ
>WENV182842014
OKIB01000068
[OKIB] human gut metagenome; human gut
18980
19067
+
Ser
TGA
[ENA]
¢þ
>WENV182842054
OKIB01000262
[OKIB] human gut metagenome; human gut
19498
19404
-
SeC
TCA
[ENA]
¢þ
>WENV182841998
OKIB01000031
[OKIB] human gut metagenome; human gut
20000
19926
-
Asn
GTT
[ENA]
¢þ
>WENV182842044
OKIB01000212
[OKIB] human gut metagenome; human gut
20113
20023
-
Ser
GGA
[ENA]
¢þ
>WENV182842015
OKIB01000076
[OKIB] human gut metagenome; human gut
20160
20235
+
Asn
GTT
[ENA]
¢þ
>WENV182842060
OKIB01000290
[OKIB] human gut metagenome; human gut
20520
20595
+
Thr
TGT
[ENA]
¢þ
>WENV182842061
OKIB01000290
[OKIB] human gut metagenome; human gut
20606
20690
+
Tyr
GTA
[ENA]
¢þ
>WENV182842062
OKIB01000290
[OKIB] human gut metagenome; human gut
20696
20771
+
fMet
CAT
[ENA]
¢þ
>WENV182842063
OKIB01000290
[OKIB] human gut metagenome; human gut
20803
20878
+
Thr
GGT
[ENA]
¢þ
>WENV182842064
OKIB01000290
[OKIB] human gut metagenome; human gut
20884
20960
+
Met
CAT
[ENA]
¢þ
>WENV182842011
OKIB01000059
[OKIB] human gut metagenome; human gut
21037
20961
-
Pro
TGG
[ENA]
¢þ
>WENV182842010
OKIB01000059
[OKIB] human gut metagenome; human gut
21166
21080
-
Leu
CAG
[ENA]
¢þ
>WENV182842009
OKIB01000059
[OKIB] human gut metagenome; human gut
21262
21187
-
His
GTG
[ENA]
¢þ
>WENV182842008
OKIB01000059
[OKIB] human gut metagenome; human gut
21394
21318
-
Arg
CCG
[ENA]
¢þ
>WENV182842050
OKIB01000246
[OKIB] human gut metagenome; human gut
21667
21755
+
Ser
TGA
[ENA]
¢þ
>WENV182842036
OKIB01000179
[OKIB] human gut metagenome; human gut
22708
22632
-
Asp
GTC
[ENA]
¢þ
>WENV182842030
OKIB01000130
[OKIB] human gut metagenome; human gut
22842
22916
+
Arg
CCG
[ENA]
¢þ
>WENV182842038
OKIB01000199
[OKIB] human gut metagenome; human gut
23950
23875
-
Thr
CGT
[ENA]
¢þ
>WENV182841999
OKIB01000036
[OKIB] human gut metagenome; human gut
25469
25393
-
Pro
GGG
[ENA]
¢þ
>WENV182842048
OKIB01000231
[OKIB] human gut metagenome; human gut
25500
25424
-
Arg
ACG
[ENA]
¢þ
>WENV182842035
OKIB01000160
[OKIB] human gut metagenome; human gut
25638
25551
-
Ser
GGA
[ENA]
¢þ
>WENV182842047
OKIB01000231
[OKIB] human gut metagenome; human gut
25688
25613
-
Trp
CCA
[ENA]
¢þ
>WENV182842032
OKIB01000144
[OKIB] human gut metagenome; human gut
26012
25937
-
Lys
CTT
[ENA]
¢þ
>WENV182842039
OKIB01000202
[OKIB] human gut metagenome; human gut
28885
28960
+
Gly
GCC
[ENA]
¢þ
>WENV182841990
OKIB01000021
[OKIB] human gut metagenome; human gut
29783
29708
-
Asn
GTT
[ENA]
¢þ
>WENV182842037
OKIB01000191
[OKIB] human gut metagenome; human gut
30095
30021
-
Gln
CTG
[ENA]
¢þ
>WENV182842000
OKIB01000037
[OKIB] human gut metagenome; human gut
30637
30712
+
Ile2
CAT
[ENA]
¢þ
>WENV182842004
OKIB01000046
[OKIB] human gut metagenome; human gut
30862
30787
-
Asn
GTT
[ENA]
¢þ
>WENV182842025
OKIB01000111
[OKIB] human gut metagenome; human gut
30878
30803
-
Thr
TGT
[ENA]
¢þ
>WENV182842024
OKIB01000111
[OKIB] human gut metagenome; human gut
30958
30884
-
Asn
GTT
[ENA]
¢þ
>WENV182841987
OKIB01000021
[OKIB] human gut metagenome; human gut
31559
31634
+
Asn
GTT
[ENA]
¢þ
>WENV182842003
OKIB01000046
[OKIB] human gut metagenome; human gut
31854
31943
+
Ser
CGA
[ENA]
¢þ
>WENV182842027
OKIB01000123
[OKIB] human gut metagenome; human gut
32056
31969
-
Ser
TGA
[ENA]
¢þ
>WENV182842020
OKIB01000091
[OKIB] human gut metagenome; human gut
42376
42301
-
Asn
GTT
[ENA]
¢þ
>WENV182842021
OKIB01000092
[OKIB] human gut metagenome; human gut
43416
43342
-
Arg
CCT
[ENA]
¢þ
>WENV182842019
OKIB01000091
[OKIB] human gut metagenome; human gut
44784
44709
-
Asn
GTT
[ENA]
¢þ
>WENV182841989
OKIB01000021
[OKIB] human gut metagenome; human gut
49722
49647
-
Asn
GTT
[ENA]
¢þ
>WENV182841988
OKIB01000021
[OKIB] human gut metagenome; human gut
50714
50803
+
Ser
CGA
[ENA]
¢þ
>WENV182842013
OKIB01000063
[OKIB] human gut metagenome; human gut
51941
52015
+
Arg
CCT
[ENA]
¢þ
>WENV182842007
OKIB01000059
[OKIB] human gut metagenome; human gut
55938
55863
-
Trp
CCA
[ENA]
¢þ
>WENV182841981
OKIB01000005
[OKIB] human gut metagenome; human gut
56362
56275
-
Ser
TGA
[ENA]
¢þ
>WENV182841985
OKIB01000016
[OKIB] human gut metagenome; human gut
57999
57926
-
Gly
CCC
[ENA]
¢þ
>WENV182841996
OKIB01000028
[OKIB] human gut metagenome; human gut
61535
61448
-
Ser
GGA
[ENA]
¢þ
>WENV182841993
OKIB01000024
[OKIB] human gut metagenome; human gut
63523
63450
-
Gly
CCC
[ENA]
¢þ
>WENV182841995
OKIB01000028
[OKIB] human gut metagenome; human gut
64508
64421
-
Ser
GGA
[ENA]
¢þ
>WENV182842001
OKIB01000039
[OKIB] human gut metagenome; human gut
65847
65771
-
Arg
TCT
[ENA]
¢þ
>WENV182841997
OKIB01000031
[OKIB] human gut metagenome; human gut
72786
72711
-
Ala
GGC
[ENA]
¢þ
>WENV182841984
OKIB01000008
[OKIB] human gut metagenome; human gut
99611
99687
+
Pro
GGG
[ENA]
¢þ
>WENV182841982
OKIB01000007
[OKIB] human gut metagenome; human gut
130305
130380
+
Phe
GAA
[ENA]
¢þ
>WENV182841979
OKIB01000002
[OKIB] human gut metagenome; human gut
198459
198535
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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