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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKIJ] human gut metagenome; human gut
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182843051
OKIJ01001813
[OKIJ] human gut metagenome; human gut
74
156
+
Tyr
GTA
[ENA]
¢þ
>WENV182843015
OKIJ01000468
[OKIJ] human gut metagenome; human gut
78
3
-
Val
TAC
[ENA]
¢þ
>WENV182843023
OKIJ01000705
[OKIJ] human gut metagenome; human gut
84
160
+
Arg
ACG
[ENA]
¢þ
>WENV182843039
OKIJ01001480
[OKIJ] human gut metagenome; human gut
99
11
-
Ser
CGA
[ENA]
¢þ
>WENV182843060
OKIJ01002179
[OKIJ] human gut metagenome; human gut
105
30
-
Ala
TGC
[ENA]
¢þ
>WENV182843017
OKIJ01000474
[OKIJ] human gut metagenome; human gut
158
83
-
Lys
TTT
[ENA]
¢þ
>WENV182843037
OKIJ01001445
[OKIJ] human gut metagenome; human gut
167
242
+
Ile2
CAT
[ENA]
¢þ
>WENV182843061
OKIJ01002437
[OKIJ] human gut metagenome; human gut
168
93
-
Ala
CGC
[ENA]
¢þ
>WENV182843028
OKIJ01001015
[OKIJ] human gut metagenome; human gut
173
89
-
Tyr
GTA
[ENA]
¢þ
>WENV182843059
OKIJ01002179
[OKIJ] human gut metagenome; human gut
195
122
-
Pro
TGG
[ENA]
¢þ
>WENV182843050
OKIJ01001800
[OKIJ] human gut metagenome; human gut
212
286
+
Leu
CAA
[ENA]
¢þ
>WENV182843038
OKIJ01001478
[OKIJ] human gut metagenome; human gut
223
310
+
Leu
CAG
[ENA]
¢þ
>WENV182843054
OKIJ01002006
[OKIJ] human gut metagenome; human gut
240
315
+
Val
TAC
[ENA]
¢þ
>WENV182843048
OKIJ01001724
[OKIJ] human gut metagenome; human gut
265
191
-
Val
CAC
[ENA]
¢þ
>WENV182843052
OKIJ01001813
[OKIJ] human gut metagenome; human gut
272
345
+
Thr
GGT
[ENA]
¢þ
>WENV182843042
OKIJ01001688
[OKIJ] human gut metagenome; human gut
277
202
-
Lys
TTT
[ENA]
¢þ
>WENV182843058
OKIJ01002179
[OKIJ] human gut metagenome; human gut
278
204
-
Arg
ACG
[ENA]
¢þ
>WENV182843026
OKIJ01000927
[OKIJ] human gut metagenome; human gut
330
257
-
Gly
CCC
[ENA]
¢þ
>WENV182842990
OKIJ01000145
[OKIJ] human gut metagenome; human gut
331
247
-
Leu
CAA
[ENA]
¢þ
>WENV182842985
OKIJ01000074
[OKIJ] human gut metagenome; human gut
331
256
-
Thr
GGT
[ENA]
¢þ
>WENV182843047
OKIJ01001724
[OKIJ] human gut metagenome; human gut
337
266
-
Cys
GCA
[ENA]
¢þ
>WENV182843053
OKIJ01001813
[OKIJ] human gut metagenome; human gut
378
453
+
Met
CAT
[ENA]
¢þ
>WENV182843057
OKIJ01002179
[OKIJ] human gut metagenome; human gut
379
291
-
Leu
TAA
[ENA]
¢þ
>WENV182842984
OKIJ01000074
[OKIJ] human gut metagenome; human gut
412
338
-
Gly
TCC
[ENA]
¢þ
>WENV182843046
OKIJ01001724
[OKIJ] human gut metagenome; human gut
426
353
-
Gly
GCC
[ENA]
¢þ
>WENV182843056
OKIJ01002179
[OKIJ] human gut metagenome; human gut
465
391
-
Gly
GCC
[ENA]
¢þ
>WENV182843031
OKIJ01001056
[OKIJ] human gut metagenome; human gut
521
594
+
Glu
TTC
[ENA]
¢þ
>WENV182843027
OKIJ01000930
[OKIJ] human gut metagenome; human gut
539
466
-
Arg
CCG
[ENA]
¢þ
>WENV182843055
OKIJ01002179
[OKIJ] human gut metagenome; human gut
551
469
-
Leu
TAG
[ENA]
¢þ
>WENV182843049
OKIJ01001796
[OKIJ] human gut metagenome; human gut
585
661
+
Pro
CGG
[ENA]
¢þ
>WENV182843045
OKIJ01001713
[OKIJ] human gut metagenome; human gut
592
518
-
Asp
GTC
[ENA]
¢þ
>WENV182842983
OKIJ01000074
[OKIJ] human gut metagenome; human gut
613
529
-
Tyr
GTA
[ENA]
¢þ
>WENV182843032
OKIJ01001056
[OKIJ] human gut metagenome; human gut
667
741
+
Asp
GTC
[ENA]
¢þ
>WENV182843030
OKIJ01001017
[OKIJ] human gut metagenome; human gut
677
602
-
Ala
TGC
[ENA]
¢þ
>WENV182843044
OKIJ01001713
[OKIJ] human gut metagenome; human gut
689
598
-
Ser
TGA
[ENA]
¢þ
>WENV182842982
OKIJ01000074
[OKIJ] human gut metagenome; human gut
697
622
-
Thr
TGT
[ENA]
¢þ
>WENV182843018
OKIJ01000482
[OKIJ] human gut metagenome; human gut
700
772
+
Gln
CTG
[ENA]
¢þ
>WENV182843040
OKIJ01001522
[OKIJ] human gut metagenome; human gut
710
635
-
Thr
TGT
[ENA]
¢þ
>WENV182843022
OKIJ01000568
[OKIJ] human gut metagenome; human gut
738
812
+
Leu
TAA
[ENA]
¢þ
>WENV182843043
OKIJ01001713
[OKIJ] human gut metagenome; human gut
771
698
-
Ile2
CAT
[ENA]
¢þ
>WENV182843019
OKIJ01000482
[OKIJ] human gut metagenome; human gut
806
879
+
Glu
CTC
[ENA]
¢þ
>WENV182843041
OKIJ01001535
[OKIJ] human gut metagenome; human gut
886
815
-
Gln
TTG
[ENA]
¢þ
>WENV182843036
OKIJ01001214
[OKIJ] human gut metagenome; human gut
952
1026
+
Pro
GGG
[ENA]
¢þ
>WENV182843035
OKIJ01001206
[OKIJ] human gut metagenome; human gut
983
907
-
fMet
CAT
[ENA]
¢þ
>WENV182843029
OKIJ01001017
[OKIJ] human gut metagenome; human gut
1015
941
-
Ile
GAT
[ENA]
¢þ
>WENV182843034
OKIJ01001151
[OKIJ] human gut metagenome; human gut
1167
1241
+
Lys
CTT
[ENA]
¢þ
>WENV182843001
OKIJ01000243
[OKIJ] human gut metagenome; human gut
1223
1147
-
Val
GAC
[ENA]
¢þ
>WENV182843025
OKIJ01000794
[OKIJ] human gut metagenome; human gut
1264
1179
-
Ser
GGA
[ENA]
¢þ
>WENV182843033
OKIJ01001119
[OKIJ] human gut metagenome; human gut
1297
1224
-
Gly
TCC
[ENA]
¢þ
>WENV182843000
OKIJ01000243
[OKIJ] human gut metagenome; human gut
1304
1228
-
Val
GAC
[ENA]
¢þ
>WENV182843016
OKIJ01000473
[OKIJ] human gut metagenome; human gut
1372
1296
-
Arg
TCT
[ENA]
¢þ
>WENV182843024
OKIJ01000739
[OKIJ] human gut metagenome; human gut
1603
1528
-
Ile2
CAT
[ENA]
¢þ
>WENV182843009
OKIJ01000362
[OKIJ] human gut metagenome; human gut
1776
1851
+
Asn
GTT
[ENA]
¢þ
>WENV182842980
OKIJ01000044
[OKIJ] human gut metagenome; human gut
1920
1834
-
Leu
GAG
[ENA]
¢þ
>WENV182843021
OKIJ01000515
[OKIJ] human gut metagenome; human gut
2648
2723
+
Thr
CGT
[ENA]
¢þ
>WENV182843013
OKIJ01000468
[OKIJ] human gut metagenome; human gut
2773
2848
+
Ala
GGC
[ENA]
¢þ
>WENV182843014
OKIJ01000468
[OKIJ] human gut metagenome; human gut
2890
2965
+
Ala
GGC
[ENA]
¢þ
>WENV182842978
OKIJ01000025
[OKIJ] human gut metagenome; human gut
2892
2968
+
Asp
GTC
[ENA]
¢þ
>WENV182843010
OKIJ01000422
[OKIJ] human gut metagenome; human gut
2964
3039
+
Phe
GAA
[ENA]
¢þ
>WENV182843020
OKIJ01000487
[OKIJ] human gut metagenome; human gut
3158
3230
+
Asn
GTT
[ENA]
¢þ
>WENV182843012
OKIJ01000442
[OKIJ] human gut metagenome; human gut
3574
3650
+
Pro
GGG
[ENA]
¢þ
>WENV182843011
OKIJ01000426
[OKIJ] human gut metagenome; human gut
3773
3860
+
Ser
TGA
[ENA]
¢þ
>WENV182842992
OKIJ01000177
[OKIJ] human gut metagenome; human gut
4514
4590
+
fMet
CAT
[ENA]
¢þ
>WENV182843006
OKIJ01000284
[OKIJ] human gut metagenome; human gut
4618
4704
+
Leu
CAG
[ENA]
¢þ
>WENV182842997
OKIJ01000232
[OKIJ] human gut metagenome; human gut
4682
4757
+
Gly
GCC
[ENA]
¢þ
>WENV182843007
OKIJ01000284
[OKIJ] human gut metagenome; human gut
4733
4818
+
Leu
CAG
[ENA]
¢þ
>WENV182842993
OKIJ01000177
[OKIJ] human gut metagenome; human gut
4762
4838
+
fMet
CAT
[ENA]
¢þ
>WENV182842998
OKIJ01000232
[OKIJ] human gut metagenome; human gut
4809
4882
+
Cys
GCA
[ENA]
¢þ
>WENV182843008
OKIJ01000284
[OKIJ] human gut metagenome; human gut
4851
4937
+
Leu
CAG
[ENA]
¢þ
>WENV182842994
OKIJ01000177
[OKIJ] human gut metagenome; human gut
4883
4959
+
fMet
CAT
[ENA]
¢þ
>WENV182842999
OKIJ01000232
[OKIJ] human gut metagenome; human gut
4894
4980
+
Leu
TAA
[ENA]
¢þ
>WENV182843005
OKIJ01000279
[OKIJ] human gut metagenome; human gut
5531
5618
+
Ser
GGA
[ENA]
¢þ
>WENV182843004
OKIJ01000271
[OKIJ] human gut metagenome; human gut
5765
5690
-
Lys
TTT
[ENA]
¢þ
>WENV182843003
OKIJ01000271
[OKIJ] human gut metagenome; human gut
5872
5797
-
Lys
TTT
[ENA]
¢þ
>WENV182842996
OKIJ01000183
[OKIJ] human gut metagenome; human gut
6262
6187
-
Phe
GAA
[ENA]
¢þ
>WENV182843002
OKIJ01000246
[OKIJ] human gut metagenome; human gut
6310
6234
-
Pro
TGG
[ENA]
¢þ
>WENV182842991
OKIJ01000163
[OKIJ] human gut metagenome; human gut
6666
6753
+
Ser
TGA
[ENA]
¢þ
>WENV182842995
OKIJ01000179
[OKIJ] human gut metagenome; human gut
7935
8029
+
SeC
TCA
[ENA]
¢þ
>WENV182842981
OKIJ01000074
[OKIJ] human gut metagenome; human gut
8410
8334
-
Pro
TGG
[ENA]
¢þ
>WENV182842988
OKIJ01000107
[OKIJ] human gut metagenome; human gut
12279
12355
+
Arg
CCG
[ENA]
¢þ
>WENV182842989
OKIJ01000107
[OKIJ] human gut metagenome; human gut
12423
12498
+
His
GTG
[ENA]
¢þ
>WENV182842986
OKIJ01000099
[OKIJ] human gut metagenome; human gut
12686
12778
+
Ser
GCT
[ENA]
¢þ
>WENV182842987
OKIJ01000099
[OKIJ] human gut metagenome; human gut
12783
12859
+
Arg
ACG
[ENA]
¢þ
>WENV182842979
OKIJ01000026
[OKIJ] human gut metagenome; human gut
18534
18606
+
Arg
CCT
[ENA]
¢þ
>WENV182842977
OKIJ01000018
[OKIJ] human gut metagenome; human gut
20948
20861
-
Ser
TGA
[ENA]
¢þ
>WENV182842976
OKIJ01000001
[OKIJ] human gut metagenome; human gut
40346
40419
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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