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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKIS] human gut metagenome; human gut
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182844428
OKIS01000482
[OKIS] human gut metagenome; human gut
76
2
-
Asn
GTT
[ENA]
¢þ
>WENV182844419
OKIS01000280
[OKIS] human gut metagenome; human gut
103
29
-
Arg
TCT
[ENA]
¢þ
>WENV182844435
OKIS01001315
[OKIS] human gut metagenome; human gut
139
214
+
Arg
ACG
[ENA]
¢þ
>WENV182844427
OKIS01000423
[OKIS] human gut metagenome; human gut
148
74
-
Ala
TGC
[ENA]
¢þ
>WENV182844436
OKIS01001315
[OKIS] human gut metagenome; human gut
219
292
+
Pro
TGG
[ENA]
¢þ
>WENV182844426
OKIS01000423
[OKIS] human gut metagenome; human gut
279
203
-
Ile
GAT
[ENA]
¢þ
>WENV182844425
OKIS01000423
[OKIS] human gut metagenome; human gut
447
373
-
Phe
GAA
[ENA]
¢þ
>WENV182844444
OKIS01001606
[OKIS] human gut metagenome; human gut
457
367
-
Ser
GGA
[ENA]
¢þ
>WENV182844432
OKIS01000692
[OKIS] human gut metagenome; human gut
490
562
+
Thr
GGT
[ENA]
¢þ
>WENV182844424
OKIS01000423
[OKIS] human gut metagenome; human gut
527
452
-
Asp
GTC
[ENA]
¢þ
>WENV182844443
OKIS01001606
[OKIS] human gut metagenome; human gut
581
508
-
Glu
TTC
[ENA]
¢þ
>WENV182844423
OKIS01000423
[OKIS] human gut metagenome; human gut
620
533
-
Ser
TGA
[ENA]
¢þ
>WENV182844433
OKIS01000865
[OKIS] human gut metagenome; human gut
637
707
+
Gly
CCC
[ENA]
¢þ
>WENV182844442
OKIS01001606
[OKIS] human gut metagenome; human gut
656
582
-
Asn
GTT
[ENA]
¢þ
>WENV182844441
OKIS01001606
[OKIS] human gut metagenome; human gut
739
666
-
Gly
TCC
[ENA]
¢þ
>WENV182844431
OKIS01000528
[OKIS] human gut metagenome; human gut
756
670
-
Leu
CAG
[ENA]
¢þ
>WENV182844440
OKIS01001606
[OKIS] human gut metagenome; human gut
832
757
-
His
GTG
[ENA]
¢þ
>WENV182844439
OKIS01001606
[OKIS] human gut metagenome; human gut
919
845
-
Phe
GAA
[ENA]
¢þ
>WENV182844438
OKIS01001606
[OKIS] human gut metagenome; human gut
1004
929
-
Asp
GTC
[ENA]
¢þ
>WENV182844445
OKIS01001661
[OKIS] human gut metagenome; human gut
1057
965
-
Ser
GGA
[ENA]
¢þ
>WENV182844437
OKIS01001606
[OKIS] human gut metagenome; human gut
1092
1019
-
fMet
CAT
[ENA]
¢þ
>WENV182844418
OKIS01000274
[OKIS] human gut metagenome; human gut
1595
1521
-
Arg
CCT
[ENA]
¢þ
>WENV182844411
OKIS01000088
[OKIS] human gut metagenome; human gut
1772
1699
-
Arg
CCG
[ENA]
¢þ
>WENV182844434
OKIS01000953
[OKIS] human gut metagenome; human gut
1800
1727
-
Glu
TTC
[ENA]
¢þ
>WENV182844412
OKIS01000145
[OKIS] human gut metagenome; human gut
2133
2058
-
Arg
TCT
[ENA]
¢þ
>WENV182844422
OKIS01000391
[OKIS] human gut metagenome; human gut
2200
2275
+
Thr
CGT
[ENA]
¢þ
>WENV182844430
OKIS01000518
[OKIS] human gut metagenome; human gut
2412
2322
-
Ser
GCT
[ENA]
¢þ
>WENV182844429
OKIS01000518
[OKIS] human gut metagenome; human gut
2489
2415
-
Asn
GTT
[ENA]
¢þ
>WENV182844421
OKIS01000300
[OKIS] human gut metagenome; human gut
2919
2992
+
Gln
TTG
[ENA]
¢þ
>WENV182844416
OKIS01000217
[OKIS] human gut metagenome; human gut
4013
3939
-
Val
TAC
[ENA]
¢þ
>WENV182844415
OKIS01000217
[OKIS] human gut metagenome; human gut
4092
4017
-
His
GTG
[ENA]
¢þ
>WENV182844414
OKIS01000217
[OKIS] human gut metagenome; human gut
4176
4104
-
Trp
CCA
[ENA]
¢þ
>WENV182844413
OKIS01000217
[OKIS] human gut metagenome; human gut
4261
4180
-
Tyr
GTA
[ENA]
¢þ
>WENV182844420
OKIS01000290
[OKIS] human gut metagenome; human gut
4496
4570
+
Thr
AGT
[ENA]
¢þ
>WENV182844417
OKIS01000224
[OKIS] human gut metagenome; human gut
4670
4599
-
Arg
CCG
[ENA]
¢þ
>WENV182844410
OKIS01000083
[OKIS] human gut metagenome; human gut
4946
4872
-
Lys
CTT
[ENA]
¢þ
>WENV182844396
OKIS01000005
[OKIS] human gut metagenome; human gut
6931
7004
+
Glu
CTC
[ENA]
¢þ
>WENV182844397
OKIS01000005
[OKIS] human gut metagenome; human gut
7009
7081
+
Gln
CTG
[ENA]
¢þ
>WENV182844409
OKIS01000066
[OKIS] human gut metagenome; human gut
7363
7455
+
Ser
TGA
[ENA]
¢þ
>WENV182844401
OKIS01000042
[OKIS] human gut metagenome; human gut
8984
9059
+
Val
TAC
[ENA]
¢þ
>WENV182844402
OKIS01000042
[OKIS] human gut metagenome; human gut
9066
9141
+
Thr
TGT
[ENA]
¢þ
>WENV182844403
OKIS01000042
[OKIS] human gut metagenome; human gut
9147
9221
+
Lys
TTT
[ENA]
¢þ
>WENV182844404
OKIS01000042
[OKIS] human gut metagenome; human gut
9239
9313
+
Gly
GCC
[ENA]
¢þ
>WENV182844405
OKIS01000042
[OKIS] human gut metagenome; human gut
9325
9413
+
Leu
TAA
[ENA]
¢þ
>WENV182844406
OKIS01000042
[OKIS] human gut metagenome; human gut
9426
9502
+
Arg
ACG
[ENA]
¢þ
>WENV182844407
OKIS01000042
[OKIS] human gut metagenome; human gut
9529
9603
+
Pro
TGG
[ENA]
¢þ
>WENV182844408
OKIS01000042
[OKIS] human gut metagenome; human gut
9617
9692
+
Ala
TGC
[ENA]
¢þ
>WENV182844400
OKIS01000015
[OKIS] human gut metagenome; human gut
13779
13707
-
Trp
CCA
[ENA]
¢þ
>WENV182844399
OKIS01000015
[OKIS] human gut metagenome; human gut
14333
14258
-
Gln
TTG
[ENA]
¢þ
>WENV182844398
OKIS01000013
[OKIS] human gut metagenome; human gut
14763
14678
-
Leu
AAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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