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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKIV] human gut metagenome; human gut
HIT:
82 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182844596
OKIV01000227
[OKIV] human gut metagenome; human gut
15
90
+
Arg
CCT
[ENA]
¢þ
>WENV182844602
OKIV01001445
[OKIV] human gut metagenome; human gut
68
141
+
Glu
TTC
[ENA]
¢þ
>WENV182844565
OKIV01000019
[OKIV] human gut metagenome; human gut
71
147
+
Val
GAC
[ENA]
¢þ
>WENV182844578
OKIV01000039
[OKIV] human gut metagenome; human gut
82
7
-
Phe
GAA
[ENA]
¢þ
>WENV182844569
OKIV01000028
[OKIV] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182844599
OKIV01001050
[OKIV] human gut metagenome; human gut
124
197
+
Arg
CCG
[ENA]
¢þ
>WENV182844566
OKIV01000019
[OKIV] human gut metagenome; human gut
152
228
+
Val
GAC
[ENA]
¢þ
>WENV182844603
OKIV01001445
[OKIV] human gut metagenome; human gut
153
242
+
Ser
TGA
[ENA]
¢þ
>WENV182844600
OKIV01001203
[OKIV] human gut metagenome; human gut
202
127
-
Glu
TTC
[ENA]
¢þ
>WENV182844604
OKIV01001445
[OKIV] human gut metagenome; human gut
275
350
+
fMet
CAT
[ENA]
¢þ
>WENV182844605
OKIV01001445
[OKIV] human gut metagenome; human gut
388
464
+
Asp
GTC
[ENA]
¢þ
>WENV182844606
OKIV01001445
[OKIV] human gut metagenome; human gut
466
536
+
Gly
TCC
[ENA]
¢þ
>WENV182844601
OKIV01001325
[OKIV] human gut metagenome; human gut
543
618
+
Thr
TGT
[ENA]
¢þ
>WENV182844607
OKIV01001445
[OKIV] human gut metagenome; human gut
545
620
+
Ile
GAT
[ENA]
¢þ
>WENV182844568
OKIV01000024
[OKIV] human gut metagenome; human gut
605
519
-
Leu
GAG
[ENA]
¢þ
>WENV182844585
OKIV01000160
[OKIV] human gut metagenome; human gut
611
685
+
Val
TAC
[ENA]
¢þ
>WENV182844586
OKIV01000160
[OKIV] human gut metagenome; human gut
695
770
+
Asp
GTC
[ENA]
¢þ
>WENV182844587
OKIV01000160
[OKIV] human gut metagenome; human gut
816
888
+
Phe
GAA
[ENA]
¢þ
>WENV182844588
OKIV01000160
[OKIV] human gut metagenome; human gut
893
975
+
Tyr
GTA
[ENA]
¢þ
>WENV182844598
OKIV01000689
[OKIV] human gut metagenome; human gut
899
827
-
Asn
GTT
[ENA]
¢þ
>WENV182844589
OKIV01000160
[OKIV] human gut metagenome; human gut
979
1052
+
Trp
CCA
[ENA]
¢þ
>WENV182844590
OKIV01000160
[OKIV] human gut metagenome; human gut
1089
1162
+
His
GTG
[ENA]
¢þ
>WENV182844591
OKIV01000160
[OKIV] human gut metagenome; human gut
1175
1248
+
Gln
TTG
[ENA]
¢þ
>WENV182844592
OKIV01000160
[OKIV] human gut metagenome; human gut
1273
1343
+
Cys
GCA
[ENA]
¢þ
>WENV182844593
OKIV01000160
[OKIV] human gut metagenome; human gut
1356
1441
+
Leu
CAA
[ENA]
¢þ
>WENV182844597
OKIV01000291
[OKIV] human gut metagenome; human gut
1530
1605
+
Arg
TCT
[ENA]
¢þ
>WENV182844584
OKIV01000085
[OKIV] human gut metagenome; human gut
1973
2045
+
Ala
TGC
[ENA]
¢þ
>WENV182844595
OKIV01000209
[OKIV] human gut metagenome; human gut
2136
2061
-
Ile2
CAT
[ENA]
¢þ
>WENV182844594
OKIV01000209
[OKIV] human gut metagenome; human gut
2230
2155
-
Met
CAT
[ENA]
¢þ
>WENV182844581
OKIV01000076
[OKIV] human gut metagenome; human gut
3841
3916
+
Thr
TGT
[ENA]
¢þ
>WENV182844582
OKIV01000076
[OKIV] human gut metagenome; human gut
3927
4011
+
Tyr
GTA
[ENA]
¢þ
>WENV182844583
OKIV01000076
[OKIV] human gut metagenome; human gut
4127
4201
+
Gly
TCC
[ENA]
¢þ
>WENV182844580
OKIV01000055
[OKIV] human gut metagenome; human gut
7173
7097
-
fMet
CAT
[ENA]
¢þ
>WENV182844570
OKIV01000028
[OKIV] human gut metagenome; human gut
9558
9634
+
Asp
GTC
[ENA]
¢þ
>WENV182844572
OKIV01000035
[OKIV] human gut metagenome; human gut
18014
18098
+
Leu
CAA
[ENA]
¢þ
>WENV182844579
OKIV01000050
[OKIV] human gut metagenome; human gut
22671
22596
-
Trp
CCA
[ENA]
¢þ
>WENV182844561
OKIV01000015
[OKIV] human gut metagenome; human gut
23014
22941
-
Gly
CCC
[ENA]
¢þ
>WENV182844577
OKIV01000038
[OKIV] human gut metagenome; human gut
23739
23652
-
Ser
TGA
[ENA]
¢þ
>WENV182844562
OKIV01000016
[OKIV] human gut metagenome; human gut
27167
27243
+
fMet
CAT
[ENA]
¢þ
>WENV182844563
OKIV01000016
[OKIV] human gut metagenome; human gut
27277
27353
+
fMet
CAT
[ENA]
¢þ
>WENV182844564
OKIV01000016
[OKIV] human gut metagenome; human gut
27387
27463
+
fMet
CAT
[ENA]
¢þ
>WENV182844576
OKIV01000037
[OKIV] human gut metagenome; human gut
31315
31239
-
Pro
TGG
[ENA]
¢þ
>WENV182844575
OKIV01000037
[OKIV] human gut metagenome; human gut
31444
31358
-
Leu
CAG
[ENA]
¢þ
>WENV182844574
OKIV01000037
[OKIV] human gut metagenome; human gut
31543
31468
-
His
GTG
[ENA]
¢þ
>WENV182844573
OKIV01000037
[OKIV] human gut metagenome; human gut
31675
31599
-
Arg
CCG
[ENA]
¢þ
>WENV182844548
OKIV01000008
[OKIV] human gut metagenome; human gut
37764
37670
-
SeC
TCA
[ENA]
¢þ
>WENV182844571
OKIV01000028
[OKIV] human gut metagenome; human gut
70519
70444
-
Thr
CGT
[ENA]
¢þ
>WENV182844551
OKIV01000012
[OKIV] human gut metagenome; human gut
72521
72434
-
Ser
GGA
[ENA]
¢þ
>WENV182844558
OKIV01000013
[OKIV] human gut metagenome; human gut
74060
73986
-
Gln
CTG
[ENA]
¢þ
>WENV182844557
OKIV01000013
[OKIV] human gut metagenome; human gut
74210
74136
-
Gln
CTG
[ENA]
¢þ
>WENV182844556
OKIV01000013
[OKIV] human gut metagenome; human gut
74334
74258
-
Met
CAT
[ENA]
¢þ
>WENV182844555
OKIV01000013
[OKIV] human gut metagenome; human gut
74432
74358
-
Gln
TTG
[ENA]
¢þ
>WENV182844554
OKIV01000013
[OKIV] human gut metagenome; human gut
74543
74469
-
Gln
TTG
[ENA]
¢þ
>WENV182844553
OKIV01000013
[OKIV] human gut metagenome; human gut
74651
74567
-
Leu
TAG
[ENA]
¢þ
>WENV182844552
OKIV01000013
[OKIV] human gut metagenome; human gut
74736
74660
-
Met
CAT
[ENA]
¢þ
>WENV182844550
OKIV01000012
[OKIV] human gut metagenome; human gut
77580
77493
-
Ser
GGA
[ENA]
¢þ
>WENV182844567
OKIV01000023
[OKIV] human gut metagenome; human gut
88056
87970
-
Leu
CAG
[ENA]
¢þ
>WENV182844549
OKIV01000009
[OKIV] human gut metagenome; human gut
107110
107185
+
Ile2
CAT
[ENA]
¢þ
>WENV182844526
OKIV01000002
[OKIV] human gut metagenome; human gut
108693
108777
+
Tyr
GTA
[ENA]
¢þ
>WENV182844527
OKIV01000002
[OKIV] human gut metagenome; human gut
108994
109078
+
Tyr
GTA
[ENA]
¢þ
>WENV182844560
OKIV01000015
[OKIV] human gut metagenome; human gut
110895
110970
+
Phe
GAA
[ENA]
¢þ
>WENV182844559
OKIV01000014
[OKIV] human gut metagenome; human gut
112936
113012
+
Arg
TCT
[ENA]
¢þ
>WENV182844542
OKIV01000006
[OKIV] human gut metagenome; human gut
124837
124929
+
Ser
GCT
[ENA]
¢þ
>WENV182844543
OKIV01000006
[OKIV] human gut metagenome; human gut
124934
125010
+
Arg
ACG
[ENA]
¢þ
>WENV182844544
OKIV01000006
[OKIV] human gut metagenome; human gut
125161
125237
+
Arg
ACG
[ENA]
¢þ
>WENV182844545
OKIV01000006
[OKIV] human gut metagenome; human gut
125299
125375
+
Arg
ACG
[ENA]
¢þ
>WENV182844546
OKIV01000006
[OKIV] human gut metagenome; human gut
125604
125680
+
Arg
ACG
[ENA]
¢þ
>WENV182844536
OKIV01000003
[OKIV] human gut metagenome; human gut
144506
144582
+
Pro
GGG
[ENA]
¢þ
>WENV182844547
OKIV01000008
[OKIV] human gut metagenome; human gut
168464
168540
+
Pro
CGG
[ENA]
¢þ
>WENV182844537
OKIV01000003
[OKIV] human gut metagenome; human gut
261367
261441
+
Arg
CCT
[ENA]
¢þ
>WENV182844541
OKIV01000003
[OKIV] human gut metagenome; human gut
281836
281761
-
Ala
GGC
[ENA]
¢þ
>WENV182844540
OKIV01000003
[OKIV] human gut metagenome; human gut
281953
281878
-
Ala
GGC
[ENA]
¢þ
>WENV182844538
OKIV01000003
[OKIV] human gut metagenome; human gut
284652
284727
+
Val
TAC
[ENA]
¢þ
>WENV182844539
OKIV01000003
[OKIV] human gut metagenome; human gut
284774
284849
+
Val
TAC
[ENA]
¢þ
>WENV182844535
OKIV01000002
[OKIV] human gut metagenome; human gut
357702
357616
-
Leu
TAA
[ENA]
¢þ
>WENV182844534
OKIV01000002
[OKIV] human gut metagenome; human gut
357789
357716
-
Cys
GCA
[ENA]
¢þ
>WENV182844533
OKIV01000002
[OKIV] human gut metagenome; human gut
357905
357830
-
Gly
GCC
[ENA]
¢þ
>WENV182844532
OKIV01000002
[OKIV] human gut metagenome; human gut
379100
379011
-
Ser
CGA
[ENA]
¢þ
>WENV182844528
OKIV01000002
[OKIV] human gut metagenome; human gut
380092
380167
+
Asn
GTT
[ENA]
¢þ
>WENV182844529
OKIV01000002
[OKIV] human gut metagenome; human gut
384976
385051
+
Asn
GTT
[ENA]
¢þ
>WENV182844531
OKIV01000002
[OKIV] human gut metagenome; human gut
393969
393894
-
Asn
GTT
[ENA]
¢þ
>WENV182844530
OKIV01000002
[OKIV] human gut metagenome; human gut
395727
395802
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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