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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKIW] human gut metagenome; human gut
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182844659
OKIW01001082
[OKIW] human gut metagenome; human gut
70
140
+
Gly
TCC
[ENA]
¢þ
>WENV182844639
OKIW01000025
[OKIW] human gut metagenome; human gut
99
174
+
Trp
CCA
[ENA]
¢þ
>WENV182844625
OKIW01000010
[OKIW] human gut metagenome; human gut
114
39
-
Phe
GAA
[ENA]
¢þ
>WENV182844637
OKIW01000024
[OKIW] human gut metagenome; human gut
121
195
+
Gln
CTG
[ENA]
¢þ
>WENV182844658
OKIW01000110
[OKIW] human gut metagenome; human gut
128
54
-
Val
TAC
[ENA]
¢þ
>WENV182844660
OKIW01001082
[OKIW] human gut metagenome; human gut
154
227
+
Ile
GAT
[ENA]
¢þ
>WENV182844661
OKIW01001082
[OKIW] human gut metagenome; human gut
237
326
+
Ser
GCT
[ENA]
¢þ
>WENV182844652
OKIW01000033
[OKIW] human gut metagenome; human gut
249
325
+
Arg
ACG
[ENA]
¢þ
>WENV182844638
OKIW01000024
[OKIW] human gut metagenome; human gut
293
367
+
Gln
CTG
[ENA]
¢þ
>WENV182844662
OKIW01001082
[OKIW] human gut metagenome; human gut
340
413
+
Glu
TTC
[ENA]
¢þ
>WENV182844663
OKIW01001082
[OKIW] human gut metagenome; human gut
425
514
+
Ser
TGA
[ENA]
¢þ
>WENV182844611
OKIW01000002
[OKIW] human gut metagenome; human gut
1407
1335
-
Arg
CCT
[ENA]
¢þ
>WENV182844620
OKIW01000008
[OKIW] human gut metagenome; human gut
2923
2999
+
Asp
GTC
[ENA]
¢þ
>WENV182844654
OKIW01000067
[OKIW] human gut metagenome; human gut
3561
3636
+
Thr
TGT
[ENA]
¢þ
>WENV182844655
OKIW01000067
[OKIW] human gut metagenome; human gut
3647
3731
+
Tyr
GTA
[ENA]
¢þ
>WENV182844656
OKIW01000067
[OKIW] human gut metagenome; human gut
3851
3925
+
Gly
TCC
[ENA]
¢þ
>WENV182844657
OKIW01000067
[OKIW] human gut metagenome; human gut
3931
4006
+
Thr
GGT
[ENA]
¢þ
>WENV182844621
OKIW01000008
[OKIW] human gut metagenome; human gut
12353
12429
+
Asp
GTC
[ENA]
¢þ
>WENV182844651
OKIW01000030
[OKIW] human gut metagenome; human gut
15483
15394
-
Ser
CGA
[ENA]
¢þ
>WENV182844647
OKIW01000030
[OKIW] human gut metagenome; human gut
16475
16550
+
Asn
GTT
[ENA]
¢þ
>WENV182844628
OKIW01000011
[OKIW] human gut metagenome; human gut
19657
19582
-
Ala
GGC
[ENA]
¢þ
>WENV182844653
OKIW01000036
[OKIW] human gut metagenome; human gut
20338
20432
+
SeC
TCA
[ENA]
¢þ
>WENV182844626
OKIW01000011
[OKIW] human gut metagenome; human gut
22366
22441
+
Val
TAC
[ENA]
¢þ
>WENV182844627
OKIW01000011
[OKIW] human gut metagenome; human gut
22446
22521
+
Lys
TTT
[ENA]
¢þ
>WENV182844623
OKIW01000010
[OKIW] human gut metagenome; human gut
39208
39283
+
Gly
GCC
[ENA]
¢þ
>WENV182844640
OKIW01000025
[OKIW] human gut metagenome; human gut
40347
40423
+
Arg
CCG
[ENA]
¢þ
>WENV182844641
OKIW01000025
[OKIW] human gut metagenome; human gut
40479
40554
+
His
GTG
[ENA]
¢þ
>WENV182844642
OKIW01000025
[OKIW] human gut metagenome; human gut
40577
40663
+
Leu
CAG
[ENA]
¢þ
>WENV182844643
OKIW01000025
[OKIW] human gut metagenome; human gut
40709
40785
+
Pro
TGG
[ENA]
¢þ
>WENV182844650
OKIW01000030
[OKIW] human gut metagenome; human gut
49637
49562
-
Asn
GTT
[ENA]
¢þ
>WENV182844648
OKIW01000030
[OKIW] human gut metagenome; human gut
51414
51489
+
Asn
GTT
[ENA]
¢þ
>WENV182844633
OKIW01000017
[OKIW] human gut metagenome; human gut
53010
52937
-
Gly
CCC
[ENA]
¢þ
>WENV182844636
OKIW01000022
[OKIW] human gut metagenome; human gut
56706
56630
-
fMet
CAT
[ENA]
¢þ
>WENV182844635
OKIW01000022
[OKIW] human gut metagenome; human gut
60656
60570
-
Leu
GAG
[ENA]
¢þ
>WENV182844649
OKIW01000030
[OKIW] human gut metagenome; human gut
63171
63246
+
Asn
GTT
[ENA]
¢þ
>WENV182844629
OKIW01000012
[OKIW] human gut metagenome; human gut
75715
75801
+
Leu
CAG
[ENA]
¢þ
>WENV182844634
OKIW01000018
[OKIW] human gut metagenome; human gut
87867
87942
+
Ile2
CAT
[ENA]
¢þ
>WENV182844644
OKIW01000028
[OKIW] human gut metagenome; human gut
93563
93639
+
Met
CAT
[ENA]
¢þ
>WENV182844645
OKIW01000028
[OKIW] human gut metagenome; human gut
93648
93732
+
Leu
TAG
[ENA]
¢þ
>WENV182844646
OKIW01000028
[OKIW] human gut metagenome; human gut
93768
93842
+
Gln
TTG
[ENA]
¢þ
>WENV182844622
OKIW01000008
[OKIW] human gut metagenome; human gut
95592
95517
-
Thr
CGT
[ENA]
¢þ
>WENV182844618
OKIW01000005
[OKIW] human gut metagenome; human gut
117822
117746
-
fMet
CAT
[ENA]
¢þ
>WENV182844619
OKIW01000006
[OKIW] human gut metagenome; human gut
127720
127644
-
Pro
CGG
[ENA]
¢þ
>WENV182844613
OKIW01000004
[OKIW] human gut metagenome; human gut
128031
128118
+
Ser
GGA
[ENA]
¢þ
>WENV182844614
OKIW01000004
[OKIW] human gut metagenome; human gut
131260
131347
+
Ser
GGA
[ENA]
¢þ
>WENV182844610
OKIW01000002
[OKIW] human gut metagenome; human gut
145126
145050
-
Pro
GGG
[ENA]
¢þ
>WENV182844612
OKIW01000003
[OKIW] human gut metagenome; human gut
157627
157551
-
Arg
TCT
[ENA]
¢þ
>WENV182844609
OKIW01000001
[OKIW] human gut metagenome; human gut
158691
158615
-
Val
GAC
[ENA]
¢þ
>WENV182844608
OKIW01000001
[OKIW] human gut metagenome; human gut
158772
158696
-
Val
GAC
[ENA]
¢þ
>WENV182844632
OKIW01000013
[OKIW] human gut metagenome; human gut
178395
178309
-
Leu
TAA
[ENA]
¢þ
>WENV182844631
OKIW01000013
[OKIW] human gut metagenome; human gut
178482
178409
-
Cys
GCA
[ENA]
¢þ
>WENV182844630
OKIW01000013
[OKIW] human gut metagenome; human gut
178596
178521
-
Gly
GCC
[ENA]
¢þ
>WENV182844624
OKIW01000010
[OKIW] human gut metagenome; human gut
181319
181403
+
Leu
CAA
[ENA]
¢þ
>WENV182844615
OKIW01000004
[OKIW] human gut metagenome; human gut
274481
274394
-
Ser
TGA
[ENA]
¢þ
>WENV182844616
OKIW01000005
[OKIW] human gut metagenome; human gut
285900
285992
+
Ser
GCT
[ENA]
¢þ
>WENV182844617
OKIW01000005
[OKIW] human gut metagenome; human gut
285997
286073
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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