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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKJN] human gut metagenome; human gut
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182846465
OKJN01001029
[OKJN] human gut metagenome; human gut
37
127
+
Ser
GCT
[ENA]
¢þ
>WENV182846466
OKJN01001043
[OKJN] human gut metagenome; human gut
61
135
+
Ile2
CAT
[ENA]
¢þ
>WENV182846468
OKJN01001520
[OKJN] human gut metagenome; human gut
75
1
-
Thr
TGT
[ENA]
¢þ
>WENV182846467
OKJN01001520
[OKJN] human gut metagenome; human gut
155
81
-
Asn
GTT
[ENA]
¢þ
>WENV182846458
OKJN01000259
[OKJN] human gut metagenome; human gut
173
83
-
Ser
CGA
[ENA]
¢þ
>WENV182846445
OKJN01000003
[OKJN] human gut metagenome; human gut
195
119
-
Asp
GTC
[ENA]
¢þ
>WENV182846470
OKJN01001722
[OKJN] human gut metagenome; human gut
399
313
-
Leu
CAG
[ENA]
¢þ
>WENV182846464
OKJN01000874
[OKJN] human gut metagenome; human gut
455
368
-
Ser
GGA
[ENA]
¢þ
>WENV182846469
OKJN01001597
[OKJN] human gut metagenome; human gut
623
698
+
Thr
CGT
[ENA]
¢þ
>WENV182846457
OKJN01000197
[OKJN] human gut metagenome; human gut
651
576
-
Asn
GTT
[ENA]
¢þ
>WENV182846459
OKJN01000460
[OKJN] human gut metagenome; human gut
709
784
+
Thr
TGT
[ENA]
¢þ
>WENV182846460
OKJN01000460
[OKJN] human gut metagenome; human gut
795
879
+
Tyr
GTA
[ENA]
¢þ
>WENV182846461
OKJN01000460
[OKJN] human gut metagenome; human gut
885
960
+
fMet
CAT
[ENA]
¢þ
>WENV182846462
OKJN01000460
[OKJN] human gut metagenome; human gut
991
1066
+
Thr
GGT
[ENA]
¢þ
>WENV182846463
OKJN01000460
[OKJN] human gut metagenome; human gut
1072
1148
+
Met
CAT
[ENA]
¢þ
>WENV182846456
OKJN01000019
[OKJN] human gut metagenome; human gut
2808
2724
-
Tyr
GTA
[ENA]
¢þ
>WENV182846455
OKJN01000019
[OKJN] human gut metagenome; human gut
2892
2817
-
Thr
TGT
[ENA]
¢þ
>WENV182846446
OKJN01000007
[OKJN] human gut metagenome; human gut
3434
3509
+
Val
TAC
[ENA]
¢þ
>WENV182846447
OKJN01000007
[OKJN] human gut metagenome; human gut
3526
3609
+
Tyr
GTA
[ENA]
¢þ
>WENV182846444
OKJN01000003
[OKJN] human gut metagenome; human gut
3592
3517
-
Glu
TTC
[ENA]
¢þ
>WENV182846448
OKJN01000007
[OKJN] human gut metagenome; human gut
3614
3688
+
Gln
TTG
[ENA]
¢þ
>WENV182846449
OKJN01000007
[OKJN] human gut metagenome; human gut
3692
3767
+
Lys
TTT
[ENA]
¢þ
>WENV182846450
OKJN01000007
[OKJN] human gut metagenome; human gut
3776
3858
+
Leu
TAG
[ENA]
¢þ
>WENV182846451
OKJN01000007
[OKJN] human gut metagenome; human gut
3862
3936
+
Gly
GCC
[ENA]
¢þ
>WENV182846452
OKJN01000007
[OKJN] human gut metagenome; human gut
3948
4036
+
Leu
TAA
[ENA]
¢þ
>WENV182846453
OKJN01000007
[OKJN] human gut metagenome; human gut
4049
4123
+
Arg
ACG
[ENA]
¢þ
>WENV182846454
OKJN01000007
[OKJN] human gut metagenome; human gut
4132
4205
+
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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