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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKJR] human gut metagenome; human gut
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182846747
OKJR01001219
[OKJR] human gut metagenome; human gut
6
90
+
Tyr
GTA
[ENA]
¢þ
>WENV182846770
OKJR01002393
[OKJR] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182846725
OKJR01000349
[OKJR] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV182846768
OKJR01002301
[OKJR] human gut metagenome; human gut
68
144
+
Asp
GTC
[ENA]
¢þ
>WENV182846713
OKJR01000088
[OKJR] human gut metagenome; human gut
70
145
+
Thr
GGT
[ENA]
¢þ
>WENV182846730
OKJR01000434
[OKJR] human gut metagenome; human gut
73
-1
-
Arg
CCT
[ENA]
¢þ
>WENV182846785
OKJR01002682
[OKJR] human gut metagenome; human gut
75
2
-
Arg
ACG
[ENA]
¢þ
>WENV182846719
OKJR01000208
[OKJR] human gut metagenome; human gut
103
17
-
Leu
CAG
[ENA]
¢þ
>WENV182846745
OKJR01000947
[OKJR] human gut metagenome; human gut
127
52
-
Arg
TCT
[ENA]
¢þ
>WENV182846777
OKJR01002530
[OKJR] human gut metagenome; human gut
133
59
-
Glu
TTC
[ENA]
¢þ
>WENV182846760
OKJR01002012
[OKJR] human gut metagenome; human gut
134
59
-
His
GTG
[ENA]
¢þ
>WENV182846786
OKJR01002713
[OKJR] human gut metagenome; human gut
139
228
+
Ser
GGA
[ENA]
¢þ
>WENV182846769
OKJR01002301
[OKJR] human gut metagenome; human gut
148
223
+
Thr
TGT
[ENA]
¢þ
>WENV182846776
OKJR01002401
[OKJR] human gut metagenome; human gut
152
80
-
Ala
TGC
[ENA]
¢þ
>WENV182846794
OKJR01002885
[OKJR] human gut metagenome; human gut
163
88
-
Ile2
CAT
[ENA]
¢þ
>WENV182846726
OKJR01000349
[OKJR] human gut metagenome; human gut
167
240
+
Glu
TTC
[ENA]
¢þ
>WENV182846784
OKJR01002682
[OKJR] human gut metagenome; human gut
175
90
-
Leu
TAA
[ENA]
¢þ
>WENV182846771
OKJR01002393
[OKJR] human gut metagenome; human gut
176
266
+
Ser
GGA
[ENA]
¢þ
>WENV182846753
OKJR01001537
[OKJR] human gut metagenome; human gut
181
108
-
Gly
CCC
[ENA]
¢þ
>WENV182846759
OKJR01002012
[OKJR] human gut metagenome; human gut
215
139
-
Arg
TCT
[ENA]
¢þ
>WENV182846761
OKJR01002064
[OKJR] human gut metagenome; human gut
236
310
+
Lys
CTT
[ENA]
¢þ
>WENV182846793
OKJR01002885
[OKJR] human gut metagenome; human gut
257
182
-
Met
CAT
[ENA]
¢þ
>WENV182846783
OKJR01002682
[OKJR] human gut metagenome; human gut
262
191
-
Gly
GCC
[ENA]
¢þ
>WENV182846772
OKJR01002393
[OKJR] human gut metagenome; human gut
282
355
+
Glu
TTC
[ENA]
¢þ
>WENV182846766
OKJR01002156
[OKJR] human gut metagenome; human gut
294
219
-
Ala
TGC
[ENA]
¢þ
>WENV182846788
OKJR01002759
[OKJR] human gut metagenome; human gut
297
222
-
fMet
CAT
[ENA]
¢þ
>WENV182846790
OKJR01002824
[OKJR] human gut metagenome; human gut
297
386
+
Ser
GGA
[ENA]
¢þ
>WENV182846767
OKJR01002196
[OKJR] human gut metagenome; human gut
298
214
-
Tyr
GTA
[ENA]
¢þ
>WENV182846731
OKJR01000468
[OKJR] human gut metagenome; human gut
314
389
+
Thr
CGT
[ENA]
¢þ
>WENV182846755
OKJR01001707
[OKJR] human gut metagenome; human gut
322
251
-
Trp
CCA
[ENA]
¢þ
>WENV182846758
OKJR01002012
[OKJR] human gut metagenome; human gut
324
251
-
Gly
TCC
[ENA]
¢þ
>WENV182846782
OKJR01002682
[OKJR] human gut metagenome; human gut
342
267
-
Thr
TGT
[ENA]
¢þ
>WENV182846792
OKJR01002885
[OKJR] human gut metagenome; human gut
353
279
-
Ala
TGC
[ENA]
¢þ
>WENV182846779
OKJR01002564
[OKJR] human gut metagenome; human gut
369
296
-
Ile2
CAT
[ENA]
¢þ
>WENV182846765
OKJR01002156
[OKJR] human gut metagenome; human gut
376
300
-
Ile2
CAT
[ENA]
¢þ
>WENV182846773
OKJR01002393
[OKJR] human gut metagenome; human gut
381
455
+
Val
TAC
[ENA]
¢þ
>WENV182846789
OKJR01002793
[OKJR] human gut metagenome; human gut
387
474
+
Ser
TGA
[ENA]
¢þ
>WENV182846787
OKJR01002759
[OKJR] human gut metagenome; human gut
392
304
-
Leu
TAA
[ENA]
¢þ
>WENV182846757
OKJR01002012
[OKJR] human gut metagenome; human gut
404
329
-
Pro
TGG
[ENA]
¢þ
>WENV182846781
OKJR01002682
[OKJR] human gut metagenome; human gut
431
348
-
Leu
TAG
[ENA]
¢þ
>WENV182846791
OKJR01002885
[OKJR] human gut metagenome; human gut
439
366
-
Pro
TGG
[ENA]
¢þ
>WENV182846774
OKJR01002393
[OKJR] human gut metagenome; human gut
465
540
+
Asp
GTC
[ENA]
¢þ
>WENV182846778
OKJR01002537
[OKJR] human gut metagenome; human gut
497
421
-
Asp
GTC
[ENA]
¢þ
>WENV182846780
OKJR01002682
[OKJR] human gut metagenome; human gut
520
446
-
Lys
TTT
[ENA]
¢þ
>WENV182846752
OKJR01001472
[OKJR] human gut metagenome; human gut
571
497
-
Arg
CCT
[ENA]
¢þ
>WENV182846744
OKJR01000912
[OKJR] human gut metagenome; human gut
585
510
-
Gly
GCC
[ENA]
¢þ
>WENV182846775
OKJR01002393
[OKJR] human gut metagenome; human gut
586
658
+
Phe
GAA
[ENA]
¢þ
>WENV182846764
OKJR01002084
[OKJR] human gut metagenome; human gut
672
599
-
Gly
TCC
[ENA]
¢þ
>WENV182846734
OKJR01000575
[OKJR] human gut metagenome; human gut
690
766
+
Pro
GGG
[ENA]
¢þ
>WENV182846763
OKJR01002084
[OKJR] human gut metagenome; human gut
750
676
-
Gly
GCC
[ENA]
¢þ
>WENV182846762
OKJR01002084
[OKJR] human gut metagenome; human gut
860
777
-
Leu
TAG
[ENA]
¢þ
>WENV182846746
OKJR01000987
[OKJR] human gut metagenome; human gut
1031
1120
+
Ser
CGA
[ENA]
¢þ
>WENV182846756
OKJR01001811
[OKJR] human gut metagenome; human gut
1138
1213
+
Val
TAC
[ENA]
¢þ
>WENV182846743
OKJR01000844
[OKJR] human gut metagenome; human gut
1144
1057
-
Ser
TGA
[ENA]
¢þ
>WENV182846751
OKJR01001413
[OKJR] human gut metagenome; human gut
1380
1305
-
Ile2
CAT
[ENA]
¢þ
>WENV182846737
OKJR01000794
[OKJR] human gut metagenome; human gut
1448
1520
+
Thr
GGT
[ENA]
¢þ
>WENV182846754
OKJR01001562
[OKJR] human gut metagenome; human gut
1492
1417
-
Thr
GGT
[ENA]
¢þ
>WENV182846738
OKJR01000809
[OKJR] human gut metagenome; human gut
1501
1577
+
Met
CAT
[ENA]
¢þ
>WENV182846739
OKJR01000809
[OKJR] human gut metagenome; human gut
1596
1680
+
Leu
TAG
[ENA]
¢þ
>WENV182846750
OKJR01001384
[OKJR] human gut metagenome; human gut
1695
1620
-
Trp
CCA
[ENA]
¢þ
>WENV182846740
OKJR01000809
[OKJR] human gut metagenome; human gut
1711
1785
+
Gln
TTG
[ENA]
¢þ
>WENV182846749
OKJR01001284
[OKJR] human gut metagenome; human gut
1756
1671
-
Leu
TAA
[ENA]
¢þ
>WENV182846741
OKJR01000809
[OKJR] human gut metagenome; human gut
1827
1903
+
Met
CAT
[ENA]
¢þ
>WENV182846748
OKJR01001284
[OKJR] human gut metagenome; human gut
1840
1767
-
Cys
GCA
[ENA]
¢þ
>WENV182846742
OKJR01000809
[OKJR] human gut metagenome; human gut
1908
1982
+
Gln
CTG
[ENA]
¢þ
>WENV182846714
OKJR01000165
[OKJR] human gut metagenome; human gut
2248
2323
+
Phe
GAA
[ENA]
¢þ
>WENV182846727
OKJR01000376
[OKJR] human gut metagenome; human gut
2705
2780
+
Ile2
CAT
[ENA]
¢þ
>WENV182846733
OKJR01000483
[OKJR] human gut metagenome; human gut
2921
2845
-
Arg
ACG
[ENA]
¢þ
>WENV182846732
OKJR01000483
[OKJR] human gut metagenome; human gut
3017
2925
-
Ser
GCT
[ENA]
¢þ
>WENV182846736
OKJR01000644
[OKJR] human gut metagenome; human gut
3561
3655
+
SeC
TCA
[ENA]
¢þ
>WENV182846729
OKJR01000389
[OKJR] human gut metagenome; human gut
3604
3679
+
Gly
GCC
[ENA]
¢þ
>WENV182846735
OKJR01000579
[OKJR] human gut metagenome; human gut
3618
3543
-
Ala
GGC
[ENA]
¢þ
>WENV182846728
OKJR01000388
[OKJR] human gut metagenome; human gut
3620
3706
+
Leu
GAG
[ENA]
¢þ
>WENV182846715
OKJR01000170
[OKJR] human gut metagenome; human gut
3959
4035
+
Arg
TCT
[ENA]
¢þ
>WENV182846721
OKJR01000275
[OKJR] human gut metagenome; human gut
4000
4075
+
Asn
GTT
[ENA]
¢þ
>WENV182846722
OKJR01000291
[OKJR] human gut metagenome; human gut
4127
4198
+
Asn
GTT
[ENA]
¢þ
>WENV182846724
OKJR01000339
[OKJR] human gut metagenome; human gut
4332
4405
+
Arg
CCG
[ENA]
¢þ
>WENV182846718
OKJR01000183
[OKJR] human gut metagenome; human gut
4470
4394
-
fMet
CAT
[ENA]
¢þ
>WENV182846717
OKJR01000183
[OKJR] human gut metagenome; human gut
4611
4535
-
fMet
CAT
[ENA]
¢þ
>WENV182846716
OKJR01000183
[OKJR] human gut metagenome; human gut
4758
4672
-
Leu
GAG
[ENA]
¢þ
>WENV182846723
OKJR01000298
[OKJR] human gut metagenome; human gut
5506
5430
-
Val
GAC
[ENA]
¢þ
>WENV182846720
OKJR01000219
[OKJR] human gut metagenome; human gut
7017
6944
-
Pro
TGG
[ENA]
¢þ
>WENV182846712
OKJR01000004
[OKJR] human gut metagenome; human gut
27405
27494
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK