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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKJZ] human gut metagenome; human gut
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182847487
OKJZ01003561
[OKJZ] human gut metagenome; human gut
61
136
+
Thr
GGT
[ENA]
¢þ
>WENV182847477
OKJZ01002300
[OKJZ] human gut metagenome; human gut
64
148
+
Leu
TAG
[ENA]
¢þ
>WENV182847460
OKJZ01001643
[OKJZ] human gut metagenome; human gut
67
141
+
Val
TAC
[ENA]
¢þ
>WENV182847490
OKJZ01004273
[OKJZ] human gut metagenome; human gut
77
147
+
Cys
GCA
[ENA]
¢þ
>WENV182847482
OKJZ01003071
[OKJZ] human gut metagenome; human gut
87
160
+
Cys
GCA
[ENA]
¢þ
>WENV182847488
OKJZ01004016
[OKJZ] human gut metagenome; human gut
114
30
-
Leu
CAA
[ENA]
¢þ
>WENV182847450
OKJZ01000398
[OKJZ] human gut metagenome; human gut
132
204
+
Ala
TGC
[ENA]
¢þ
>WENV182847461
OKJZ01001643
[OKJZ] human gut metagenome; human gut
146
220
+
Lys
TTT
[ENA]
¢þ
>WENV182847491
OKJZ01004273
[OKJZ] human gut metagenome; human gut
160
245
+
Leu
CAA
[ENA]
¢þ
>WENV182847456
OKJZ01000975
[OKJZ] human gut metagenome; human gut
161
71
-
Ser
GGA
[ENA]
¢þ
>WENV182847451
OKJZ01000671
[OKJZ] human gut metagenome; human gut
163
87
-
fMet
CAT
[ENA]
¢þ
>WENV182847483
OKJZ01003071
[OKJZ] human gut metagenome; human gut
173
259
+
Leu
TAA
[ENA]
¢þ
>WENV182847473
OKJZ01001897
[OKJZ] human gut metagenome; human gut
180
106
-
Gly
GCC
[ENA]
¢þ
>WENV182847478
OKJZ01002300
[OKJZ] human gut metagenome; human gut
183
257
+
Gln
TTG
[ENA]
¢þ
>WENV182847489
OKJZ01004254
[OKJZ] human gut metagenome; human gut
193
107
-
Leu
GAG
[ENA]
¢þ
>WENV182847484
OKJZ01003233
[OKJZ] human gut metagenome; human gut
202
129
-
Gly
CCC
[ENA]
¢þ
>WENV182847495
OKJZ01005246
[OKJZ] human gut metagenome; human gut
232
157
-
Ile2
CAT
[ENA]
¢þ
>WENV182847462
OKJZ01001643
[OKJZ] human gut metagenome; human gut
235
318
+
Leu
TAG
[ENA]
¢þ
>WENV182847493
OKJZ01005039
[OKJZ] human gut metagenome; human gut
254
179
-
Asn
GTT
[ENA]
¢þ
>WENV182847481
OKJZ01002661
[OKJZ] human gut metagenome; human gut
266
176
-
Ser
GCT
[ENA]
¢þ
>WENV182847479
OKJZ01002300
[OKJZ] human gut metagenome; human gut
273
349
+
Met
CAT
[ENA]
¢þ
>WENV182847455
OKJZ01000975
[OKJZ] human gut metagenome; human gut
278
203
-
Asn
GTT
[ENA]
¢þ
>WENV182847463
OKJZ01001643
[OKJZ] human gut metagenome; human gut
324
399
+
Thr
TGT
[ENA]
¢þ
>WENV182847494
OKJZ01005227
[OKJZ] human gut metagenome; human gut
328
252
-
Val
GAC
[ENA]
¢þ
>WENV182847458
OKJZ01001533
[OKJZ] human gut metagenome; human gut
362
438
+
Pro
GGG
[ENA]
¢þ
>WENV182847486
OKJZ01003534
[OKJZ] human gut metagenome; human gut
379
295
-
Tyr
GTA
[ENA]
¢þ
>WENV182847480
OKJZ01002300
[OKJZ] human gut metagenome; human gut
398
472
+
Gln
CTG
[ENA]
¢þ
>WENV182847496
OKJZ01005411
[OKJZ] human gut metagenome; human gut
404
329
-
Lys
TTT
[ENA]
¢þ
>WENV182847464
OKJZ01001643
[OKJZ] human gut metagenome; human gut
404
475
+
Gly
GCC
[ENA]
¢þ
>WENV182847459
OKJZ01001610
[OKJZ] human gut metagenome; human gut
409
322
-
Ser
TGA
[ENA]
¢þ
>WENV182847447
OKJZ01000112
[OKJZ] human gut metagenome; human gut
428
514
+
Leu
CAG
[ENA]
¢þ
>WENV182847476
OKJZ01002292
[OKJZ] human gut metagenome; human gut
433
357
-
Arg
ACG
[ENA]
¢þ
>WENV182847492
OKJZ01004288
[OKJZ] human gut metagenome; human gut
454
525
+
Trp
CCA
[ENA]
¢þ
>WENV182847485
OKJZ01003534
[OKJZ] human gut metagenome; human gut
465
390
-
Thr
TGT
[ENA]
¢þ
>WENV182847465
OKJZ01001643
[OKJZ] human gut metagenome; human gut
491
576
+
Leu
TAA
[ENA]
¢þ
>WENV182847475
OKJZ01002292
[OKJZ] human gut metagenome; human gut
529
437
-
Ser
GCT
[ENA]
¢þ
>WENV182847472
OKJZ01001754
[OKJZ] human gut metagenome; human gut
545
639
+
SeC
TCA
[ENA]
¢þ
>WENV182847448
OKJZ01000112
[OKJZ] human gut metagenome; human gut
557
633
+
Pro
TGG
[ENA]
¢þ
>WENV182847466
OKJZ01001643
[OKJZ] human gut metagenome; human gut
591
664
+
Arg
ACG
[ENA]
¢þ
>WENV182847467
OKJZ01001643
[OKJZ] human gut metagenome; human gut
676
749
+
Pro
TGG
[ENA]
¢þ
>WENV182847474
OKJZ01002199
[OKJZ] human gut metagenome; human gut
700
776
+
Pro
CGG
[ENA]
¢þ
>WENV182847468
OKJZ01001643
[OKJZ] human gut metagenome; human gut
762
836
+
Ala
TGC
[ENA]
¢þ
>WENV182847471
OKJZ01001724
[OKJZ] human gut metagenome; human gut
804
892
+
Ser
TGA
[ENA]
¢þ
>WENV182847469
OKJZ01001643
[OKJZ] human gut metagenome; human gut
857
932
+
Met
CAT
[ENA]
¢þ
>WENV182847452
OKJZ01000873
[OKJZ] human gut metagenome; human gut
909
984
+
Gly
GCC
[ENA]
¢þ
>WENV182847457
OKJZ01001361
[OKJZ] human gut metagenome; human gut
934
1009
+
Ala
GGC
[ENA]
¢þ
>WENV182847470
OKJZ01001643
[OKJZ] human gut metagenome; human gut
951
1026
+
Ile2
CAT
[ENA]
¢þ
>WENV182847453
OKJZ01000897
[OKJZ] human gut metagenome; human gut
1197
1286
+
Ser
CGA
[ENA]
¢þ
>WENV182847454
OKJZ01000931
[OKJZ] human gut metagenome; human gut
1441
1516
+
Phe
GAA
[ENA]
¢þ
>WENV182847449
OKJZ01000163
[OKJZ] human gut metagenome; human gut
2035
2107
+
Thr
GGT
[ENA]
¢þ
>WENV182847446
OKJZ01000083
[OKJZ] human gut metagenome; human gut
2442
2367
-
Arg
TCT
[ENA]
¢þ
>WENV182847445
OKJZ01000031
[OKJZ] human gut metagenome; human gut
3170
3245
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK