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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKKA] human gut metagenome; human gut
HIT:
45 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182847541
OKKA01002578
[OKKA] human gut metagenome; human gut
3
78
+
Ala
GGC
[ENA]
¢þ
>WENV182847530
OKKA01000876
[OKKA] human gut metagenome; human gut
194
269
+
Thr
TGT
[ENA]
¢þ
>WENV182847527
OKKA01000576
[OKKA] human gut metagenome; human gut
221
137
-
Leu
CAA
[ENA]
¢þ
>WENV182847522
OKKA01000353
[OKKA] human gut metagenome; human gut
231
156
-
Asn
GTT
[ENA]
¢þ
>WENV182847529
OKKA01000818
[OKKA] human gut metagenome; human gut
258
183
-
Ile2
CAT
[ENA]
¢þ
>WENV182847536
OKKA01001435
[OKKA] human gut metagenome; human gut
382
306
-
Pro
GGG
[ENA]
¢þ
>WENV182847497
OKKA01000059
[OKKA] human gut metagenome; human gut
383
458
+
Asn
GTT
[ENA]
¢þ
>WENV182847526
OKKA01000484
[OKKA] human gut metagenome; human gut
393
307
-
Leu
TAA
[ENA]
¢þ
>WENV182847540
OKKA01001933
[OKKA] human gut metagenome; human gut
441
528
+
Ser
TGA
[ENA]
¢þ
>WENV182847520
OKKA01000148
[OKKA] human gut metagenome; human gut
458
372
-
Leu
GAG
[ENA]
¢þ
>WENV182847525
OKKA01000484
[OKKA] human gut metagenome; human gut
479
406
-
Cys
GCA
[ENA]
¢þ
>WENV182847498
OKKA01000059
[OKKA] human gut metagenome; human gut
496
586
+
Ser
GGA
[ENA]
¢þ
>WENV182847537
OKKA01001861
[OKKA] human gut metagenome; human gut
556
632
+
Met
CAT
[ENA]
¢þ
>WENV182847499
OKKA01000059
[OKKA] human gut metagenome; human gut
599
672
+
Glu
TTC
[ENA]
¢þ
>WENV182847524
OKKA01000484
[OKKA] human gut metagenome; human gut
608
533
-
Gly
GCC
[ENA]
¢þ
>WENV182847538
OKKA01001861
[OKKA] human gut metagenome; human gut
642
726
+
Leu
TAG
[ENA]
¢þ
>WENV182847500
OKKA01000059
[OKKA] human gut metagenome; human gut
686
760
+
Val
TAC
[ENA]
¢þ
>WENV182847539
OKKA01001861
[OKKA] human gut metagenome; human gut
750
824
+
Gln
TTG
[ENA]
¢þ
>WENV182847501
OKKA01000059
[OKKA] human gut metagenome; human gut
762
836
+
Lys
TTT
[ENA]
¢þ
>WENV182847502
OKKA01000059
[OKKA] human gut metagenome; human gut
842
925
+
Leu
TAG
[ENA]
¢þ
>WENV182847528
OKKA01000794
[OKKA] human gut metagenome; human gut
843
918
+
Thr
CGT
[ENA]
¢þ
>WENV182847534
OKKA01001355
[OKKA] human gut metagenome; human gut
845
921
+
Ile
GAT
[ENA]
¢þ
>WENV182847532
OKKA01000942
[OKKA] human gut metagenome; human gut
869
955
+
Leu
CAG
[ENA]
¢þ
>WENV182847503
OKKA01000059
[OKKA] human gut metagenome; human gut
940
1015
+
Thr
TGT
[ENA]
¢þ
>WENV182847535
OKKA01001355
[OKKA] human gut metagenome; human gut
964
1039
+
Ala
TGC
[ENA]
¢þ
>WENV182847504
OKKA01000059
[OKKA] human gut metagenome; human gut
1025
1096
+
Gly
GCC
[ENA]
¢þ
>WENV182847505
OKKA01000059
[OKKA] human gut metagenome; human gut
1113
1198
+
Leu
TAA
[ENA]
¢þ
>WENV182847506
OKKA01000059
[OKKA] human gut metagenome; human gut
1208
1283
+
Arg
ACG
[ENA]
¢þ
>WENV182847533
OKKA01000976
[OKKA] human gut metagenome; human gut
1222
1146
-
fMet
CAT
[ENA]
¢þ
>WENV182847531
OKKA01000917
[OKKA] human gut metagenome; human gut
1248
1324
+
Pro
CGG
[ENA]
¢þ
>WENV182847507
OKKA01000059
[OKKA] human gut metagenome; human gut
1292
1365
+
Pro
TGG
[ENA]
¢þ
>WENV182847508
OKKA01000059
[OKKA] human gut metagenome; human gut
1385
1457
+
Ala
TGC
[ENA]
¢þ
>WENV182847521
OKKA01000341
[OKKA] human gut metagenome; human gut
1462
1549
+
Ser
GGA
[ENA]
¢þ
>WENV182847509
OKKA01000059
[OKKA] human gut metagenome; human gut
1484
1559
+
Met
CAT
[ENA]
¢þ
>WENV182847510
OKKA01000059
[OKKA] human gut metagenome; human gut
1571
1646
+
Ile2
CAT
[ENA]
¢þ
>WENV182847511
OKKA01000059
[OKKA] human gut metagenome; human gut
1669
1758
+
Ser
TGA
[ENA]
¢þ
>WENV182847512
OKKA01000059
[OKKA] human gut metagenome; human gut
1770
1845
+
fMet
CAT
[ENA]
¢þ
>WENV182847513
OKKA01000059
[OKKA] human gut metagenome; human gut
1862
1936
+
Asp
GTC
[ENA]
¢þ
>WENV182847514
OKKA01000059
[OKKA] human gut metagenome; human gut
1938
2012
+
Phe
GAA
[ENA]
¢þ
>WENV182847523
OKKA01000479
[OKKA] human gut metagenome; human gut
1994
1918
-
Arg
ACG
[ENA]
¢þ
>WENV182847515
OKKA01000059
[OKKA] human gut metagenome; human gut
2016
2086
+
Gly
TCC
[ENA]
¢þ
>WENV182847516
OKKA01000059
[OKKA] human gut metagenome; human gut
2100
2176
+
Ile
GAT
[ENA]
¢þ
>WENV182847517
OKKA01000059
[OKKA] human gut metagenome; human gut
2187
2262
+
Ala
TGC
[ENA]
¢þ
>WENV182847519
OKKA01000082
[OKKA] human gut metagenome; human gut
2225
2150
-
Lys
TTT
[ENA]
¢þ
>WENV182847518
OKKA01000082
[OKKA] human gut metagenome; human gut
2304
2229
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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