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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OKKB] human gut metagenome; human gut
HIT:
134 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182847669
OKKB01001898
[OKKB] human gut metagenome; human gut
65
154
+
Ser
TGA
[ENA]
¢þ
>WENV182847644
OKKB01000255
[OKKB] human gut metagenome; human gut
92
21
-
Met
CAT
[ENA]
¢þ
>WENV182847664
OKKB01000612
[OKKB] human gut metagenome; human gut
127
54
-
Pro
TGG
[ENA]
¢þ
>WENV182847670
OKKB01001898
[OKKB] human gut metagenome; human gut
187
262
+
fMet
CAT
[ENA]
¢þ
>WENV182847663
OKKB01000612
[OKKB] human gut metagenome; human gut
212
139
-
Arg
ACG
[ENA]
¢þ
>WENV182847668
OKKB01001600
[OKKB] human gut metagenome; human gut
272
199
-
Gln
TTG
[ENA]
¢þ
>WENV182847671
OKKB01001898
[OKKB] human gut metagenome; human gut
310
386
+
Asp
GTC
[ENA]
¢þ
>WENV182847662
OKKB01000612
[OKKB] human gut metagenome; human gut
312
227
-
Leu
TAA
[ENA]
¢þ
>WENV182847666
OKKB01001415
[OKKB] human gut metagenome; human gut
322
250
-
Thr
GGT
[ENA]
¢þ
>WENV182847667
OKKB01001600
[OKKB] human gut metagenome; human gut
362
280
-
Tyr
GTA
[ENA]
¢þ
>WENV182847672
OKKB01001898
[OKKB] human gut metagenome; human gut
388
458
+
Gly
TCC
[ENA]
¢þ
>WENV182847673
OKKB01001898
[OKKB] human gut metagenome; human gut
467
542
+
Ile
GAT
[ENA]
¢þ
>WENV182847661
OKKB01000612
[OKKB] human gut metagenome; human gut
478
406
-
Thr
TGT
[ENA]
¢þ
>WENV182847674
OKKB01001898
[OKKB] human gut metagenome; human gut
551
640
+
Ser
GCT
[ENA]
¢þ
>WENV182847660
OKKB01000612
[OKKB] human gut metagenome; human gut
567
484
-
Leu
TAG
[ENA]
¢þ
>WENV182847675
OKKB01001898
[OKKB] human gut metagenome; human gut
654
727
+
Glu
TTC
[ENA]
¢þ
>WENV182847659
OKKB01000612
[OKKB] human gut metagenome; human gut
656
582
-
Lys
TTT
[ENA]
¢þ
>WENV182847658
OKKB01000612
[OKKB] human gut metagenome; human gut
735
661
-
Val
TAC
[ENA]
¢þ
>WENV182847649
OKKB01000415
[OKKB] human gut metagenome; human gut
748
822
+
Ala
AGC
[ENA]
¢þ
>WENV182847665
OKKB01000850
[OKKB] human gut metagenome; human gut
1754
1827
+
Arg
CCG
[ENA]
¢þ
>WENV182847568
OKKB01000015
[OKKB] human gut metagenome; human gut
1766
1696
-
Gly
GCC
[ENA]
¢þ
>WENV182847643
OKKB01000255
[OKKB] human gut metagenome; human gut
2008
1937
-
Asp
GTC
[ENA]
¢þ
>WENV182847647
OKKB01000327
[OKKB] human gut metagenome; human gut
2052
1979
-
Val
CAC
[ENA]
¢þ
>WENV182847580
OKKB01000039
[OKKB] human gut metagenome; human gut
2589
2500
-
Ser
TGA
[ENA]
¢þ
>WENV182847635
OKKB01000246
[OKKB] human gut metagenome; human gut
2641
2565
-
Arg
CCT
[ENA]
¢þ
>WENV182847625
OKKB01000154
[OKKB] human gut metagenome; human gut
2809
2735
-
Arg
TCT
[ENA]
¢þ
>WENV182847653
OKKB01000571
[OKKB] human gut metagenome; human gut
3172
3242
+
Ala
TGC
[ENA]
¢þ
>WENV182847618
OKKB01000133
[OKKB] human gut metagenome; human gut
3361
3433
+
Ala
AGC
[ENA]
¢þ
>WENV182847656
OKKB01000572
[OKKB] human gut metagenome; human gut
3476
3401
-
Ala
TGC
[ENA]
¢þ
>WENV182847655
OKKB01000572
[OKKB] human gut metagenome; human gut
3581
3505
-
Ile
GAT
[ENA]
¢þ
>WENV182847619
OKKB01000138
[OKKB] human gut metagenome; human gut
3583
3658
+
Val
AAC
[ENA]
¢þ
>WENV182847633
OKKB01000232
[OKKB] human gut metagenome; human gut
3592
3518
-
Ala
AGC
[ENA]
¢þ
>WENV182847648
OKKB01000378
[OKKB] human gut metagenome; human gut
3830
3903
+
Asp
GTC
[ENA]
¢þ
>WENV182847654
OKKB01000571
[OKKB] human gut metagenome; human gut
4002
4072
+
Asn
GTT
[ENA]
¢þ
>WENV182847657
OKKB01000612
[OKKB] human gut metagenome; human gut
4122
4050
-
Ala
TGC
[ENA]
¢þ
>WENV182847652
OKKB01000555
[OKKB] human gut metagenome; human gut
4331
4257
-
Lys
TTT
[ENA]
¢þ
>WENV182847630
OKKB01000223
[OKKB] human gut metagenome; human gut
4571
4496
-
Met
CAT
[ENA]
¢þ
>WENV182847620
OKKB01000138
[OKKB] human gut metagenome; human gut
4968
5051
+
Ser
AGA
[ENA]
¢þ
>WENV182847650
OKKB01000555
[OKKB] human gut metagenome; human gut
5006
5087
+
Leu
TAA
[ENA]
¢þ
>WENV182847617
OKKB01000128
[OKKB] human gut metagenome; human gut
5136
5064
-
Gly
TCC
[ENA]
¢þ
>WENV182847651
OKKB01000555
[OKKB] human gut metagenome; human gut
5261
5333
+
Thr
TGT
[ENA]
¢þ
>WENV182847574
OKKB01000023
[OKKB] human gut metagenome; human gut
5385
5455
+
Gly
GCC
[ENA]
¢þ
>WENV182847563
OKKB01000010
[OKKB] human gut metagenome; human gut
6461
6536
+
Phe
GAA
[ENA]
¢þ
>WENV182847642
OKKB01000255
[OKKB] human gut metagenome; human gut
6643
6572
-
Ile2
CAT
[ENA]
¢þ
>WENV182847628
OKKB01000207
[OKKB] human gut metagenome; human gut
7074
7002
-
Gly
TCC
[ENA]
¢þ
>WENV182847588
OKKB01000046
[OKKB] human gut metagenome; human gut
7171
7246
+
His
GTG
[ENA]
¢þ
>WENV182847597
OKKB01000069
[OKKB] human gut metagenome; human gut
8862
8788
-
Arg
TCT
[ENA]
¢þ
>WENV182847547
OKKB01000006
[OKKB] human gut metagenome; human gut
8906
8993
+
Gln
TTG
[ENA]
¢þ
>WENV182847567
OKKB01000013
[OKKB] human gut metagenome; human gut
9620
9536
-
Leu
TAG
[ENA]
¢þ
>WENV182847566
OKKB01000013
[OKKB] human gut metagenome; human gut
9750
9675
-
His
GTG
[ENA]
¢þ
>WENV182847565
OKKB01000013
[OKKB] human gut metagenome; human gut
9878
9802
-
Arg
TCT
[ENA]
¢þ
>WENV182847593
OKKB01000056
[OKKB] human gut metagenome; human gut
10240
10312
+
Thr
AGT
[ENA]
¢þ
>WENV182847646
OKKB01000300
[OKKB] human gut metagenome; human gut
10565
10490
-
Val
AAC
[ENA]
¢þ
>WENV182847629
OKKB01000209
[OKKB] human gut metagenome; human gut
11129
11055
-
Ala
TGC
[ENA]
¢þ
>WENV182847598
OKKB01000076
[OKKB] human gut metagenome; human gut
11565
11494
-
Gln
CTG
[ENA]
¢þ
>WENV182847641
OKKB01000255
[OKKB] human gut metagenome; human gut
12279
12209
-
Phe
GAA
[ENA]
¢þ
>WENV182847640
OKKB01000255
[OKKB] human gut metagenome; human gut
12351
12277
-
Sup
TCA
[ENA]
¢þ
>WENV182847639
OKKB01000255
[OKKB] human gut metagenome; human gut
12512
12442
-
Arg
TCT
[ENA]
¢þ
>WENV182847584
OKKB01000041
[OKKB] human gut metagenome; human gut
12858
12785
-
Asp
GTC
[ENA]
¢þ
>WENV182847634
OKKB01000245
[OKKB] human gut metagenome; human gut
13416
13341
-
Val
AAC
[ENA]
¢þ
>WENV182847609
OKKB01000109
[OKKB] human gut metagenome; human gut
13634
13708
+
Lys
TTT
[ENA]
¢þ
>WENV182847621
OKKB01000138
[OKKB] human gut metagenome; human gut
14163
14082
-
Ser
AGA
[ENA]
¢þ
>WENV182847582
OKKB01000041
[OKKB] human gut metagenome; human gut
14312
14385
+
Asp
GTC
[ENA]
¢þ
>WENV182847645
OKKB01000300
[OKKB] human gut metagenome; human gut
14659
14585
-
Lys
TTT
[ENA]
¢þ
>WENV182847583
OKKB01000041
[OKKB] human gut metagenome; human gut
15056
15126
+
Gly
GCC
[ENA]
¢þ
>WENV182847569
OKKB01000018
[OKKB] human gut metagenome; human gut
15085
15013
-
Ala
AGC
[ENA]
¢þ
>WENV182847601
OKKB01000082
[OKKB] human gut metagenome; human gut
17241
17167
-
Ala
AGC
[ENA]
¢þ
>WENV182847578
OKKB01000025
[OKKB] human gut metagenome; human gut
17621
17707
+
Leu
CAA
[ENA]
¢þ
>WENV182847610
OKKB01000114
[OKKB] human gut metagenome; human gut
18394
18319
-
Thr
CGT
[ENA]
¢þ
>WENV182847589
OKKB01000046
[OKKB] human gut metagenome; human gut
18531
18607
+
Asp
GTC
[ENA]
¢þ
>WENV182847623
OKKB01000147
[OKKB] human gut metagenome; human gut
19060
18985
-
Gly
TCC
[ENA]
¢þ
>WENV182847622
OKKB01000141
[OKKB] human gut metagenome; human gut
19279
19193
-
Ile
AAT
[ENA]
¢þ
>WENV182847636
OKKB01000255
[OKKB] human gut metagenome; human gut
19326
19398
+
Gly
TCC
[ENA]
¢þ
>WENV182847637
OKKB01000255
[OKKB] human gut metagenome; human gut
19560
19634
+
Pro
TGG
[ENA]
¢þ
>WENV182847626
OKKB01000168
[OKKB] human gut metagenome; human gut
19608
19694
+
Ile
AAT
[ENA]
¢þ
>WENV182847631
OKKB01000228
[OKKB] human gut metagenome; human gut
20161
20231
+
Gly
CCC
[ENA]
¢þ
>WENV182847638
OKKB01000255
[OKKB] human gut metagenome; human gut
20768
20840
+
Ile
GAT
[ENA]
¢þ
>WENV182847624
OKKB01000154
[OKKB] human gut metagenome; human gut
22958
22884
-
Arg
TCT
[ENA]
¢þ
>WENV182847632
OKKB01000229
[OKKB] human gut metagenome; human gut
24869
24798
-
Glu
CTC
[ENA]
¢þ
>WENV182847627
OKKB01000189
[OKKB] human gut metagenome; human gut
26085
25990
-
SeC
TCA
[ENA]
¢þ
>WENV182847604
OKKB01000090
[OKKB] human gut metagenome; human gut
26755
26660
-
Arg
ACG
[ENA]
¢þ
>WENV182847542
OKKB01000001
[OKKB] human gut metagenome; human gut
27552
27641
+
Ser
CGA
[ENA]
¢þ
>WENV182847585
OKKB01000042
[OKKB] human gut metagenome; human gut
28100
28185
+
Leu
GAG
[ENA]
¢þ
>WENV182847586
OKKB01000042
[OKKB] human gut metagenome; human gut
28276
28352
+
fMet
CAT
[ENA]
¢þ
>WENV182847564
OKKB01000010
[OKKB] human gut metagenome; human gut
29681
29756
+
Thr
TGT
[ENA]
¢þ
>WENV182847581
OKKB01000040
[OKKB] human gut metagenome; human gut
31786
31712
-
Arg
TCT
[ENA]
¢þ
>WENV182847590
OKKB01000049
[OKKB] human gut metagenome; human gut
32503
32578
+
Gly
GCC
[ENA]
¢þ
>WENV182847600
OKKB01000080
[OKKB] human gut metagenome; human gut
35576
35648
+
Thr
AGT
[ENA]
¢þ
>WENV182847591
OKKB01000049
[OKKB] human gut metagenome; human gut
37126
37199
+
Cys
GCA
[ENA]
¢þ
>WENV182847572
OKKB01000019
[OKKB] human gut metagenome; human gut
38353
38278
-
Lys
TTT
[ENA]
¢þ
>WENV182847571
OKKB01000019
[OKKB] human gut metagenome; human gut
38440
38364
-
Pro
TGG
[ENA]
¢þ
>WENV182847570
OKKB01000019
[OKKB] human gut metagenome; human gut
38525
38450
-
Asn
GTT
[ENA]
¢þ
>WENV182847573
OKKB01000020
[OKKB] human gut metagenome; human gut
39461
39388
-
Gly
CCC
[ENA]
¢þ
>WENV182847587
OKKB01000045
[OKKB] human gut metagenome; human gut
39673
39747
+
Met
CAT
[ENA]
¢þ
>WENV182847615
OKKB01000118
[OKKB] human gut metagenome; human gut
39685
39759
+
Ala
TGC
[ENA]
¢þ
>WENV182847557
OKKB01000008
[OKKB] human gut metagenome; human gut
43900
43811
-
Ser
GGA
[ENA]
¢þ
>WENV182847549
OKKB01000006
[OKKB] human gut metagenome; human gut
43902
43830
-
Thr
AGT
[ENA]
¢þ
>WENV182847616
OKKB01000119
[OKKB] human gut metagenome; human gut
45092
45175
+
Ser
AGA
[ENA]
¢þ
>WENV182847608
OKKB01000105
[OKKB] human gut metagenome; human gut
45212
45137
-
Asn
GTT
[ENA]
¢þ
>WENV182847614
OKKB01000115
[OKKB] human gut metagenome; human gut
46435
46360
-
Trp
CCA
[ENA]
¢þ
>WENV182847613
OKKB01000115
[OKKB] human gut metagenome; human gut
47844
47769
-
Thr
GGT
[ENA]
¢þ
>WENV182847612
OKKB01000115
[OKKB] human gut metagenome; human gut
47937
47864
-
Gly
TCC
[ENA]
¢þ
>WENV182847611
OKKB01000115
[OKKB] human gut metagenome; human gut
48048
47964
-
Tyr
GTA
[ENA]
¢þ
>WENV182847605
OKKB01000091
[OKKB] human gut metagenome; human gut
48649
48723
+
Gln
TTG
[ENA]
¢þ
>WENV182847596
OKKB01000060
[OKKB] human gut metagenome; human gut
49581
49656
+
Val
AAC
[ENA]
¢þ
>WENV182847592
OKKB01000049
[OKKB] human gut metagenome; human gut
49749
49835
+
Leu
TAA
[ENA]
¢þ
>WENV182847602
OKKB01000083
[OKKB] human gut metagenome; human gut
51284
51370
+
Leu
CAG
[ENA]
¢þ
>WENV182847603
OKKB01000083
[OKKB] human gut metagenome; human gut
51500
51586
+
Leu
CAG
[ENA]
¢þ
>WENV182847606
OKKB01000091
[OKKB] human gut metagenome; human gut
52397
52473
+
Met
CAT
[ENA]
¢þ
>WENV182847607
OKKB01000105
[OKKB] human gut metagenome; human gut
54011
54086
+
Ala
GGC
[ENA]
¢þ
>WENV182847579
OKKB01000035
[OKKB] human gut metagenome; human gut
54556
54629
+
Thr
TGT
[ENA]
¢þ
>WENV182847599
OKKB01000079
[OKKB] human gut metagenome; human gut
56879
56803
-
Arg
CCG
[ENA]
¢þ
>WENV182847548
OKKB01000006
[OKKB] human gut metagenome; human gut
59169
59097
-
Gly
GCC
[ENA]
¢þ
>WENV182847595
OKKB01000057
[OKKB] human gut metagenome; human gut
73225
73144
-
Ser
TGA
[ENA]
¢þ
>WENV182847551
OKKB01000007
[OKKB] human gut metagenome; human gut
73688
73612
-
Asp
GTC
[ENA]
¢þ
>WENV182847550
OKKB01000007
[OKKB] human gut metagenome; human gut
73780
73705
-
Val
TAC
[ENA]
¢þ
>WENV182847577
OKKB01000023
[OKKB] human gut metagenome; human gut
75262
75177
-
Ile
AAT
[ENA]
¢þ
>WENV182847552
OKKB01000008
[OKKB] human gut metagenome; human gut
76398
76473
+
Glu
TTC
[ENA]
¢þ
>WENV182847553
OKKB01000008
[OKKB] human gut metagenome; human gut
76476
76551
+
Gly
GCC
[ENA]
¢þ
>WENV182847554
OKKB01000008
[OKKB] human gut metagenome; human gut
76636
76711
+
Gly
GCC
[ENA]
¢þ
>WENV182847594
OKKB01000057
[OKKB] human gut metagenome; human gut
79727
79800
+
Thr
TGT
[ENA]
¢þ
>WENV182847558
OKKB01000009
[OKKB] human gut metagenome; human gut
91023
91113
+
Ser
GCT
[ENA]
¢þ
>WENV182847545
OKKB01000003
[OKKB] human gut metagenome; human gut
91180
91256
+
Ile2
CAT
[ENA]
¢þ
>WENV182847559
OKKB01000009
[OKKB] human gut metagenome; human gut
91231
91307
+
Arg
ACG
[ENA]
¢þ
>WENV182847560
OKKB01000009
[OKKB] human gut metagenome; human gut
91419
91495
+
Arg
ACG
[ENA]
¢þ
>WENV182847576
OKKB01000023
[OKKB] human gut metagenome; human gut
99750
99676
-
Lys
TTT
[ENA]
¢þ
>WENV182847575
OKKB01000023
[OKKB] human gut metagenome; human gut
100677
100751
+
Lys
TTT
[ENA]
¢þ
>WENV182847562
OKKB01000009
[OKKB] human gut metagenome; human gut
107566
107490
-
fMet
CAT
[ENA]
¢þ
>WENV182847555
OKKB01000008
[OKKB] human gut metagenome; human gut
121654
121730
+
Val
GAC
[ENA]
¢þ
>WENV182847546
OKKB01000004
[OKKB] human gut metagenome; human gut
133101
133177
+
Pro
CGG
[ENA]
¢þ
>WENV182847556
OKKB01000008
[OKKB] human gut metagenome; human gut
155796
155872
+
Pro
GGG
[ENA]
¢þ
>WENV182847561
OKKB01000009
[OKKB] human gut metagenome; human gut
160122
160197
+
Lys
TTT
[ENA]
¢þ
>WENV182847544
OKKB01000002
[OKKB] human gut metagenome; human gut
192200
192129
-
Met
CAT
[ENA]
¢þ
>WENV182847543
OKKB01000002
[OKKB] human gut metagenome; human gut
213337
213411
+
Ala
AGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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