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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKKJ] human gut metagenome; human gut
HIT:
126 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182848728
OKKJ01000530
[OKKJ] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182848703
OKKJ01000302
[OKKJ] human gut metagenome; human gut
71
147
+
Val
GAC
[ENA]
¢þ
>WENV182848647
OKKJ01000088
[OKKJ] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182848722
OKKJ01000398
[OKKJ] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182848729
OKKJ01000530
[OKKJ] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182848704
OKKJ01000302
[OKKJ] human gut metagenome; human gut
152
228
+
Val
GAC
[ENA]
¢þ
>WENV182848748
OKKJ01000681
[OKKJ] human gut metagenome; human gut
166
92
-
Gln
TTG
[ENA]
¢þ
>WENV182848717
OKKJ01000390
[OKKJ] human gut metagenome; human gut
171
85
-
Leu
CAG
[ENA]
¢þ
>WENV182848668
OKKJ01000163
[OKKJ] human gut metagenome; human gut
198
112
-
Leu
GAG
[ENA]
¢þ
>WENV182848648
OKKJ01000088
[OKKJ] human gut metagenome; human gut
235
310
+
Trp
CCA
[ENA]
¢þ
>WENV182848730
OKKJ01000530
[OKKJ] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182848747
OKKJ01000681
[OKKJ] human gut metagenome; human gut
274
190
-
Leu
TAG
[ENA]
¢þ
>WENV182848725
OKKJ01000491
[OKKJ] human gut metagenome; human gut
296
388
+
Ser
GGA
[ENA]
¢þ
>WENV182848745
OKKJ01000625
[OKKJ] human gut metagenome; human gut
304
378
+
Lys
CTT
[ENA]
¢þ
>WENV182848731
OKKJ01000530
[OKKJ] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182848721
OKKJ01000398
[OKKJ] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182848746
OKKJ01000681
[OKKJ] human gut metagenome; human gut
360
284
-
Met
CAT
[ENA]
¢þ
>WENV182848732
OKKJ01000530
[OKKJ] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182848720
OKKJ01000398
[OKKJ] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182848674
OKKJ01000172
[OKKJ] human gut metagenome; human gut
444
368
-
Met
CAT
[ENA]
¢þ
>WENV182848715
OKKJ01000362
[OKKJ] human gut metagenome; human gut
478
402
-
Arg
TCT
[ENA]
¢þ
>WENV182848733
OKKJ01000530
[OKKJ] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182848673
OKKJ01000172
[OKKJ] human gut metagenome; human gut
521
446
-
Thr
GGT
[ENA]
¢þ
>WENV182848734
OKKJ01000530
[OKKJ] human gut metagenome; human gut
589
662
+
Pro
TGG
[ENA]
¢þ
>WENV182848672
OKKJ01000172
[OKKJ] human gut metagenome; human gut
617
542
-
fMet
CAT
[ENA]
¢þ
>WENV182848735
OKKJ01000530
[OKKJ] human gut metagenome; human gut
675
749
+
Ala
TGC
[ENA]
¢þ
>WENV182848671
OKKJ01000172
[OKKJ] human gut metagenome; human gut
707
623
-
Tyr
GTA
[ENA]
¢þ
>WENV182848736
OKKJ01000530
[OKKJ] human gut metagenome; human gut
770
845
+
Met
CAT
[ENA]
¢þ
>WENV182848670
OKKJ01000172
[OKKJ] human gut metagenome; human gut
786
711
-
Thr
TGT
[ENA]
¢þ
>WENV182848744
OKKJ01000592
[OKKJ] human gut metagenome; human gut
801
727
-
Gln
CTG
[ENA]
¢þ
>WENV182848737
OKKJ01000530
[OKKJ] human gut metagenome; human gut
864
939
+
Ile2
CAT
[ENA]
¢þ
>WENV182848743
OKKJ01000592
[OKKJ] human gut metagenome; human gut
952
878
-
Gln
CTG
[ENA]
¢þ
>WENV182848738
OKKJ01000530
[OKKJ] human gut metagenome; human gut
972
1061
+
Ser
TGA
[ENA]
¢þ
>WENV182848739
OKKJ01000530
[OKKJ] human gut metagenome; human gut
1094
1169
+
fMet
CAT
[ENA]
¢þ
>WENV182848645
OKKJ01000053
[OKKJ] human gut metagenome; human gut
1128
1041
-
Ser
GGA
[ENA]
¢þ
>WENV182848740
OKKJ01000530
[OKKJ] human gut metagenome; human gut
1207
1283
+
Asp
GTC
[ENA]
¢þ
>WENV182848741
OKKJ01000530
[OKKJ] human gut metagenome; human gut
1285
1355
+
Gly
TCC
[ENA]
¢þ
>WENV182848727
OKKJ01000525
[OKKJ] human gut metagenome; human gut
1288
1213
-
Lys
CTT
[ENA]
¢þ
>WENV182848742
OKKJ01000530
[OKKJ] human gut metagenome; human gut
1364
1439
+
Ile
GAT
[ENA]
¢þ
>WENV182848724
OKKJ01000425
[OKKJ] human gut metagenome; human gut
1798
1722
-
Pro
GGG
[ENA]
¢þ
>WENV182848726
OKKJ01000493
[OKKJ] human gut metagenome; human gut
1979
2054
+
Glu
CTC
[ENA]
¢þ
>WENV182848690
OKKJ01000195
[OKKJ] human gut metagenome; human gut
2283
2359
+
Arg
CCT
[ENA]
¢þ
>WENV182848689
OKKJ01000188
[OKKJ] human gut metagenome; human gut
2439
2366
-
Gly
TCC
[ENA]
¢þ
>WENV182848688
OKKJ01000188
[OKKJ] human gut metagenome; human gut
2519
2443
-
Pro
CGG
[ENA]
¢þ
>WENV182848708
OKKJ01000316
[OKKJ] human gut metagenome; human gut
2972
3048
+
Arg
CCG
[ENA]
¢þ
>WENV182848709
OKKJ01000316
[OKKJ] human gut metagenome; human gut
3104
3179
+
His
GTG
[ENA]
¢þ
>WENV182848710
OKKJ01000316
[OKKJ] human gut metagenome; human gut
3203
3289
+
Leu
CAG
[ENA]
¢þ
>WENV182848711
OKKJ01000316
[OKKJ] human gut metagenome; human gut
3332
3408
+
Pro
TGG
[ENA]
¢þ
>WENV182848723
OKKJ01000410
[OKKJ] human gut metagenome; human gut
3589
3665
+
Val
GAC
[ENA]
¢þ
>WENV182848697
OKKJ01000206
[OKKJ] human gut metagenome; human gut
3819
3744
-
Lys
TTT
[ENA]
¢þ
>WENV182848696
OKKJ01000206
[OKKJ] human gut metagenome; human gut
3899
3824
-
Val
TAC
[ENA]
¢þ
>WENV182848718
OKKJ01000392
[OKKJ] human gut metagenome; human gut
3945
4037
+
Ser
GCT
[ENA]
¢þ
>WENV182848695
OKKJ01000206
[OKKJ] human gut metagenome; human gut
4021
3946
-
Val
TAC
[ENA]
¢þ
>WENV182848719
OKKJ01000392
[OKKJ] human gut metagenome; human gut
4042
4118
+
Arg
ACG
[ENA]
¢þ
>WENV182848716
OKKJ01000370
[OKKJ] human gut metagenome; human gut
4210
4285
+
Phe
GAA
[ENA]
¢þ
>WENV182848626
OKKJ01000011
[OKKJ] human gut metagenome; human gut
4480
4405
-
Arg
TCT
[ENA]
¢þ
>WENV182848714
OKKJ01000325
[OKKJ] human gut metagenome; human gut
4913
4837
-
Arg
ACG
[ENA]
¢þ
>WENV182848712
OKKJ01000323
[OKKJ] human gut metagenome; human gut
5355
5430
+
His
GTG
[ENA]
¢þ
>WENV182848713
OKKJ01000323
[OKKJ] human gut metagenome; human gut
5447
5520
+
Gln
TTG
[ENA]
¢þ
>WENV182848707
OKKJ01000306
[OKKJ] human gut metagenome; human gut
5485
5559
+
Ile2
CAT
[ENA]
¢þ
>WENV182848693
OKKJ01000206
[OKKJ] human gut metagenome; human gut
6723
6798
+
Ala
GGC
[ENA]
¢þ
>WENV182848694
OKKJ01000206
[OKKJ] human gut metagenome; human gut
6840
6915
+
Ala
GGC
[ENA]
¢þ
>WENV182848706
OKKJ01000305
[OKKJ] human gut metagenome; human gut
7046
6958
-
Ser
CGA
[ENA]
¢þ
>WENV182848705
OKKJ01000303
[OKKJ] human gut metagenome; human gut
7617
7543
-
Arg
CCG
[ENA]
¢þ
>WENV182848675
OKKJ01000174
[OKKJ] human gut metagenome; human gut
8771
8845
+
Gly
GCC
[ENA]
¢þ
>WENV182848676
OKKJ01000174
[OKKJ] human gut metagenome; human gut
8862
8937
+
Asn
GTT
[ENA]
¢þ
>WENV182848677
OKKJ01000174
[OKKJ] human gut metagenome; human gut
8939
9013
+
Gln
CTG
[ENA]
¢þ
>WENV182848678
OKKJ01000174
[OKKJ] human gut metagenome; human gut
9019
9094
+
Lys
TTT
[ENA]
¢þ
>WENV182848679
OKKJ01000174
[OKKJ] human gut metagenome; human gut
9098
9172
+
Glu
TTC
[ENA]
¢þ
>WENV182848680
OKKJ01000174
[OKKJ] human gut metagenome; human gut
9180
9255
+
Val
TAC
[ENA]
¢þ
>WENV182848681
OKKJ01000174
[OKKJ] human gut metagenome; human gut
9258
9334
+
Asp
GTC
[ENA]
¢þ
>WENV182848682
OKKJ01000174
[OKKJ] human gut metagenome; human gut
9339
9414
+
Phe
GAA
[ENA]
¢þ
>WENV182848683
OKKJ01000174
[OKKJ] human gut metagenome; human gut
9424
9510
+
Leu
GAG
[ENA]
¢þ
>WENV182848684
OKKJ01000174
[OKKJ] human gut metagenome; human gut
9540
9625
+
Leu
CAG
[ENA]
¢þ
>WENV182848654
OKKJ01000144
[OKKJ] human gut metagenome; human gut
9863
9957
+
SeC
TCA
[ENA]
¢þ
>WENV182848702
OKKJ01000259
[OKKJ] human gut metagenome; human gut
10123
10194
+
Trp
CCA
[ENA]
¢þ
>WENV182848650
OKKJ01000101
[OKKJ] human gut metagenome; human gut
10216
10292
+
Pro
GGG
[ENA]
¢þ
>WENV182848691
OKKJ01000200
[OKKJ] human gut metagenome; human gut
10635
10711
+
fMet
CAT
[ENA]
¢þ
>WENV182848692
OKKJ01000200
[OKKJ] human gut metagenome; human gut
10744
10820
+
fMet
CAT
[ENA]
¢þ
>WENV182848652
OKKJ01000122
[OKKJ] human gut metagenome; human gut
10923
11013
+
Ser
GCT
[ENA]
¢þ
>WENV182848701
OKKJ01000236
[OKKJ] human gut metagenome; human gut
11862
11774
-
Leu
TAA
[ENA]
¢þ
>WENV182848700
OKKJ01000236
[OKKJ] human gut metagenome; human gut
11945
11872
-
Cys
GCA
[ENA]
¢þ
>WENV182848699
OKKJ01000236
[OKKJ] human gut metagenome; human gut
12024
11950
-
Gly
GCC
[ENA]
¢þ
>WENV182848641
OKKJ01000045
[OKKJ] human gut metagenome; human gut
12347
12258
-
Ser
CGA
[ENA]
¢þ
>WENV182848687
OKKJ01000188
[OKKJ] human gut metagenome; human gut
13027
13102
+
Thr
CGT
[ENA]
¢þ
>WENV182848698
OKKJ01000220
[OKKJ] human gut metagenome; human gut
13425
13501
+
Pro
CGG
[ENA]
¢þ
>WENV182848685
OKKJ01000178
[OKKJ] human gut metagenome; human gut
14453
14380
-
Gly
CCC
[ENA]
¢þ
>WENV182848656
OKKJ01000160
[OKKJ] human gut metagenome; human gut
14929
15003
+
Arg
CCT
[ENA]
¢þ
>WENV182848686
OKKJ01000182
[OKKJ] human gut metagenome; human gut
15719
15644
-
Ile2
CAT
[ENA]
¢þ
>WENV182848653
OKKJ01000139
[OKKJ] human gut metagenome; human gut
17322
17235
-
Ser
TGA
[ENA]
¢þ
>WENV182848669
OKKJ01000167
[OKKJ] human gut metagenome; human gut
17416
17327
-
Ser
TGA
[ENA]
¢þ
>WENV182848649
OKKJ01000098
[OKKJ] human gut metagenome; human gut
18093
18008
-
Leu
CAA
[ENA]
¢þ
>WENV182848667
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18330
18245
-
Leu
CAA
[ENA]
¢þ
>WENV182848666
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18413
18343
-
Cys
GCA
[ENA]
¢þ
>WENV182848665
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18511
18438
-
Gln
TTG
[ENA]
¢þ
>WENV182848655
OKKJ01000149
[OKKJ] human gut metagenome; human gut
18591
18665
+
Gly
TCC
[ENA]
¢þ
>WENV182848664
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18597
18524
-
His
GTG
[ENA]
¢þ
>WENV182848663
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18707
18634
-
Trp
CCA
[ENA]
¢þ
>WENV182848662
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18793
18711
-
Tyr
GTA
[ENA]
¢þ
>WENV182848661
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18870
18798
-
Phe
GAA
[ENA]
¢þ
>WENV182848660
OKKJ01000161
[OKKJ] human gut metagenome; human gut
18991
18916
-
Asp
GTC
[ENA]
¢þ
>WENV182848659
OKKJ01000161
[OKKJ] human gut metagenome; human gut
19075
19001
-
Val
TAC
[ENA]
¢þ
>WENV182848658
OKKJ01000161
[OKKJ] human gut metagenome; human gut
19174
19101
-
Glu
TTC
[ENA]
¢þ
>WENV182848657
OKKJ01000161
[OKKJ] human gut metagenome; human gut
19280
19190
-
Ser
GGA
[ENA]
¢þ
>WENV182848639
OKKJ01000033
[OKKJ] human gut metagenome; human gut
22860
22785
-
Asn
GTT
[ENA]
¢þ
>WENV182848651
OKKJ01000118
[OKKJ] human gut metagenome; human gut
23881
23964
+
Leu
TAG
[ENA]
¢þ
>WENV182848635
OKKJ01000033
[OKKJ] human gut metagenome; human gut
24617
24692
+
Asn
GTT
[ENA]
¢þ
>WENV182848630
OKKJ01000024
[OKKJ] human gut metagenome; human gut
30213
30285
+
Thr
GGT
[ENA]
¢þ
>WENV182848644
OKKJ01000049
[OKKJ] human gut metagenome; human gut
32923
32998
+
Phe
GAA
[ENA]
¢þ
>WENV182848638
OKKJ01000033
[OKKJ] human gut metagenome; human gut
33520
33445
-
Asn
GTT
[ENA]
¢þ
>WENV182848646
OKKJ01000069
[OKKJ] human gut metagenome; human gut
34651
34724
+
Arg
CCG
[ENA]
¢þ
>WENV182848637
OKKJ01000033
[OKKJ] human gut metagenome; human gut
37010
36935
-
Asn
GTT
[ENA]
¢þ
>WENV182848636
OKKJ01000033
[OKKJ] human gut metagenome; human gut
38002
38091
+
Ser
CGA
[ENA]
¢þ
>WENV182848633
OKKJ01000032
[OKKJ] human gut metagenome; human gut
39434
39520
+
Leu
GAG
[ENA]
¢þ
>WENV182848634
OKKJ01000032
[OKKJ] human gut metagenome; human gut
43467
43543
+
fMet
CAT
[ENA]
¢þ
>WENV182848642
OKKJ01000048
[OKKJ] human gut metagenome; human gut
44718
44793
+
Pro
TGG
[ENA]
¢þ
>WENV182848643
OKKJ01000048
[OKKJ] human gut metagenome; human gut
44801
44877
+
Arg
TCT
[ENA]
¢þ
>WENV182848640
OKKJ01000045
[OKKJ] human gut metagenome; human gut
46582
46507
-
Asn
GTT
[ENA]
¢þ
>WENV182848632
OKKJ01000028
[OKKJ] human gut metagenome; human gut
49876
49801
-
Thr
CGT
[ENA]
¢þ
>WENV182848631
OKKJ01000026
[OKKJ] human gut metagenome; human gut
52292
52376
+
Leu
CAA
[ENA]
¢þ
>WENV182848625
OKKJ01000011
[OKKJ] human gut metagenome; human gut
53819
53894
+
Arg
CCT
[ENA]
¢þ
>WENV182848629
OKKJ01000016
[OKKJ] human gut metagenome; human gut
66726
66640
-
Leu
TAA
[ENA]
¢þ
>WENV182848628
OKKJ01000016
[OKKJ] human gut metagenome; human gut
66813
66740
-
Cys
GCA
[ENA]
¢þ
>WENV182848627
OKKJ01000016
[OKKJ] human gut metagenome; human gut
66929
66854
-
Gly
GCC
[ENA]
¢þ
>WENV182848623
OKKJ01000001
[OKKJ] human gut metagenome; human gut
67338
67411
+
Gly
CCC
[ENA]
¢þ
>WENV182848624
OKKJ01000002
[OKKJ] human gut metagenome; human gut
100018
100090
+
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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