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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKKN] human gut metagenome; human gut
HIT:
151 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182849102
OKKN01000458
[OKKN] human gut metagenome; human gut
2
76
+
Arg
CCT
[ENA]
¢þ
>WENV182849134
OKKN01005932
[OKKN] human gut metagenome; human gut
43
132
+
Ser
GGA
[ENA]
¢þ
>WENV182849127
OKKN01001643
[OKKN] human gut metagenome; human gut
50
124
+
Lys
CTT
[ENA]
¢þ
>WENV182849109
OKKN01000662
[OKKN] human gut metagenome; human gut
95
185
+
Ser
GGA
[ENA]
¢þ
>WENV182849128
OKKN01002662
[OKKN] human gut metagenome; human gut
99
172
+
Ile2
CAT
[ENA]
¢þ
>WENV182849112
OKKN01000802
[OKKN] human gut metagenome; human gut
103
178
+
Trp
CCA
[ENA]
¢þ
>WENV182849081
OKKN01000301
[OKKN] human gut metagenome; human gut
139
64
-
Lys
TTT
[ENA]
¢þ
>WENV182849122
OKKN01000985
[OKKN] human gut metagenome; human gut
159
243
+
Leu
CAA
[ENA]
¢þ
>WENV182849110
OKKN01000662
[OKKN] human gut metagenome; human gut
201
274
+
Glu
TTC
[ENA]
¢þ
>WENV182849080
OKKN01000301
[OKKN] human gut metagenome; human gut
217
143
-
Gln
TTG
[ENA]
¢þ
>WENV182849079
OKKN01000301
[OKKN] human gut metagenome; human gut
298
223
-
His
GTG
[ENA]
¢þ
>WENV182849131
OKKN01004921
[OKKN] human gut metagenome; human gut
343
417
+
Val
TAC
[ENA]
¢þ
>WENV182849078
OKKN01000301
[OKKN] human gut metagenome; human gut
381
306
-
Lys
CTT
[ENA]
¢þ
>WENV182849132
OKKN01004921
[OKKN] human gut metagenome; human gut
419
493
+
Lys
TTT
[ENA]
¢þ
>WENV182849043
OKKN01000167
[OKKN] human gut metagenome; human gut
437
512
+
Trp
CCA
[ENA]
¢þ
>WENV182849077
OKKN01000301
[OKKN] human gut metagenome; human gut
463
387
-
Arg
TCT
[ENA]
¢þ
>WENV182849133
OKKN01004921
[OKKN] human gut metagenome; human gut
501
584
+
Leu
TAG
[ENA]
¢þ
>WENV182849130
OKKN01004862
[OKKN] human gut metagenome; human gut
518
593
+
Phe
GAA
[ENA]
¢þ
>WENV182849076
OKKN01000301
[OKKN] human gut metagenome; human gut
547
474
-
Gly
TCC
[ENA]
¢þ
>WENV182849118
OKKN01000861
[OKKN] human gut metagenome; human gut
604
529
-
Ile2
CAT
[ENA]
¢þ
>WENV182849090
OKKN01000375
[OKKN] human gut metagenome; human gut
611
685
+
Val
TAC
[ENA]
¢þ
>WENV182849051
OKKN01000242
[OKKN] human gut metagenome; human gut
620
696
+
Asp
GTC
[ENA]
¢þ
>WENV182849044
OKKN01000167
[OKKN] human gut metagenome; human gut
625
701
+
Arg
ACG
[ENA]
¢þ
>WENV182849075
OKKN01000301
[OKKN] human gut metagenome; human gut
628
554
-
Gly
GCC
[ENA]
¢þ
>WENV182849091
OKKN01000375
[OKKN] human gut metagenome; human gut
690
764
+
Lys
TTT
[ENA]
¢þ
>WENV182849129
OKKN01002862
[OKKN] human gut metagenome; human gut
697
772
+
Glu
TTC
[ENA]
¢þ
>WENV182849074
OKKN01000301
[OKKN] human gut metagenome; human gut
715
632
-
Leu
TAG
[ENA]
¢þ
>WENV182849049
OKKN01000228
[OKKN] human gut metagenome; human gut
740
667
-
Arg
CCG
[ENA]
¢þ
>WENV182849125
OKKN01001310
[OKKN] human gut metagenome; human gut
749
677
-
Asn
GTT
[ENA]
¢þ
>WENV182849123
OKKN01001075
[OKKN] human gut metagenome; human gut
772
859
+
Ser
CGA
[ENA]
¢þ
>WENV182849092
OKKN01000375
[OKKN] human gut metagenome; human gut
779
862
+
Leu
TAG
[ENA]
¢þ
>WENV182849116
OKKN01000828
[OKKN] human gut metagenome; human gut
794
721
-
Gly
CCC
[ENA]
¢þ
>WENV182849073
OKKN01000301
[OKKN] human gut metagenome; human gut
810
726
-
Tyr
GTA
[ENA]
¢þ
>WENV182849093
OKKN01000375
[OKKN] human gut metagenome; human gut
868
943
+
Thr
TGT
[ENA]
¢þ
>WENV182849072
OKKN01000301
[OKKN] human gut metagenome; human gut
892
817
-
Thr
TGT
[ENA]
¢þ
>WENV182849126
OKKN01001587
[OKKN] human gut metagenome; human gut
931
844
-
Ser
TGA
[ENA]
¢þ
>WENV182849094
OKKN01000375
[OKKN] human gut metagenome; human gut
948
1019
+
Gly
GCC
[ENA]
¢þ
>WENV182849071
OKKN01000301
[OKKN] human gut metagenome; human gut
990
914
-
Asp
GTC
[ENA]
¢þ
>WENV182849095
OKKN01000375
[OKKN] human gut metagenome; human gut
1035
1120
+
Leu
TAA
[ENA]
¢þ
>WENV182849070
OKKN01000301
[OKKN] human gut metagenome; human gut
1082
1007
-
Val
TAC
[ENA]
¢þ
>WENV182849113
OKKN01000821
[OKKN] human gut metagenome; human gut
1086
1161
+
Asn
GTT
[ENA]
¢þ
>WENV182849096
OKKN01000375
[OKKN] human gut metagenome; human gut
1135
1208
+
Arg
ACG
[ENA]
¢þ
>WENV182849069
OKKN01000301
[OKKN] human gut metagenome; human gut
1168
1095
-
Gly
TCC
[ENA]
¢þ
>WENV182849097
OKKN01000375
[OKKN] human gut metagenome; human gut
1220
1293
+
Pro
TGG
[ENA]
¢þ
>WENV182849068
OKKN01000301
[OKKN] human gut metagenome; human gut
1244
1170
-
Glu
TTC
[ENA]
¢þ
>WENV182849067
OKKN01000301
[OKKN] human gut metagenome; human gut
1332
1257
-
fMet
CAT
[ENA]
¢þ
>WENV182849066
OKKN01000301
[OKKN] human gut metagenome; human gut
1431
1342
-
Leu
TAA
[ENA]
¢þ
>WENV182849082
OKKN01000317
[OKKN] human gut metagenome; human gut
1456
1527
+
Trp
CCA
[ENA]
¢þ
>WENV182849065
OKKN01000301
[OKKN] human gut metagenome; human gut
1513
1439
-
Asn
GTT
[ENA]
¢þ
>WENV182849039
OKKN01000129
[OKKN] human gut metagenome; human gut
1614
1541
-
Glu
CTC
[ENA]
¢þ
>WENV182849086
OKKN01000369
[OKKN] human gut metagenome; human gut
1908
1983
+
Thr
TGT
[ENA]
¢þ
>WENV182849120
OKKN01000933
[OKKN] human gut metagenome; human gut
1967
1892
-
Arg
TCT
[ENA]
¢þ
>WENV182849124
OKKN01001118
[OKKN] human gut metagenome; human gut
2092
2017
-
Thr
GGT
[ENA]
¢þ
>WENV182849083
OKKN01000328
[OKKN] human gut metagenome; human gut
2211
2287
+
fMet
CAT
[ENA]
¢þ
>WENV182848992
OKKN01000006
[OKKN] human gut metagenome; human gut
2284
2198
-
Leu
GAG
[ENA]
¢þ
>WENV182849119
OKKN01000909
[OKKN] human gut metagenome; human gut
3426
3500
+
Gln
CTG
[ENA]
¢þ
>WENV182849019
OKKN01000041
[OKKN] human gut metagenome; human gut
3439
3367
-
Thr
CGT
[ENA]
¢þ
>WENV182849121
OKKN01000950
[OKKN] human gut metagenome; human gut
3461
3536
+
Lys
CTT
[ENA]
¢þ
>WENV182848997
OKKN01000024
[OKKN] human gut metagenome; human gut
3876
3951
+
Thr
TGT
[ENA]
¢þ
>WENV182848998
OKKN01000024
[OKKN] human gut metagenome; human gut
3962
4046
+
Tyr
GTA
[ENA]
¢þ
>WENV182849111
OKKN01000678
[OKKN] human gut metagenome; human gut
4027
4100
+
Arg
CCG
[ENA]
¢þ
>WENV182849099
OKKN01000407
[OKKN] human gut metagenome; human gut
4031
4117
+
Leu
GAG
[ENA]
¢þ
>WENV182848999
OKKN01000024
[OKKN] human gut metagenome; human gut
4162
4236
+
Gly
TCC
[ENA]
¢þ
>WENV182849000
OKKN01000024
[OKKN] human gut metagenome; human gut
4242
4317
+
Thr
GGT
[ENA]
¢þ
>WENV182849104
OKKN01000583
[OKKN] human gut metagenome; human gut
4336
4412
+
Met
CAT
[ENA]
¢þ
>WENV182849003
OKKN01000025
[OKKN] human gut metagenome; human gut
4458
4369
-
Ser
CGA
[ENA]
¢þ
>WENV182849105
OKKN01000583
[OKKN] human gut metagenome; human gut
4460
4534
+
Gln
CTG
[ENA]
¢þ
>WENV182849117
OKKN01000849
[OKKN] human gut metagenome; human gut
4616
4540
-
Arg
CCT
[ENA]
¢þ
>WENV182849114
OKKN01000826
[OKKN] human gut metagenome; human gut
4693
4785
+
Ser
GCT
[ENA]
¢þ
>WENV182849047
OKKN01000184
[OKKN] human gut metagenome; human gut
4779
4855
+
Arg
TCT
[ENA]
¢þ
>WENV182849115
OKKN01000826
[OKKN] human gut metagenome; human gut
4790
4866
+
Arg
ACG
[ENA]
¢þ
>WENV182849064
OKKN01000301
[OKKN] human gut metagenome; human gut
4866
4790
-
Ile
GAT
[ENA]
¢þ
>WENV182849063
OKKN01000301
[OKKN] human gut metagenome; human gut
4946
4876
-
Gly
TCC
[ENA]
¢þ
>WENV182849062
OKKN01000301
[OKKN] human gut metagenome; human gut
5024
4948
-
Asp
GTC
[ENA]
¢þ
>WENV182849061
OKKN01000301
[OKKN] human gut metagenome; human gut
5137
5062
-
fMet
CAT
[ENA]
¢þ
>WENV182849060
OKKN01000301
[OKKN] human gut metagenome; human gut
5259
5170
-
Ser
TGA
[ENA]
¢þ
>WENV182849059
OKKN01000301
[OKKN] human gut metagenome; human gut
5367
5292
-
Ile2
CAT
[ENA]
¢þ
>WENV182849025
OKKN01000073
[OKKN] human gut metagenome; human gut
5833
5916
+
Tyr
GTA
[ENA]
¢þ
>WENV182849026
OKKN01000073
[OKKN] human gut metagenome; human gut
5917
5990
+
Gln
TTG
[ENA]
¢þ
>WENV182849089
OKKN01000371
[OKKN] human gut metagenome; human gut
6268
6193
-
Ala
GGC
[ENA]
¢þ
>WENV182849015
OKKN01000037
[OKKN] human gut metagenome; human gut
6388
6463
+
Phe
GAA
[ENA]
¢þ
>WENV182849050
OKKN01000232
[OKKN] human gut metagenome; human gut
6446
6518
+
Thr
CGT
[ENA]
¢þ
>WENV182849103
OKKN01000521
[OKKN] human gut metagenome; human gut
6919
6832
-
Ser
GGA
[ENA]
¢þ
>WENV182849101
OKKN01000413
[OKKN] human gut metagenome; human gut
7402
7478
+
Arg
TCT
[ENA]
¢þ
>WENV182849098
OKKN01000391
[OKKN] human gut metagenome; human gut
7611
7526
-
Leu
CAG
[ENA]
¢þ
>WENV182849108
OKKN01000627
[OKKN] human gut metagenome; human gut
7755
7682
-
His
GTG
[ENA]
¢þ
>WENV182849107
OKKN01000627
[OKKN] human gut metagenome; human gut
7899
7814
-
Leu
CAA
[ENA]
¢þ
>WENV182849100
OKKN01000407
[OKKN] human gut metagenome; human gut
8047
8123
+
fMet
CAT
[ENA]
¢þ
>WENV182849106
OKKN01000602
[OKKN] human gut metagenome; human gut
8267
8350
+
Leu
CAA
[ENA]
¢þ
>WENV182849041
OKKN01000137
[OKKN] human gut metagenome; human gut
8506
8596
+
Ser
GGA
[ENA]
¢þ
>WENV182849045
OKKN01000167
[OKKN] human gut metagenome; human gut
8941
9025
+
Leu
TAG
[ENA]
¢þ
>WENV182849087
OKKN01000371
[OKKN] human gut metagenome; human gut
8967
9042
+
Val
TAC
[ENA]
¢þ
>WENV182849088
OKKN01000371
[OKKN] human gut metagenome; human gut
9047
9122
+
Lys
TTT
[ENA]
¢þ
>WENV182848990
OKKN01000003
[OKKN] human gut metagenome; human gut
9130
9055
-
Asn
GTT
[ENA]
¢þ
>WENV182849030
OKKN01000087
[OKKN] human gut metagenome; human gut
10029
10123
+
SeC
TCA
[ENA]
¢þ
>WENV182849052
OKKN01000242
[OKKN] human gut metagenome; human gut
10073
10149
+
Asp
GTC
[ENA]
¢þ
>WENV182849028
OKKN01000082
[OKKN] human gut metagenome; human gut
10585
10509
-
Pro
CGG
[ENA]
¢þ
>WENV182849014
OKKN01000035
[OKKN] human gut metagenome; human gut
10935
10862
-
Gly
TCC
[ENA]
¢þ
>WENV182849013
OKKN01000035
[OKKN] human gut metagenome; human gut
11022
10946
-
Pro
TGG
[ENA]
¢þ
>WENV182849029
OKKN01000083
[OKKN] human gut metagenome; human gut
11212
11295
+
Leu
AAG
[ENA]
¢þ
>WENV182849032
OKKN01000093
[OKKN] human gut metagenome; human gut
11412
11487
+
His
GTG
[ENA]
¢þ
>WENV182849033
OKKN01000093
[OKKN] human gut metagenome; human gut
11512
11586
+
Gln
TTG
[ENA]
¢þ
>WENV182849034
OKKN01000093
[OKKN] human gut metagenome; human gut
11591
11666
+
Lys
TTT
[ENA]
¢þ
>WENV182849035
OKKN01000093
[OKKN] human gut metagenome; human gut
11672
11746
+
Glu
TTC
[ENA]
¢þ
>WENV182849036
OKKN01000093
[OKKN] human gut metagenome; human gut
11752
11827
+
Val
TAC
[ENA]
¢þ
>WENV182849048
OKKN01000189
[OKKN] human gut metagenome; human gut
11828
11757
-
Cys
GCA
[ENA]
¢þ
>WENV182849084
OKKN01000344
[OKKN] human gut metagenome; human gut
13150
13223
+
Gly
CCC
[ENA]
¢þ
>WENV182849054
OKKN01000248
[OKKN] human gut metagenome; human gut
13496
13572
+
Arg
CCG
[ENA]
¢þ
>WENV182849085
OKKN01000345
[OKKN] human gut metagenome; human gut
13506
13590
+
Tyr
GTA
[ENA]
¢þ
>WENV182849055
OKKN01000248
[OKKN] human gut metagenome; human gut
13628
13703
+
His
GTG
[ENA]
¢þ
>WENV182849056
OKKN01000248
[OKKN] human gut metagenome; human gut
13727
13813
+
Leu
CAG
[ENA]
¢þ
>WENV182849057
OKKN01000248
[OKKN] human gut metagenome; human gut
13856
13932
+
Pro
TGG
[ENA]
¢þ
>WENV182848989
OKKN01000003
[OKKN] human gut metagenome; human gut
14371
14296
-
Asn
GTT
[ENA]
¢þ
>WENV182849053
OKKN01000246
[OKKN] human gut metagenome; human gut
14548
14473
-
Arg
CCT
[ENA]
¢þ
>WENV182849031
OKKN01000092
[OKKN] human gut metagenome; human gut
15208
15118
-
Ser
GCT
[ENA]
¢þ
>WENV182848985
OKKN01000003
[OKKN] human gut metagenome; human gut
15363
15452
+
Ser
CGA
[ENA]
¢þ
>WENV182849058
OKKN01000294
[OKKN] human gut metagenome; human gut
16213
16128
-
Leu
CAA
[ENA]
¢þ
>WENV182848996
OKKN01000017
[OKKN] human gut metagenome; human gut
16716
16640
-
Val
GAC
[ENA]
¢þ
>WENV182848995
OKKN01000017
[OKKN] human gut metagenome; human gut
16797
16721
-
Val
GAC
[ENA]
¢þ
>WENV182849004
OKKN01000033
[OKKN] human gut metagenome; human gut
16827
16902
+
Thr
TGT
[ENA]
¢þ
>WENV182849005
OKKN01000033
[OKKN] human gut metagenome; human gut
16913
16997
+
Tyr
GTA
[ENA]
¢þ
>WENV182849006
OKKN01000033
[OKKN] human gut metagenome; human gut
17003
17078
+
fMet
CAT
[ENA]
¢þ
>WENV182849007
OKKN01000033
[OKKN] human gut metagenome; human gut
17110
17185
+
Thr
GGT
[ENA]
¢þ
>WENV182849008
OKKN01000033
[OKKN] human gut metagenome; human gut
17191
17267
+
Met
CAT
[ENA]
¢þ
>WENV182849042
OKKN01000152
[OKKN] human gut metagenome; human gut
18678
18764
+
Leu
CAG
[ENA]
¢þ
>WENV182849046
OKKN01000181
[OKKN] human gut metagenome; human gut
19969
20043
+
Lys
CTT
[ENA]
¢þ
>WENV182849040
OKKN01000135
[OKKN] human gut metagenome; human gut
22020
22095
+
Gly
GCC
[ENA]
¢þ
>WENV182849020
OKKN01000043
[OKKN] human gut metagenome; human gut
24183
24096
-
Ser
TGA
[ENA]
¢þ
>WENV182849016
OKKN01000040
[OKKN] human gut metagenome; human gut
25894
25969
+
Asp
GTC
[ENA]
¢þ
>WENV182849017
OKKN01000040
[OKKN] human gut metagenome; human gut
25975
26050
+
Phe
GAA
[ENA]
¢þ
>WENV182849018
OKKN01000040
[OKKN] human gut metagenome; human gut
26063
26148
+
Leu
GAG
[ENA]
¢þ
>WENV182849038
OKKN01000128
[OKKN] human gut metagenome; human gut
26104
26178
+
Arg
CCG
[ENA]
¢þ
>WENV182849037
OKKN01000107
[OKKN] human gut metagenome; human gut
27735
27831
+
SeC
TCA
[ENA]
¢þ
>WENV182849023
OKKN01000063
[OKKN] human gut metagenome; human gut
28684
28599
-
Ser
TGA
[ENA]
¢þ
>WENV182849024
OKKN01000064
[OKKN] human gut metagenome; human gut
31821
31897
+
Pro
GGG
[ENA]
¢þ
>WENV182849027
OKKN01000078
[OKKN] human gut metagenome; human gut
31973
32061
+
Ser
TGA
[ENA]
¢þ
>WENV182849012
OKKN01000035
[OKKN] human gut metagenome; human gut
32148
32238
+
Ser
CGA
[ENA]
¢þ
>WENV182849022
OKKN01000051
[OKKN] human gut metagenome; human gut
32658
32582
-
Arg
CCT
[ENA]
¢þ
>WENV182849002
OKKN01000025
[OKKN] human gut metagenome; human gut
36032
35957
-
Asn
GTT
[ENA]
¢þ
>WENV182848986
OKKN01000003
[OKKN] human gut metagenome; human gut
36558
36633
+
Gly
GCC
[ENA]
¢þ
>WENV182848987
OKKN01000003
[OKKN] human gut metagenome; human gut
36674
36747
+
Cys
GCA
[ENA]
¢þ
>WENV182848988
OKKN01000003
[OKKN] human gut metagenome; human gut
36761
36847
+
Leu
TAA
[ENA]
¢þ
>WENV182849001
OKKN01000025
[OKKN] human gut metagenome; human gut
37428
37501
+
Thr
GGT
[ENA]
¢þ
>WENV182849021
OKKN01000046
[OKKN] human gut metagenome; human gut
39412
39337
-
Thr
CGT
[ENA]
¢þ
>WENV182849009
OKKN01000033
[OKKN] human gut metagenome; human gut
43291
43365
+
Gly
GCC
[ENA]
¢þ
>WENV182849010
OKKN01000033
[OKKN] human gut metagenome; human gut
43375
43449
+
Cys
GCA
[ENA]
¢þ
>WENV182849011
OKKN01000033
[OKKN] human gut metagenome; human gut
43464
43552
+
Leu
TAA
[ENA]
¢þ
>WENV182848991
OKKN01000005
[OKKN] human gut metagenome; human gut
47778
47853
+
Arg
CCT
[ENA]
¢þ
>WENV182848994
OKKN01000013
[OKKN] human gut metagenome; human gut
52878
52948
+
Gly
CCC
[ENA]
¢þ
>WENV182848993
OKKN01000007
[OKKN] human gut metagenome; human gut
57570
57644
+
Ile2
CAT
[ENA]
¢þ
>WENV182848984
OKKN01000001
[OKKN] human gut metagenome; human gut
76874
76947
+
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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