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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKKX] human gut metagenome; human gut
HIT:
90 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182850194
OKKX01000285
[OKKX] human gut metagenome; human gut
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV182850187
OKKX01000139
[OKKX] human gut metagenome; human gut
106
182
+
Asp
GTC
[ENA]
¢þ
>WENV182850145
OKKX01000012
[OKKX] human gut metagenome; human gut
135
60
-
Val
TAC
[ENA]
¢þ
>WENV182850213
OKKX01002070
[OKKX] human gut metagenome; human gut
141
216
+
Glu
TTC
[ENA]
¢þ
>WENV182850160
OKKX01000027
[OKKX] human gut metagenome; human gut
143
219
+
Asp
GTC
[ENA]
¢þ
>WENV182850146
OKKX01000013
[OKKX] human gut metagenome; human gut
151
75
-
Val
GAC
[ENA]
¢þ
>WENV182850195
OKKX01000285
[OKKX] human gut metagenome; human gut
183
269
+
Leu
TAA
[ENA]
¢þ
>WENV182850181
OKKX01000107
[OKKX] human gut metagenome; human gut
205
281
+
Arg
ACG
[ENA]
¢þ
>WENV182850193
OKKX01000244
[OKKX] human gut metagenome; human gut
281
205
-
Pro
CGG
[ENA]
¢þ
>WENV182850209
OKKX01000901
[OKKX] human gut metagenome; human gut
435
362
-
Gly
CCC
[ENA]
¢þ
>WENV182850212
OKKX01001533
[OKKX] human gut metagenome; human gut
843
767
-
fMet
CAT
[ENA]
¢þ
>WENV182850211
OKKX01001265
[OKKX] human gut metagenome; human gut
1689
1764
+
Thr
TGT
[ENA]
¢þ
>WENV182850210
OKKX01001208
[OKKX] human gut metagenome; human gut
1954
1879
-
Ile2
CAT
[ENA]
¢þ
>WENV182850190
OKKX01000161
[OKKX] human gut metagenome; human gut
2017
1933
-
Leu
CAA
[ENA]
¢þ
>WENV182850197
OKKX01000399
[OKKX] human gut metagenome; human gut
2222
2135
-
Ser
TGA
[ENA]
¢þ
>WENV182850208
OKKX01000855
[OKKX] human gut metagenome; human gut
2609
2533
-
Val
GAC
[ENA]
¢þ
>WENV182850143
OKKX01000012
[OKKX] human gut metagenome; human gut
3005
3080
+
Ala
GGC
[ENA]
¢þ
>WENV182850179
OKKX01000085
[OKKX] human gut metagenome; human gut
3146
3074
-
Arg
CCT
[ENA]
¢þ
>WENV182850196
OKKX01000310
[OKKX] human gut metagenome; human gut
3318
3232
-
Leu
GAG
[ENA]
¢þ
>WENV182850203
OKKX01000423
[OKKX] human gut metagenome; human gut
3627
3702
+
Thr
TGT
[ENA]
¢þ
>WENV182850204
OKKX01000423
[OKKX] human gut metagenome; human gut
3713
3797
+
Tyr
GTA
[ENA]
¢þ
>WENV182850205
OKKX01000423
[OKKX] human gut metagenome; human gut
3913
3987
+
Gly
TCC
[ENA]
¢þ
>WENV182850206
OKKX01000423
[OKKX] human gut metagenome; human gut
3993
4068
+
Thr
GGT
[ENA]
¢þ
>WENV182850207
OKKX01000495
[OKKX] human gut metagenome; human gut
4157
4083
-
Gln
CTG
[ENA]
¢þ
>WENV182850199
OKKX01000409
[OKKX] human gut metagenome; human gut
4547
4622
+
Thr
TGT
[ENA]
¢þ
>WENV182850200
OKKX01000409
[OKKX] human gut metagenome; human gut
4648
4732
+
Tyr
GTA
[ENA]
¢þ
>WENV182850201
OKKX01000409
[OKKX] human gut metagenome; human gut
4932
5006
+
Gly
TCC
[ENA]
¢þ
>WENV182850202
OKKX01000409
[OKKX] human gut metagenome; human gut
5013
5088
+
Thr
GGT
[ENA]
¢þ
>WENV182850198
OKKX01000406
[OKKX] human gut metagenome; human gut
5142
5067
-
Trp
CCA
[ENA]
¢þ
>WENV182850184
OKKX01000125
[OKKX] human gut metagenome; human gut
5403
5317
-
Leu
CAG
[ENA]
¢þ
>WENV182850149
OKKX01000019
[OKKX] human gut metagenome; human gut
6064
6140
+
Arg
CCG
[ENA]
¢þ
>WENV182850150
OKKX01000019
[OKKX] human gut metagenome; human gut
6204
6279
+
His
GTG
[ENA]
¢þ
>WENV182850151
OKKX01000019
[OKKX] human gut metagenome; human gut
6321
6407
+
Leu
CAG
[ENA]
¢þ
>WENV182850152
OKKX01000019
[OKKX] human gut metagenome; human gut
6482
6558
+
Pro
TGG
[ENA]
¢þ
>WENV182850192
OKKX01000200
[OKKX] human gut metagenome; human gut
6774
6699
-
Phe
GAA
[ENA]
¢þ
>WENV182850176
OKKX01000062
[OKKX] human gut metagenome; human gut
7257
7341
+
Tyr
GTA
[ENA]
¢þ
>WENV182850159
OKKX01000026
[OKKX] human gut metagenome; human gut
7895
7820
-
Lys
TTT
[ENA]
¢þ
>WENV182850158
OKKX01000026
[OKKX] human gut metagenome; human gut
7975
7900
-
Val
TAC
[ENA]
¢þ
>WENV182850161
OKKX01000027
[OKKX] human gut metagenome; human gut
8940
9016
+
Asp
GTC
[ENA]
¢þ
>WENV182850188
OKKX01000139
[OKKX] human gut metagenome; human gut
9559
9635
+
Asp
GTC
[ENA]
¢þ
>WENV182850155
OKKX01000026
[OKKX] human gut metagenome; human gut
10674
10749
+
Ala
GGC
[ENA]
¢þ
>WENV182850182
OKKX01000109
[OKKX] human gut metagenome; human gut
10913
10986
+
Gly
CCC
[ENA]
¢þ
>WENV182850189
OKKX01000140
[OKKX] human gut metagenome; human gut
12877
12801
-
Arg
TCT
[ENA]
¢þ
>WENV182850153
OKKX01000022
[OKKX] human gut metagenome; human gut
13035
13111
+
Val
GAC
[ENA]
¢þ
>WENV182850154
OKKX01000022
[OKKX] human gut metagenome; human gut
13116
13192
+
Val
GAC
[ENA]
¢þ
>WENV182850180
OKKX01000103
[OKKX] human gut metagenome; human gut
14091
14178
+
Ser
TGA
[ENA]
¢þ
>WENV182850185
OKKX01000137
[OKKX] human gut metagenome; human gut
14300
14387
+
Ser
GGA
[ENA]
¢þ
>WENV182850191
OKKX01000170
[OKKX] human gut metagenome; human gut
14881
14957
+
Met
CAT
[ENA]
¢þ
>WENV182850175
OKKX01000056
[OKKX] human gut metagenome; human gut
16270
16176
-
SeC
TCA
[ENA]
¢þ
>WENV182850174
OKKX01000051
[OKKX] human gut metagenome; human gut
16425
16336
-
Ser
CGA
[ENA]
¢þ
>WENV182850186
OKKX01000137
[OKKX] human gut metagenome; human gut
17385
17472
+
Ser
GGA
[ENA]
¢þ
>WENV182850170
OKKX01000051
[OKKX] human gut metagenome; human gut
17417
17492
+
Asn
GTT
[ENA]
¢þ
>WENV182850183
OKKX01000110
[OKKX] human gut metagenome; human gut
22019
22094
+
Gly
GCC
[ENA]
¢þ
>WENV182850171
OKKX01000051
[OKKX] human gut metagenome; human gut
22658
22733
+
Asn
GTT
[ENA]
¢þ
>WENV182850178
OKKX01000072
[OKKX] human gut metagenome; human gut
23267
23191
-
Pro
GGG
[ENA]
¢þ
>WENV182850168
OKKX01000047
[OKKX] human gut metagenome; human gut
25020
24926
-
SeC
TCA
[ENA]
¢þ
>WENV182850173
OKKX01000051
[OKKX] human gut metagenome; human gut
31652
31577
-
Asn
GTT
[ENA]
¢þ
>WENV182850172
OKKX01000051
[OKKX] human gut metagenome; human gut
33410
33485
+
Asn
GTT
[ENA]
¢þ
>WENV182850177
OKKX01000064
[OKKX] human gut metagenome; human gut
33551
33476
-
Trp
CCA
[ENA]
¢þ
>WENV182850169
OKKX01000048
[OKKX] human gut metagenome; human gut
33728
33653
-
Ile2
CAT
[ENA]
¢þ
>WENV182850144
OKKX01000012
[OKKX] human gut metagenome; human gut
43338
43264
-
Arg
CCT
[ENA]
¢þ
>WENV182850156
OKKX01000026
[OKKX] human gut metagenome; human gut
47622
47699
+
Ile2
CAT
[ENA]
¢þ
>WENV182850157
OKKX01000026
[OKKX] human gut metagenome; human gut
47705
47781
+
Arg
TCT
[ENA]
¢þ
>WENV182850163
OKKX01000029
[OKKX] human gut metagenome; human gut
47952
48039
+
Ser
TGA
[ENA]
¢þ
>WENV182850164
OKKX01000029
[OKKX] human gut metagenome; human gut
48046
48121
+
Thr
TGT
[ENA]
¢þ
>WENV182850162
OKKX01000027
[OKKX] human gut metagenome; human gut
53917
53992
+
Thr
CGT
[ENA]
¢þ
>WENV182850166
OKKX01000031
[OKKX] human gut metagenome; human gut
54648
54564
-
Tyr
GTA
[ENA]
¢þ
>WENV182850165
OKKX01000029
[OKKX] human gut metagenome; human gut
56112
56036
-
Pro
GGG
[ENA]
¢þ
>WENV182850167
OKKX01000032
[OKKX] human gut metagenome; human gut
58157
58082
-
Thr
CGT
[ENA]
¢þ
>WENV182850135
OKKX01000010
[OKKX] human gut metagenome; human gut
62171
62257
+
Leu
GAG
[ENA]
¢þ
>WENV182850136
OKKX01000010
[OKKX] human gut metagenome; human gut
62318
62394
+
fMet
CAT
[ENA]
¢þ
>WENV182850142
OKKX01000011
[OKKX] human gut metagenome; human gut
79079
78994
-
Leu
TAA
[ENA]
¢þ
>WENV182850141
OKKX01000011
[OKKX] human gut metagenome; human gut
79163
79090
-
Cys
GCA
[ENA]
¢þ
>WENV182850140
OKKX01000011
[OKKX] human gut metagenome; human gut
79952
79877
-
Gly
GCC
[ENA]
¢þ
>WENV182850147
OKKX01000014
[OKKX] human gut metagenome; human gut
85329
85254
-
Ile2
CAT
[ENA]
¢þ
>WENV182850148
OKKX01000018
[OKKX] human gut metagenome; human gut
92163
92238
+
Phe
GAA
[ENA]
¢þ
>WENV182850134
OKKX01000008
[OKKX] human gut metagenome; human gut
97274
97201
-
Gly
CCC
[ENA]
¢þ
>WENV182850128
OKKX01000001
[OKKX] human gut metagenome; human gut
104023
103948
-
Asn
GTT
[ENA]
¢þ
>WENV182850139
OKKX01000011
[OKKX] human gut metagenome; human gut
109369
109294
-
Lys
CTT
[ENA]
¢þ
>WENV182850138
OKKX01000011
[OKKX] human gut metagenome; human gut
133363
133276
-
Ser
TGA
[ENA]
¢þ
>WENV182850127
OKKX01000001
[OKKX] human gut metagenome; human gut
143242
143167
-
Asn
GTT
[ENA]
¢þ
>WENV182850137
OKKX01000010
[OKKX] human gut metagenome; human gut
150452
150536
+
Leu
CAA
[ENA]
¢þ
>WENV182850126
OKKX01000001
[OKKX] human gut metagenome; human gut
188724
188649
-
Asn
GTT
[ENA]
¢þ
>WENV182850125
OKKX01000001
[OKKX] human gut metagenome; human gut
202517
202442
-
Asn
GTT
[ENA]
¢þ
>WENV182850124
OKKX01000001
[OKKX] human gut metagenome; human gut
203510
203599
+
Ser
CGA
[ENA]
¢þ
>WENV182850129
OKKX01000005
[OKKX] human gut metagenome; human gut
212011
212087
+
Arg
TCT
[ENA]
¢þ
>WENV182850133
OKKX01000007
[OKKX] human gut metagenome; human gut
220816
220908
+
Ser
GCT
[ENA]
¢þ
>WENV182850131
OKKX01000006
[OKKX] human gut metagenome; human gut
248897
248986
+
Ser
GGA
[ENA]
¢þ
>WENV182850132
OKKX01000006
[OKKX] human gut metagenome; human gut
249623
249712
+
Ser
GGA
[ENA]
¢þ
>WENV182850130
OKKX01000005
[OKKX] human gut metagenome; human gut
269580
269506
-
Gln
CTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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