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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKLK] human gut metagenome; human gut
HIT:
66 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182851134
OKLK01001117
[OKLK] human gut metagenome; human gut
17
93
+
fMet
CAT
[ENA]
¢þ
>WENV182851141
OKLK01001717
[OKLK] human gut metagenome; human gut
45
121
+
Met
CAT
[ENA]
¢þ
>WENV182851131
OKLK01000527
[OKLK] human gut metagenome; human gut
102
27
-
Ala
GGC
[ENA]
¢þ
>WENV182851142
OKLK01001717
[OKLK] human gut metagenome; human gut
131
215
+
Leu
TAG
[ENA]
¢þ
>WENV182851138
OKLK01001618
[OKLK] human gut metagenome; human gut
143
51
-
Ser
GCT
[ENA]
¢þ
>WENV182851130
OKLK01000527
[OKLK] human gut metagenome; human gut
217
142
-
Ala
GGC
[ENA]
¢þ
>WENV182851110
OKLK01000098
[OKLK] human gut metagenome; human gut
237
161
-
Pro
CGG
[ENA]
¢þ
>WENV182851143
OKLK01001717
[OKLK] human gut metagenome; human gut
239
313
+
Gln
TTG
[ENA]
¢þ
>WENV182851146
OKLK01001748
[OKLK] human gut metagenome; human gut
255
180
-
Thr
CGT
[ENA]
¢þ
>WENV182851144
OKLK01001717
[OKLK] human gut metagenome; human gut
348
422
+
Gln
TTG
[ENA]
¢þ
>WENV182851145
OKLK01001717
[OKLK] human gut metagenome; human gut
438
514
+
Met
CAT
[ENA]
¢þ
>WENV182851140
OKLK01001700
[OKLK] human gut metagenome; human gut
455
369
-
Leu
TAA
[ENA]
¢þ
>WENV182851135
OKLK01001332
[OKLK] human gut metagenome; human gut
488
563
+
Glu
TTC
[ENA]
¢þ
>WENV182851139
OKLK01001700
[OKLK] human gut metagenome; human gut
541
468
-
Cys
GCA
[ENA]
¢þ
>WENV182851137
OKLK01001472
[OKLK] human gut metagenome; human gut
709
634
-
Lys
TTT
[ENA]
¢þ
>WENV182851136
OKLK01001472
[OKLK] human gut metagenome; human gut
789
714
-
Val
TAC
[ENA]
¢þ
>WENV182851113
OKLK01000178
[OKLK] human gut metagenome; human gut
1149
1065
-
Tyr
GTA
[ENA]
¢þ
>WENV182851132
OKLK01000770
[OKLK] human gut metagenome; human gut
1271
1196
-
Ile2
CAT
[ENA]
¢þ
>WENV182851117
OKLK01000201
[OKLK] human gut metagenome; human gut
1304
1229
-
Asn
GTT
[ENA]
¢þ
>WENV182851118
OKLK01000265
[OKLK] human gut metagenome; human gut
1401
1495
+
SeC
TCA
[ENA]
¢þ
>WENV182851105
OKLK01000015
[OKLK] human gut metagenome; human gut
1474
1399
-
Asn
GTT
[ENA]
¢þ
>WENV182851115
OKLK01000195
[OKLK] human gut metagenome; human gut
1658
1744
+
Leu
GAG
[ENA]
¢þ
>WENV182851129
OKLK01000504
[OKLK] human gut metagenome; human gut
1688
1601
-
Ser
GGA
[ENA]
¢þ
>WENV182851133
OKLK01000831
[OKLK] human gut metagenome; human gut
1883
1808
-
Trp
CCA
[ENA]
¢þ
>WENV182851112
OKLK01000150
[OKLK] human gut metagenome; human gut
1914
1989
+
Phe
GAA
[ENA]
¢þ
>WENV182851109
OKLK01000082
[OKLK] human gut metagenome; human gut
2071
1997
-
Arg
CCT
[ENA]
¢þ
>WENV182851107
OKLK01000049
[OKLK] human gut metagenome; human gut
2147
2063
-
Leu
CAA
[ENA]
¢þ
>WENV182851111
OKLK01000143
[OKLK] human gut metagenome; human gut
2370
2446
+
Pro
GGG
[ENA]
¢þ
>WENV182851104
OKLK01000015
[OKLK] human gut metagenome; human gut
2466
2555
+
Ser
CGA
[ENA]
¢þ
>WENV182851114
OKLK01000192
[OKLK] human gut metagenome; human gut
2774
2687
-
Ser
GGA
[ENA]
¢þ
>WENV182851119
OKLK01000292
[OKLK] human gut metagenome; human gut
3006
3082
+
Arg
TCT
[ENA]
¢þ
>WENV182851121
OKLK01000332
[OKLK] human gut metagenome; human gut
3206
3282
+
Arg
CCG
[ENA]
¢þ
>WENV182851122
OKLK01000332
[OKLK] human gut metagenome; human gut
3341
3416
+
His
GTG
[ENA]
¢þ
>WENV182851120
OKLK01000300
[OKLK] human gut metagenome; human gut
3364
3289
-
Phe
GAA
[ENA]
¢þ
>WENV182851123
OKLK01000332
[OKLK] human gut metagenome; human gut
3437
3523
+
Leu
CAG
[ENA]
¢þ
>WENV182851125
OKLK01000341
[OKLK] human gut metagenome; human gut
3501
3576
+
Thr
TGT
[ENA]
¢þ
>WENV182851124
OKLK01000332
[OKLK] human gut metagenome; human gut
3566
3642
+
Pro
TGG
[ENA]
¢þ
>WENV182851126
OKLK01000341
[OKLK] human gut metagenome; human gut
3585
3669
+
Tyr
GTA
[ENA]
¢þ
>WENV182851101
OKLK01000003
[OKLK] human gut metagenome; human gut
3619
3692
+
Gly
CCC
[ENA]
¢þ
>WENV182851116
OKLK01000201
[OKLK] human gut metagenome; human gut
3712
3637
-
Asn
GTT
[ENA]
¢þ
>WENV182851127
OKLK01000341
[OKLK] human gut metagenome; human gut
3786
3860
+
Gly
TCC
[ENA]
¢þ
>WENV182851128
OKLK01000341
[OKLK] human gut metagenome; human gut
3867
3942
+
Thr
GGT
[ENA]
¢þ
>WENV182851108
OKLK01000063
[OKLK] human gut metagenome; human gut
4419
4494
+
Ile2
CAT
[ENA]
¢þ
>WENV182851106
OKLK01000034
[OKLK] human gut metagenome; human gut
11096
11009
-
Ser
TGA
[ENA]
¢þ
>WENV182851102
OKLK01000006
[OKLK] human gut metagenome; human gut
16842
16918
+
Val
GAC
[ENA]
¢þ
>WENV182851103
OKLK01000006
[OKLK] human gut metagenome; human gut
16923
16999
+
Val
GAC
[ENA]
¢þ
>WENV182851100
OKLK01000001
[OKLK] human gut metagenome; human gut
29505
29430
-
Cys
GCA
[ENA]
¢þ
>WENV182851099
OKLK01000001
[OKLK] human gut metagenome; human gut
29602
29510
-
Ser
GCT
[ENA]
¢þ
>WENV182851098
OKLK01000001
[OKLK] human gut metagenome; human gut
30513
30438
-
His
GTG
[ENA]
¢þ
>WENV182851097
OKLK01000001
[OKLK] human gut metagenome; human gut
30620
30545
-
Gln
CTG
[ENA]
¢þ
>WENV182851096
OKLK01000001
[OKLK] human gut metagenome; human gut
30704
30626
-
Leu
TAA
[ENA]
¢þ
>WENV182851095
OKLK01000001
[OKLK] human gut metagenome; human gut
30782
30707
-
Gln
TTG
[ENA]
¢þ
>WENV182851094
OKLK01000001
[OKLK] human gut metagenome; human gut
31680
31605
-
Arg
ACG
[ENA]
¢þ
>WENV182851093
OKLK01000001
[OKLK] human gut metagenome; human gut
31764
31687
-
Leu
CAA
[ENA]
¢þ
>WENV182851092
OKLK01000001
[OKLK] human gut metagenome; human gut
31840
31766
-
Val
TAC
[ENA]
¢þ
>WENV182851091
OKLK01000001
[OKLK] human gut metagenome; human gut
32012
31937
-
Thr
TGT
[ENA]
¢þ
>WENV182851090
OKLK01000001
[OKLK] human gut metagenome; human gut
32094
32020
-
Gly
TCC
[ENA]
¢þ
>WENV182851089
OKLK01000001
[OKLK] human gut metagenome; human gut
32176
32101
-
Ala
TGC
[ENA]
¢þ
>WENV182851088
OKLK01000001
[OKLK] human gut metagenome; human gut
32689
32600
-
Ser
TGA
[ENA]
¢þ
>WENV182851087
OKLK01000001
[OKLK] human gut metagenome; human gut
33005
32929
-
Arg
TCT
[ENA]
¢þ
>WENV182851086
OKLK01000001
[OKLK] human gut metagenome; human gut
33356
33281
-
Ile
GAT
[ENA]
¢þ
>WENV182851085
OKLK01000001
[OKLK] human gut metagenome; human gut
33434
33358
-
Met
CAT
[ENA]
¢þ
>WENV182851084
OKLK01000001
[OKLK] human gut metagenome; human gut
34092
34016
-
Asp
GTC
[ENA]
¢þ
>WENV182851083
OKLK01000001
[OKLK] human gut metagenome; human gut
34270
34194
-
Asn
GTT
[ENA]
¢þ
>WENV182851082
OKLK01000001
[OKLK] human gut metagenome; human gut
34599
34522
-
Glu
TTC
[ENA]
¢þ
>WENV182851081
OKLK01000001
[OKLK] human gut metagenome; human gut
34683
34607
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK