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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKLS] human gut metagenome; human gut
HIT:
64 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182851899
OKLS01006565
[OKLS] human gut metagenome; human gut
5
94
+
Ser
CGA
[ENA]
¢þ
>WENV182851884
OKLS01003318
[OKLS] human gut metagenome; human gut
43
117
+
Leu
TAA
[ENA]
¢þ
>WENV182851908
OKLS01008638
[OKLS] human gut metagenome; human gut
58
141
+
Leu
TAG
[ENA]
¢þ
>WENV182851852
OKLS01000103
[OKLS] human gut metagenome; human gut
64
140
+
Arg
TCT
[ENA]
¢þ
>WENV182851869
OKLS01001191
[OKLS] human gut metagenome; human gut
69
142
+
Gly
GCC
[ENA]
¢þ
>WENV182851882
OKLS01003008
[OKLS] human gut metagenome; human gut
76
2
-
Thr
TGT
[ENA]
¢þ
>WENV182851883
OKLS01003312
[OKLS] human gut metagenome; human gut
87
161
+
Asp
GTC
[ENA]
¢þ
>WENV182851859
OKLS01000497
[OKLS] human gut metagenome; human gut
93
21
-
Phe
GAA
[ENA]
¢þ
>WENV182851868
OKLS01001034
[OKLS] human gut metagenome; human gut
94
171
+
Val
TAC
[ENA]
¢þ
>WENV182851870
OKLS01001426
[OKLS] human gut metagenome; human gut
99
182
+
Tyr
GTA
[ENA]
¢þ
>WENV182851871
OKLS01001539
[OKLS] human gut metagenome; human gut
115
40
-
Phe
GAA
[ENA]
¢þ
>WENV182851888
OKLS01004091
[OKLS] human gut metagenome; human gut
116
192
+
Arg
ACG
[ENA]
¢þ
>WENV182851909
OKLS01008638
[OKLS] human gut metagenome; human gut
147
222
+
Thr
TGT
[ENA]
¢þ
>WENV182851905
OKLS01007656
[OKLS] human gut metagenome; human gut
148
75
-
Lys
CTT
[ENA]
¢þ
>WENV182851898
OKLS01005953
[OKLS] human gut metagenome; human gut
151
77
-
Val
GAC
[ENA]
¢þ
>WENV182851893
OKLS01005409
[OKLS] human gut metagenome; human gut
161
86
-
Thr
TGT
[ENA]
¢þ
>WENV182851858
OKLS01000497
[OKLS] human gut metagenome; human gut
214
139
-
Asp
GTC
[ENA]
¢þ
>WENV182851897
OKLS01005953
[OKLS] human gut metagenome; human gut
223
152
-
Cys
GCA
[ENA]
¢þ
>WENV182851910
OKLS01008638
[OKLS] human gut metagenome; human gut
227
298
+
Gly
GCC
[ENA]
¢þ
>WENV182851904
OKLS01007656
[OKLS] human gut metagenome; human gut
246
173
-
Lys
CTT
[ENA]
¢þ
>WENV182851866
OKLS01000907
[OKLS] human gut metagenome; human gut
268
183
-
Leu
TAA
[ENA]
¢þ
>WENV182851856
OKLS01000311
[OKLS] human gut metagenome; human gut
285
210
-
Ala
TGC
[ENA]
¢þ
>WENV182851857
OKLS01000497
[OKLS] human gut metagenome; human gut
298
224
-
Val
TAC
[ENA]
¢þ
>WENV182851911
OKLS01008638
[OKLS] human gut metagenome; human gut
314
399
+
Leu
TAA
[ENA]
¢þ
>WENV182851913
OKLS01008963
[OKLS] human gut metagenome; human gut
315
390
+
His
GTG
[ENA]
¢þ
>WENV182851896
OKLS01005953
[OKLS] human gut metagenome; human gut
324
251
-
Gly
GCC
[ENA]
¢þ
>WENV182851887
OKLS01003607
[OKLS] human gut metagenome; human gut
328
400
+
Cys
GCA
[ENA]
¢þ
>WENV182851853
OKLS01000135
[OKLS] human gut metagenome; human gut
345
270
-
Lys
TTT
[ENA]
¢þ
>WENV182851902
OKLS01006798
[OKLS] human gut metagenome; human gut
346
430
+
Leu
CAA
[ENA]
¢þ
>WENV182851876
OKLS01001942
[OKLS] human gut metagenome; human gut
357
283
-
Ile2
CAT
[ENA]
¢þ
>WENV182851865
OKLS01000907
[OKLS] human gut metagenome; human gut
357
284
-
Gly
GCC
[ENA]
¢þ
>WENV182851873
OKLS01001812
[OKLS] human gut metagenome; human gut
360
434
+
Ile
GAT
[ENA]
¢þ
>WENV182851855
OKLS01000311
[OKLS] human gut metagenome; human gut
404
328
-
Ile
GAT
[ENA]
¢þ
>WENV182851912
OKLS01008638
[OKLS] human gut metagenome; human gut
414
487
+
Arg
ACG
[ENA]
¢þ
>WENV182851906
OKLS01007744
[OKLS] human gut metagenome; human gut
428
515
+
Ser
CGA
[ENA]
¢þ
>WENV182851890
OKLS01004668
[OKLS] human gut metagenome; human gut
434
507
+
Arg
CCG
[ENA]
¢þ
>WENV182851872
OKLS01001672
[OKLS] human gut metagenome; human gut
440
528
+
Ser
GGA
[ENA]
¢þ
>WENV182851874
OKLS01001812
[OKLS] human gut metagenome; human gut
449
523
+
Ala
TGC
[ENA]
¢þ
>WENV182851907
OKLS01008524
[OKLS] human gut metagenome; human gut
450
524
+
Ile2
CAT
[ENA]
¢þ
>WENV182851903
OKLS01007310
[OKLS] human gut metagenome; human gut
466
540
+
Asn
GTT
[ENA]
¢þ
>WENV182851867
OKLS01000945
[OKLS] human gut metagenome; human gut
480
564
+
Leu
CAA
[ENA]
¢þ
>WENV182851880
OKLS01002648
[OKLS] human gut metagenome; human gut
500
575
+
Pro
TGG
[ENA]
¢þ
>WENV182851891
OKLS01004794
[OKLS] human gut metagenome; human gut
518
433
-
Ser
GGA
[ENA]
¢þ
>WENV182851892
OKLS01005397
[OKLS] human gut metagenome; human gut
552
633
+
Tyr
GTA
[ENA]
¢þ
>WENV182851901
OKLS01006747
[OKLS] human gut metagenome; human gut
578
651
+
Gly
CCC
[ENA]
¢þ
>WENV182851900
OKLS01006653
[OKLS] human gut metagenome; human gut
607
536
-
Gly
CCC
[ENA]
¢þ
>WENV182851894
OKLS01005418
[OKLS] human gut metagenome; human gut
610
683
+
Ala
GGC
[ENA]
¢þ
>WENV182851889
OKLS01004143
[OKLS] human gut metagenome; human gut
614
689
+
Asn
GTT
[ENA]
¢þ
>WENV182851895
OKLS01005896
[OKLS] human gut metagenome; human gut
632
711
+
Gln
TTG
[ENA]
¢þ
>WENV182851886
OKLS01003512
[OKLS] human gut metagenome; human gut
774
857
+
Leu
TAG
[ENA]
¢þ
>WENV182851861
OKLS01000565
[OKLS] human gut metagenome; human gut
866
793
-
Pro
CGG
[ENA]
¢þ
>WENV182851885
OKLS01003322
[OKLS] human gut metagenome; human gut
892
978
+
Leu
CAG
[ENA]
¢þ
>WENV182851860
OKLS01000565
[OKLS] human gut metagenome; human gut
954
881
-
Phe
GAA
[ENA]
¢þ
>WENV182851879
OKLS01002333
[OKLS] human gut metagenome; human gut
1017
1099
+
Leu
TAG
[ENA]
¢þ
>WENV182851881
OKLS01002740
[OKLS] human gut metagenome; human gut
1047
973
-
Ala
TGC
[ENA]
¢þ
>WENV182851877
OKLS01001981
[OKLS] human gut metagenome; human gut
1178
1263
+
Ser
TGA
[ENA]
¢þ
>WENV182851863
OKLS01000889
[OKLS] human gut metagenome; human gut
1211
1284
+
Trp
CCA
[ENA]
¢þ
>WENV182851878
OKLS01002183
[OKLS] human gut metagenome; human gut
1232
1160
-
Arg
CCT
[ENA]
¢þ
>WENV182851862
OKLS01000576
[OKLS] human gut metagenome; human gut
1360
1445
+
Ser
TGA
[ENA]
¢þ
>WENV182851875
OKLS01001899
[OKLS] human gut metagenome; human gut
1415
1340
-
Pro
GGG
[ENA]
¢þ
>WENV182851864
OKLS01000892
[OKLS] human gut metagenome; human gut
1522
1598
+
Asp
GTC
[ENA]
¢þ
>WENV182851854
OKLS01000182
[OKLS] human gut metagenome; human gut
2816
2889
+
Thr
CGT
[ENA]
¢þ
>WENV182851850
OKLS01000037
[OKLS] human gut metagenome; human gut
3492
3418
-
Glu
TTC
[ENA]
¢þ
>WENV182851851
OKLS01000039
[OKLS] human gut metagenome; human gut
6196
6267
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK