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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKLT] human gut metagenome; human gut
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182852007
OKLT01001168
[OKLT] human gut metagenome; human gut
46
136
+
Ser
GGA
[ENA]
¢þ
>WENV182851995
OKLT01000079
[OKLT] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182851974
OKLT01000044
[OKLT] human gut metagenome; human gut
59
134
+
Asn
GTT
[ENA]
¢þ
>WENV182851956
OKLT01000030
[OKLT] human gut metagenome; human gut
63
138
+
Trp
CCA
[ENA]
¢þ
>WENV182851979
OKLT01000045
[OKLT] human gut metagenome; human gut
79
4
-
Val
TAC
[ENA]
¢þ
>WENV182851981
OKLT01000072
[OKLT] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¢þ
>WENV182852013
OKLT01001317
[OKLT] human gut metagenome; human gut
132
56
-
Asp
GTC
[ENA]
¢þ
>WENV182851996
OKLT01000079
[OKLT] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182851955
OKLT01000023
[OKLT] human gut metagenome; human gut
194
118
-
Arg
ACG
[ENA]
¢þ
>WENV182851978
OKLT01000045
[OKLT] human gut metagenome; human gut
201
126
-
Val
TAC
[ENA]
¢þ
>WENV182851982
OKLT01000072
[OKLT] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¢þ
>WENV182851997
OKLT01000079
[OKLT] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182852012
OKLT01001317
[OKLT] human gut metagenome; human gut
245
170
-
fMet
CAT
[ENA]
¢þ
>WENV182851954
OKLT01000023
[OKLT] human gut metagenome; human gut
290
198
-
Ser
GCT
[ENA]
¢þ
>WENV182851983
OKLT01000072
[OKLT] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¢þ
>WENV182851998
OKLT01000079
[OKLT] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182852006
OKLT01000910
[OKLT] human gut metagenome; human gut
341
269
-
Asp
GTC
[ENA]
¢þ
>WENV182852011
OKLT01001317
[OKLT] human gut metagenome; human gut
367
278
-
Ser
TGA
[ENA]
¢þ
>WENV182851984
OKLT01000072
[OKLT] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¢þ
>WENV182851999
OKLT01000079
[OKLT] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182852005
OKLT01000910
[OKLT] human gut metagenome; human gut
429
356
-
fMet
CAT
[ENA]
¢þ
>WENV182852010
OKLT01001317
[OKLT] human gut metagenome; human gut
475
400
-
Ile2
CAT
[ENA]
¢þ
>WENV182852000
OKLT01000079
[OKLT] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182851985
OKLT01000072
[OKLT] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>WENV182852014
OKLT01001767
[OKLT] human gut metagenome; human gut
515
588
+
Gly
GCC
[ENA]
¢þ
>WENV182852009
OKLT01001317
[OKLT] human gut metagenome; human gut
569
494
-
Met
CAT
[ENA]
¢þ
>WENV182851986
OKLT01000072
[OKLT] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¢þ
>WENV182852008
OKLT01001317
[OKLT] human gut metagenome; human gut
664
590
-
Ala
TGC
[ENA]
¢þ
>WENV182852001
OKLT01000079
[OKLT] human gut metagenome; human gut
667
740
+
Pro
TGG
[ENA]
¢þ
>WENV182851987
OKLT01000072
[OKLT] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¢þ
>WENV182851988
OKLT01000072
[OKLT] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¢þ
>WENV182851989
OKLT01000072
[OKLT] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¢þ
>WENV182851990
OKLT01000072
[OKLT] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¢þ
>WENV182851991
OKLT01000072
[OKLT] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¢þ
>WENV182852002
OKLT01000090
[OKLT] human gut metagenome; human gut
1226
1150
-
Arg
TCT
[ENA]
¢þ
>WENV182852004
OKLT01000098
[OKLT] human gut metagenome; human gut
2803
2727
-
Arg
TCT
[ENA]
¢þ
>WENV182851976
OKLT01000045
[OKLT] human gut metagenome; human gut
2900
2975
+
Ala
GGC
[ENA]
¢þ
>WENV182852003
OKLT01000098
[OKLT] human gut metagenome; human gut
2979
2904
-
Ile2
CAT
[ENA]
¢þ
>WENV182851977
OKLT01000045
[OKLT] human gut metagenome; human gut
3015
3090
+
Ala
GGC
[ENA]
¢þ
>WENV182851970
OKLT01000040
[OKLT] human gut metagenome; human gut
7867
7953
+
Leu
CAG
[ENA]
¢þ
>WENV182851971
OKLT01000040
[OKLT] human gut metagenome; human gut
7982
8068
+
Leu
CAG
[ENA]
¢þ
>WENV182851972
OKLT01000040
[OKLT] human gut metagenome; human gut
8103
8189
+
Leu
CAG
[ENA]
¢þ
>WENV182851918
OKLT01000002
[OKLT] human gut metagenome; human gut
10891
10817
-
Arg
CCT
[ENA]
¢þ
>WENV182851929
OKLT01000006
[OKLT] human gut metagenome; human gut
11367
11283
-
Leu
CAA
[ENA]
¢þ
>WENV182851980
OKLT01000070
[OKLT] human gut metagenome; human gut
12039
12115
+
Pro
CGG
[ENA]
¢þ
>WENV182851994
OKLT01000073
[OKLT] human gut metagenome; human gut
16527
16453
-
Gly
TCC
[ENA]
¢þ
>WENV182851993
OKLT01000073
[OKLT] human gut metagenome; human gut
16606
16531
-
Thr
TGT
[ENA]
¢þ
>WENV182851992
OKLT01000073
[OKLT] human gut metagenome; human gut
16762
16687
-
Ile2
CAT
[ENA]
¢þ
>WENV182851969
OKLT01000037
[OKLT] human gut metagenome; human gut
21293
21218
-
Asn
GTT
[ENA]
¢þ
>WENV182851968
OKLT01000037
[OKLT] human gut metagenome; human gut
23702
23627
-
Asn
GTT
[ENA]
¢þ
>WENV182851965
OKLT01000037
[OKLT] human gut metagenome; human gut
25451
25526
+
Asn
GTT
[ENA]
¢þ
>WENV182851931
OKLT01000008
[OKLT] human gut metagenome; human gut
33115
33191
+
Val
GAC
[ENA]
¢þ
>WENV182851932
OKLT01000008
[OKLT] human gut metagenome; human gut
33196
33272
+
Val
GAC
[ENA]
¢þ
>WENV182851975
OKLT01000044
[OKLT] human gut metagenome; human gut
34294
34383
+
Ser
CGA
[ENA]
¢þ
>WENV182851957
OKLT01000030
[OKLT] human gut metagenome; human gut
34607
34683
+
Arg
CCG
[ENA]
¢þ
>WENV182851958
OKLT01000030
[OKLT] human gut metagenome; human gut
34742
34817
+
His
GTG
[ENA]
¢þ
>WENV182851959
OKLT01000030
[OKLT] human gut metagenome; human gut
34838
34924
+
Leu
CAG
[ENA]
¢þ
>WENV182851960
OKLT01000030
[OKLT] human gut metagenome; human gut
34967
35043
+
Pro
TGG
[ENA]
¢þ
>WENV182851949
OKLT01000020
[OKLT] human gut metagenome; human gut
55659
55583
-
fMet
CAT
[ENA]
¢þ
>WENV182851973
OKLT01000042
[OKLT] human gut metagenome; human gut
56034
55958
-
Arg
ACG
[ENA]
¢þ
>WENV182851945
OKLT01000016
[OKLT] human gut metagenome; human gut
56469
56396
-
Gly
CCC
[ENA]
¢þ
>WENV182851964
OKLT01000035
[OKLT] human gut metagenome; human gut
59312
59385
+
Arg
CCG
[ENA]
¢þ
>WENV182851948
OKLT01000020
[OKLT] human gut metagenome; human gut
59526
59440
-
Leu
GAG
[ENA]
¢þ
>WENV182851967
OKLT01000037
[OKLT] human gut metagenome; human gut
65418
65343
-
Asn
GTT
[ENA]
¢þ
>WENV182851966
OKLT01000037
[OKLT] human gut metagenome; human gut
66410
66499
+
Ser
CGA
[ENA]
¢þ
>WENV182851938
OKLT01000014
[OKLT] human gut metagenome; human gut
86080
86156
+
Met
CAT
[ENA]
¢þ
>WENV182851939
OKLT01000014
[OKLT] human gut metagenome; human gut
86167
86251
+
Leu
TAG
[ENA]
¢þ
>WENV182851940
OKLT01000014
[OKLT] human gut metagenome; human gut
86275
86349
+
Gln
TTG
[ENA]
¢þ
>WENV182851941
OKLT01000014
[OKLT] human gut metagenome; human gut
86384
86458
+
Gln
TTG
[ENA]
¢þ
>WENV182851942
OKLT01000014
[OKLT] human gut metagenome; human gut
86474
86550
+
Met
CAT
[ENA]
¢þ
>WENV182851943
OKLT01000014
[OKLT] human gut metagenome; human gut
86599
86673
+
Gln
CTG
[ENA]
¢þ
>WENV182851963
OKLT01000032
[OKLT] human gut metagenome; human gut
87118
87032
-
Leu
TAA
[ENA]
¢þ
>WENV182851962
OKLT01000032
[OKLT] human gut metagenome; human gut
87204
87131
-
Cys
GCA
[ENA]
¢þ
>WENV182851961
OKLT01000032
[OKLT] human gut metagenome; human gut
87333
87258
-
Gly
GCC
[ENA]
¢þ
>WENV182851936
OKLT01000010
[OKLT] human gut metagenome; human gut
117243
117172
-
Trp
CCA
[ENA]
¢þ
>WENV182851928
OKLT01000006
[OKLT] human gut metagenome; human gut
117806
117731
-
Gly
GCC
[ENA]
¢þ
>WENV182851927
OKLT01000006
[OKLT] human gut metagenome; human gut
117917
117842
-
Gly
GCC
[ENA]
¢þ
>WENV182851926
OKLT01000006
[OKLT] human gut metagenome; human gut
118028
117953
-
Gly
GCC
[ENA]
¢þ
>WENV182851930
OKLT01000007
[OKLT] human gut metagenome; human gut
118901
118995
+
SeC
TCA
[ENA]
¢þ
>WENV182851951
OKLT01000023
[OKLT] human gut metagenome; human gut
124277
124353
+
fMet
CAT
[ENA]
¢þ
>WENV182851952
OKLT01000023
[OKLT] human gut metagenome; human gut
124387
124463
+
fMet
CAT
[ENA]
¢þ
>WENV182851953
OKLT01000023
[OKLT] human gut metagenome; human gut
124497
124573
+
fMet
CAT
[ENA]
¢þ
>WENV182851947
OKLT01000018
[OKLT] human gut metagenome; human gut
128230
128146
-
Tyr
GTA
[ENA]
¢þ
>WENV182851934
OKLT01000009
[OKLT] human gut metagenome; human gut
132121
132046
-
Arg
TCT
[ENA]
¢þ
>WENV182851924
OKLT01000005
[OKLT] human gut metagenome; human gut
132535
132607
+
Thr
CGT
[ENA]
¢þ
>WENV182851923
OKLT01000004
[OKLT] human gut metagenome; human gut
139542
139455
-
Ser
TGA
[ENA]
¢þ
>WENV182851946
OKLT01000017
[OKLT] human gut metagenome; human gut
141661
141574
-
Ser
GGA
[ENA]
¢þ
>WENV182851925
OKLT01000006
[OKLT] human gut metagenome; human gut
147186
147261
+
Phe
GAA
[ENA]
¢þ
>WENV182851950
OKLT01000021
[OKLT] human gut metagenome; human gut
152750
152824
+
Lys
CTT
[ENA]
¢þ
>WENV182851937
OKLT01000011
[OKLT] human gut metagenome; human gut
164656
164731
+
Ile2
CAT
[ENA]
¢þ
>WENV182851944
OKLT01000016
[OKLT] human gut metagenome; human gut
170329
170404
+
Phe
GAA
[ENA]
¢þ
>WENV182851935
OKLT01000010
[OKLT] human gut metagenome; human gut
171242
171314
+
Thr
GGT
[ENA]
¢þ
>WENV182851917
OKLT01000002
[OKLT] human gut metagenome; human gut
180973
180897
-
Pro
GGG
[ENA]
¢þ
>WENV182851933
OKLT01000009
[OKLT] human gut metagenome; human gut
181460
181535
+
Arg
CCT
[ENA]
¢þ
>WENV182851922
OKLT01000004
[OKLT] human gut metagenome; human gut
191554
191467
-
Ser
GGA
[ENA]
¢þ
>WENV182851921
OKLT01000003
[OKLT] human gut metagenome; human gut
238968
238893
-
Thr
CGT
[ENA]
¢þ
>WENV182851920
OKLT01000003
[OKLT] human gut metagenome; human gut
299497
299421
-
Asp
GTC
[ENA]
¢þ
>WENV182851919
OKLT01000003
[OKLT] human gut metagenome; human gut
307722
307646
-
Asp
GTC
[ENA]
¢þ
>WENV182851916
OKLT01000001
[OKLT] human gut metagenome; human gut
418463
418390
-
Gln
TTG
[ENA]
¢þ
>WENV182851915
OKLT01000001
[OKLT] human gut metagenome; human gut
418553
418471
-
Tyr
GTA
[ENA]
¢þ
>WENV182851914
OKLT01000001
[OKLT] human gut metagenome; human gut
429884
429798
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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