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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKLV] human gut metagenome; human gut
HIT:
59 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182852080
OKLV01000034
[OKLV] human gut metagenome; human gut
144
70
-
Gln
TTG
[ENA]
¢þ
>WENV182852093
OKLV01000139
[OKLV] human gut metagenome; human gut
150
58
-
Ser
GCT
[ENA]
¢þ
>WENV182852079
OKLV01000034
[OKLV] human gut metagenome; human gut
252
168
-
Leu
TAG
[ENA]
¢þ
>WENV182852078
OKLV01000034
[OKLV] human gut metagenome; human gut
338
262
-
Met
CAT
[ENA]
¢þ
>WENV182852097
OKLV01000149
[OKLV] human gut metagenome; human gut
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182852098
OKLV01000159
[OKLV] human gut metagenome; human gut
441
368
-
Thr
TGT
[ENA]
¢þ
>WENV182852096
OKLV01000149
[OKLV] human gut metagenome; human gut
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182852091
OKLV01000099
[OKLV] human gut metagenome; human gut
650
726
+
Val
GAC
[ENA]
¢þ
>WENV182852095
OKLV01000149
[OKLV] human gut metagenome; human gut
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182852102
OKLV01001045
[OKLV] human gut metagenome; human gut
674
598
-
Asp
GTC
[ENA]
¢þ
>WENV182852101
OKLV01000984
[OKLV] human gut metagenome; human gut
713
789
+
Arg
TCT
[ENA]
¢þ
>WENV182852092
OKLV01000099
[OKLV] human gut metagenome; human gut
731
807
+
Val
GAC
[ENA]
¢þ
>WENV182852094
OKLV01000149
[OKLV] human gut metagenome; human gut
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182852100
OKLV01000678
[OKLV] human gut metagenome; human gut
1364
1439
+
Glu
TTC
[ENA]
¢þ
>WENV182852090
OKLV01000092
[OKLV] human gut metagenome; human gut
3284
3208
-
Asp
GTC
[ENA]
¢þ
>WENV182852099
OKLV01000177
[OKLV] human gut metagenome; human gut
3418
3343
-
Trp
CCA
[ENA]
¢þ
>WENV182852089
OKLV01000082
[OKLV] human gut metagenome; human gut
4556
4480
-
Arg
TCT
[ENA]
¢þ
>WENV182852088
OKLV01000082
[OKLV] human gut metagenome; human gut
4646
4570
-
Arg
TCG
[ENA]
¢þ
>WENV182852087
OKLV01000082
[OKLV] human gut metagenome; human gut
4729
4654
-
Ile2
CAT
[ENA]
¢þ
>WENV182852083
OKLV01000040
[OKLV] human gut metagenome; human gut
8207
8291
+
Tyr
GTA
[ENA]
¢þ
>WENV182852058
OKLV01000008
[OKLV] human gut metagenome; human gut
9024
9108
+
Leu
CAA
[ENA]
¢þ
>WENV182852072
OKLV01000017
[OKLV] human gut metagenome; human gut
10734
10647
-
Ser
GGA
[ENA]
¢þ
>WENV182852082
OKLV01000036
[OKLV] human gut metagenome; human gut
12083
12008
-
Gly
GCC
[ENA]
¢þ
>WENV182852071
OKLV01000016
[OKLV] human gut metagenome; human gut
13271
13365
+
SeC
TCA
[ENA]
¢þ
>WENV182852086
OKLV01000071
[OKLV] human gut metagenome; human gut
14460
14536
+
Pro
CGG
[ENA]
¢þ
>WENV182852073
OKLV01000019
[OKLV] human gut metagenome; human gut
16012
15925
-
Ser
GGA
[ENA]
¢þ
>WENV182852084
OKLV01000046
[OKLV] human gut metagenome; human gut
16559
16483
-
fMet
CAT
[ENA]
¢þ
>WENV182852085
OKLV01000049
[OKLV] human gut metagenome; human gut
32971
33044
+
Gly
CCC
[ENA]
¢þ
>WENV182852075
OKLV01000023
[OKLV] human gut metagenome; human gut
33403
33328
-
Phe
GAA
[ENA]
¢þ
>WENV182852065
OKLV01000011
[OKLV] human gut metagenome; human gut
33963
33888
-
Lys
TTT
[ENA]
¢þ
>WENV182852064
OKLV01000011
[OKLV] human gut metagenome; human gut
34043
33968
-
Val
TAC
[ENA]
¢þ
>WENV182852074
OKLV01000020
[OKLV] human gut metagenome; human gut
35779
35692
-
Ser
TGA
[ENA]
¢þ
>WENV182852062
OKLV01000011
[OKLV] human gut metagenome; human gut
36742
36817
+
Ala
GGC
[ENA]
¢þ
>WENV182852057
OKLV01000005
[OKLV] human gut metagenome; human gut
37333
37257
-
Arg
TCT
[ENA]
¢þ
>WENV182852081
OKLV01000036
[OKLV] human gut metagenome; human gut
40949
41024
+
Phe
GAA
[ENA]
¢þ
>WENV182852070
OKLV01000013
[OKLV] human gut metagenome; human gut
45149
45074
-
Thr
CGT
[ENA]
¢þ
>WENV182852077
OKLV01000025
[OKLV] human gut metagenome; human gut
57891
57815
-
Arg
ACG
[ENA]
¢þ
>WENV182852076
OKLV01000025
[OKLV] human gut metagenome; human gut
58032
57956
-
Arg
ACG
[ENA]
¢þ
>WENV182852069
OKLV01000012
[OKLV] human gut metagenome; human gut
78606
78530
-
Pro
TGG
[ENA]
¢þ
>WENV182852068
OKLV01000012
[OKLV] human gut metagenome; human gut
78735
78649
-
Leu
CAG
[ENA]
¢þ
>WENV182852067
OKLV01000012
[OKLV] human gut metagenome; human gut
78831
78756
-
His
GTG
[ENA]
¢þ
>WENV182852066
OKLV01000012
[OKLV] human gut metagenome; human gut
78966
78890
-
Arg
CCG
[ENA]
¢þ
>WENV182852059
OKLV01000008
[OKLV] human gut metagenome; human gut
88834
88748
-
Leu
CAG
[ENA]
¢þ
>WENV182852063
OKLV01000011
[OKLV] human gut metagenome; human gut
89167
89093
-
Arg
CCT
[ENA]
¢þ
>WENV182852053
OKLV01000003
[OKLV] human gut metagenome; human gut
99316
99402
+
Leu
GAG
[ENA]
¢þ
>WENV182852061
OKLV01000009
[OKLV] human gut metagenome; human gut
100566
100492
-
Gln
CTG
[ENA]
¢þ
>WENV182852060
OKLV01000009
[OKLV] human gut metagenome; human gut
100691
100615
-
Met
CAT
[ENA]
¢þ
>WENV182852054
OKLV01000003
[OKLV] human gut metagenome; human gut
103183
103259
+
fMet
CAT
[ENA]
¢þ
>WENV182852056
OKLV01000004
[OKLV] human gut metagenome; human gut
167287
167363
+
Arg
TCT
[ENA]
¢þ
>WENV182852052
OKLV01000002
[OKLV] human gut metagenome; human gut
169439
169515
+
Pro
GGG
[ENA]
¢þ
>WENV182852055
OKLV01000003
[OKLV] human gut metagenome; human gut
198909
198834
-
Ile2
CAT
[ENA]
¢þ
>WENV182852051
OKLV01000001
[OKLV] human gut metagenome; human gut
228051
227965
-
Leu
TAA
[ENA]
¢þ
>WENV182852050
OKLV01000001
[OKLV] human gut metagenome; human gut
228137
228064
-
Cys
GCA
[ENA]
¢þ
>WENV182852049
OKLV01000001
[OKLV] human gut metagenome; human gut
228266
228191
-
Gly
GCC
[ENA]
¢þ
>WENV182852048
OKLV01000001
[OKLV] human gut metagenome; human gut
281184
281095
-
Ser
CGA
[ENA]
¢þ
>WENV182852044
OKLV01000001
[OKLV] human gut metagenome; human gut
282176
282251
+
Asn
GTT
[ENA]
¢þ
>WENV182852047
OKLV01000001
[OKLV] human gut metagenome; human gut
322141
322066
-
Asn
GTT
[ENA]
¢þ
>WENV182852046
OKLV01000001
[OKLV] human gut metagenome; human gut
324550
324475
-
Asn
GTT
[ENA]
¢þ
>WENV182852045
OKLV01000001
[OKLV] human gut metagenome; human gut
326299
326374
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK