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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKME] human gut metagenome; human gut
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182852957
OKME01003047
[OKME] human gut metagenome; human gut
28
99
+
Gln
TTG
[ENA]
¢þ
>WENV182852961
OKME01003649
[OKME] human gut metagenome; human gut
37
110
+
Ile
GAT
[ENA]
¢þ
>WENV182852954
OKME01002402
[OKME] human gut metagenome; human gut
88
13
-
Val
TAC
[ENA]
¢þ
>WENV182852947
OKME01001131
[OKME] human gut metagenome; human gut
104
178
+
Gln
CTG
[ENA]
¢þ
>WENV182852950
OKME01002199
[OKME] human gut metagenome; human gut
155
80
-
Pro
GGG
[ENA]
¢þ
>WENV182852951
OKME01002325
[OKME] human gut metagenome; human gut
182
109
-
fMet
CAT
[ENA]
¢þ
>WENV182852959
OKME01003287
[OKME] human gut metagenome; human gut
189
118
-
Gly
TCC
[ENA]
¢þ
>WENV182852953
OKME01002402
[OKME] human gut metagenome; human gut
199
124
-
Lys
TTT
[ENA]
¢þ
>WENV182852960
OKME01003614
[OKME] human gut metagenome; human gut
254
180
-
Asn
GTT
[ENA]
¢þ
>WENV182852958
OKME01003287
[OKME] human gut metagenome; human gut
290
216
-
Phe
GAA
[ENA]
¢þ
>WENV182852946
OKME01000201
[OKME] human gut metagenome; human gut
348
423
+
Phe
GAA
[ENA]
¢þ
>WENV182852949
OKME01001757
[OKME] human gut metagenome; human gut
410
484
+
Thr
TGT
[ENA]
¢þ
>WENV182852956
OKME01002596
[OKME] human gut metagenome; human gut
454
380
-
Gly
TCC
[ENA]
¢þ
>WENV182852944
OKME01000029
[OKME] human gut metagenome; human gut
525
452
-
Trp
CCA
[ENA]
¢þ
>WENV182852955
OKME01002596
[OKME] human gut metagenome; human gut
533
458
-
Thr
TGT
[ENA]
¢þ
>WENV182852952
OKME01002391
[OKME] human gut metagenome; human gut
550
474
-
Arg
TCT
[ENA]
¢þ
>WENV182852948
OKME01001461
[OKME] human gut metagenome; human gut
555
470
-
Ser
TGA
[ENA]
¢þ
>WENV182852945
OKME01000071
[OKME] human gut metagenome; human gut
1252
1328
+
Asp
GTC
[ENA]
¢þ
>WENV182852942
OKME01000005
[OKME] human gut metagenome; human gut
2396
2472
+
Ile
GAT
[ENA]
¢þ
>WENV182852943
OKME01000005
[OKME] human gut metagenome; human gut
2515
2590
+
Ala
TGC
[ENA]
¢þ
>WENV182852941
OKME01000002
[OKME] human gut metagenome; human gut
3616
3542
-
Ala
TGC
[ENA]
¢þ
>WENV182852940
OKME01000002
[OKME] human gut metagenome; human gut
3721
3645
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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