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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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|
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HOW TO USE
tRNA gene List
[OKMF] human gut metagenome; human gut
HIT:
84 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182853039
OKMF01001979
[OKMF] human gut metagenome; human gut
1
74
+
Glu
TTC
[ENA]
¢þ
>WENV182853038
OKMF01001335
[OKMF] human gut metagenome; human gut
73
146
+
Gly
TCC
[ENA]
¢þ
>WENV182853040
OKMF01001979
[OKMF] human gut metagenome; human gut
86
175
+
Ser
TGA
[ENA]
¢þ
>WENV182853037
OKMF01000541
[OKMF] human gut metagenome; human gut
100
171
+
Trp
CCA
[ENA]
¢þ
>WENV182852996
OKMF01000024
[OKMF] human gut metagenome; human gut
100
175
+
Trp
CCA
[ENA]
¢þ
>WENV182853019
OKMF01000119
[OKMF] human gut metagenome; human gut
132
58
-
Gly
TCC
[ENA]
¢þ
>WENV182852967
OKMF01000001
[OKMF] human gut metagenome; human gut
135
60
-
Val
TAC
[ENA]
¢þ
>WENV182853015
OKMF01000064
[OKMF] human gut metagenome; human gut
182
106
-
Pro
CGG
[ENA]
¢þ
>WENV182853041
OKMF01001979
[OKMF] human gut metagenome; human gut
208
283
+
fMet
CAT
[ENA]
¢þ
>WENV182852966
OKMF01000001
[OKMF] human gut metagenome; human gut
257
182
-
Val
TAC
[ENA]
¢þ
>WENV182853045
OKMF01002626
[OKMF] human gut metagenome; human gut
306
379
+
Gly
TCC
[ENA]
¢þ
>WENV182853042
OKMF01001979
[OKMF] human gut metagenome; human gut
321
397
+
Asp
GTC
[ENA]
¢þ
>WENV182853018
OKMF01000119
[OKMF] human gut metagenome; human gut
332
248
-
Tyr
GTA
[ENA]
¢þ
>WENV182853043
OKMF01001979
[OKMF] human gut metagenome; human gut
399
469
+
Gly
TCC
[ENA]
¢þ
>WENV182853017
OKMF01000119
[OKMF] human gut metagenome; human gut
418
343
-
Thr
TGT
[ENA]
¢þ
>WENV182853044
OKMF01001979
[OKMF] human gut metagenome; human gut
483
556
+
Ile
GAT
[ENA]
¢þ
>WENV182853021
OKMF01000218
[OKMF] human gut metagenome; human gut
581
656
+
Val
TAC
[ENA]
¢þ
>WENV182853022
OKMF01000218
[OKMF] human gut metagenome; human gut
673
748
+
Thr
TGT
[ENA]
¢þ
>WENV182853023
OKMF01000218
[OKMF] human gut metagenome; human gut
753
835
+
Tyr
GTA
[ENA]
¢þ
>WENV182853024
OKMF01000218
[OKMF] human gut metagenome; human gut
850
923
+
Trp
CCA
[ENA]
¢þ
>WENV182853025
OKMF01000218
[OKMF] human gut metagenome; human gut
926
999
+
His
GTG
[ENA]
¢þ
>WENV182853026
OKMF01000218
[OKMF] human gut metagenome; human gut
1010
1081
+
Gln
TTG
[ENA]
¢þ
>WENV182853027
OKMF01000218
[OKMF] human gut metagenome; human gut
1087
1160
+
Cys
GCA
[ENA]
¢þ
>WENV182853028
OKMF01000218
[OKMF] human gut metagenome; human gut
1371
1452
+
Leu
TAG
[ENA]
¢þ
>WENV182853029
OKMF01000218
[OKMF] human gut metagenome; human gut
1459
1534
+
Thr
TGT
[ENA]
¢þ
>WENV182853030
OKMF01000218
[OKMF] human gut metagenome; human gut
1539
1610
+
Gly
GCC
[ENA]
¢þ
>WENV182853031
OKMF01000218
[OKMF] human gut metagenome; human gut
1626
1711
+
Leu
TAA
[ENA]
¢þ
>WENV182853032
OKMF01000218
[OKMF] human gut metagenome; human gut
1726
1799
+
Arg
ACG
[ENA]
¢þ
>WENV182853033
OKMF01000218
[OKMF] human gut metagenome; human gut
1811
1884
+
Pro
TGG
[ENA]
¢þ
>WENV182853034
OKMF01000218
[OKMF] human gut metagenome; human gut
1897
1971
+
Ala
TGC
[ENA]
¢þ
>WENV182853020
OKMF01000216
[OKMF] human gut metagenome; human gut
1931
2007
+
Ile
GAT
[ENA]
¢þ
>WENV182853035
OKMF01000219
[OKMF] human gut metagenome; human gut
2122
2197
+
Asn
GTT
[ENA]
¢þ
>WENV182852987
OKMF01000014
[OKMF] human gut metagenome; human gut
2158
2250
+
Ser
GCT
[ENA]
¢þ
>WENV182853036
OKMF01000219
[OKMF] human gut metagenome; human gut
2239
2329
+
Ser
GGA
[ENA]
¢þ
>WENV182852988
OKMF01000014
[OKMF] human gut metagenome; human gut
2255
2331
+
Arg
ACG
[ENA]
¢þ
>WENV182852989
OKMF01000014
[OKMF] human gut metagenome; human gut
2614
2690
+
Arg
ACG
[ENA]
¢þ
>WENV182852990
OKMF01000014
[OKMF] human gut metagenome; human gut
2752
2828
+
Arg
ACG
[ENA]
¢þ
>WENV182852962
OKMF01000001
[OKMF] human gut metagenome; human gut
2957
3032
+
Ala
GGC
[ENA]
¢þ
>WENV182852991
OKMF01000014
[OKMF] human gut metagenome; human gut
3057
3133
+
Arg
ACG
[ENA]
¢þ
>WENV182852963
OKMF01000001
[OKMF] human gut metagenome; human gut
3074
3149
+
Ala
GGC
[ENA]
¢þ
>WENV182853016
OKMF01000116
[OKMF] human gut metagenome; human gut
4018
3931
-
Ser
GGA
[ENA]
¢þ
>WENV182853002
OKMF01000025
[OKMF] human gut metagenome; human gut
6465
6379
-
Leu
CAG
[ENA]
¢þ
>WENV182853001
OKMF01000025
[OKMF] human gut metagenome; human gut
6580
6494
-
Leu
CAG
[ENA]
¢þ
>WENV182853014
OKMF01000053
[OKMF] human gut metagenome; human gut
7014
7101
+
Ser
TGA
[ENA]
¢þ
>WENV182852980
OKMF01000005
[OKMF] human gut metagenome; human gut
8420
8336
-
Tyr
GTA
[ENA]
¢þ
>WENV182852979
OKMF01000005
[OKMF] human gut metagenome; human gut
8720
8636
-
Tyr
GTA
[ENA]
¢þ
>WENV182853005
OKMF01000043
[OKMF] human gut metagenome; human gut
8730
8824
+
SeC
TCA
[ENA]
¢þ
>WENV182852965
OKMF01000001
[OKMF] human gut metagenome; human gut
23550
23476
-
Arg
CCT
[ENA]
¢þ
>WENV182852982
OKMF01000008
[OKMF] human gut metagenome; human gut
25991
25916
-
Thr
TGT
[ENA]
¢þ
>WENV182853013
OKMF01000051
[OKMF] human gut metagenome; human gut
31595
31521
-
Gln
CTG
[ENA]
¢þ
>WENV182853012
OKMF01000051
[OKMF] human gut metagenome; human gut
31745
31671
-
Gln
CTG
[ENA]
¢þ
>WENV182853011
OKMF01000051
[OKMF] human gut metagenome; human gut
31868
31792
-
Met
CAT
[ENA]
¢þ
>WENV182853010
OKMF01000051
[OKMF] human gut metagenome; human gut
31966
31892
-
Gln
TTG
[ENA]
¢þ
>WENV182853009
OKMF01000051
[OKMF] human gut metagenome; human gut
32077
32003
-
Gln
TTG
[ENA]
¢þ
>WENV182853008
OKMF01000051
[OKMF] human gut metagenome; human gut
32185
32101
-
Leu
TAG
[ENA]
¢þ
>WENV182853007
OKMF01000051
[OKMF] human gut metagenome; human gut
32270
32194
-
Met
CAT
[ENA]
¢þ
>WENV182852997
OKMF01000024
[OKMF] human gut metagenome; human gut
38204
38280
+
Arg
CCG
[ENA]
¢þ
>WENV182852998
OKMF01000024
[OKMF] human gut metagenome; human gut
38336
38411
+
His
GTG
[ENA]
¢þ
>WENV182852999
OKMF01000024
[OKMF] human gut metagenome; human gut
38435
38521
+
Leu
CAG
[ENA]
¢þ
>WENV182853000
OKMF01000024
[OKMF] human gut metagenome; human gut
38564
38640
+
Pro
TGG
[ENA]
¢þ
>WENV182852981
OKMF01000006
[OKMF] human gut metagenome; human gut
39537
39610
+
Gly
CCC
[ENA]
¢þ
>WENV182853006
OKMF01000046
[OKMF] human gut metagenome; human gut
42051
42126
+
Phe
GAA
[ENA]
¢þ
>WENV182852992
OKMF01000016
[OKMF] human gut metagenome; human gut
42724
42648
-
Arg
TCT
[ENA]
¢þ
>WENV182853004
OKMF01000042
[OKMF] human gut metagenome; human gut
47295
47220
-
Gly
GCC
[ENA]
¢þ
>WENV182852993
OKMF01000020
[OKMF] human gut metagenome; human gut
49915
50001
+
Leu
GAG
[ENA]
¢þ
>WENV182852994
OKMF01000020
[OKMF] human gut metagenome; human gut
53942
54018
+
fMet
CAT
[ENA]
¢þ
>WENV182853003
OKMF01000035
[OKMF] human gut metagenome; human gut
58914
58989
+
Lys
TTT
[ENA]
¢þ
>WENV182852984
OKMF01000009
[OKMF] human gut metagenome; human gut
81647
81572
-
Ile2
CAT
[ENA]
¢þ
>WENV182852985
OKMF01000012
[OKMF] human gut metagenome; human gut
83472
83548
+
Val
GAC
[ENA]
¢þ
>WENV182852986
OKMF01000012
[OKMF] human gut metagenome; human gut
83553
83629
+
Val
GAC
[ENA]
¢þ
>WENV182852995
OKMF01000021
[OKMF] human gut metagenome; human gut
85600
85684
+
Leu
CAA
[ENA]
¢þ
>WENV182852976
OKMF01000004
[OKMF] human gut metagenome; human gut
134768
134843
+
Thr
CGT
[ENA]
¢þ
>WENV182852983
OKMF01000009
[OKMF] human gut metagenome; human gut
147790
147715
-
Phe
GAA
[ENA]
¢þ
>WENV182852964
OKMF01000001
[OKMF] human gut metagenome; human gut
150698
150622
-
Pro
GGG
[ENA]
¢þ
>WENV182852975
OKMF01000003
[OKMF] human gut metagenome; human gut
167240
167154
-
Leu
TAA
[ENA]
¢þ
>WENV182852974
OKMF01000003
[OKMF] human gut metagenome; human gut
167327
167254
-
Cys
GCA
[ENA]
¢þ
>WENV182852973
OKMF01000003
[OKMF] human gut metagenome; human gut
167443
167368
-
Gly
GCC
[ENA]
¢þ
>WENV182852972
OKMF01000003
[OKMF] human gut metagenome; human gut
188644
188555
-
Ser
CGA
[ENA]
¢þ
>WENV182852968
OKMF01000003
[OKMF] human gut metagenome; human gut
189636
189711
+
Asn
GTT
[ENA]
¢þ
>WENV182852978
OKMF01000004
[OKMF] human gut metagenome; human gut
190759
190683
-
Asp
GTC
[ENA]
¢þ
>WENV182852977
OKMF01000004
[OKMF] human gut metagenome; human gut
200209
200133
-
Asp
GTC
[ENA]
¢þ
>WENV182852969
OKMF01000003
[OKMF] human gut metagenome; human gut
208162
208237
+
Asn
GTT
[ENA]
¢þ
>WENV182852971
OKMF01000003
[OKMF] human gut metagenome; human gut
228371
228296
-
Asn
GTT
[ENA]
¢þ
>WENV182852970
OKMF01000003
[OKMF] human gut metagenome; human gut
230130
230205
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK