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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKMJ] human gut metagenome; human gut
HIT:
83 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182853208
OKMJ01000480
[OKMJ] human gut metagenome; human gut
60
133
+
Gln
TTG
[ENA]
¢þ
>WENV182853177
OKMJ01000033
[OKMJ] human gut metagenome; human gut
100
170
+
Cys
GCA
[ENA]
¢þ
>WENV182853235
OKMJ01001708
[OKMJ] human gut metagenome; human gut
100
174
+
Gln
CTG
[ENA]
¢þ
>WENV182853196
OKMJ01000087
[OKMJ] human gut metagenome; human gut
138
63
-
Val
TAC
[ENA]
¢þ
>WENV182853256
OKMJ01005414
[OKMJ] human gut metagenome; human gut
140
214
+
Glu
TTC
[ENA]
¢þ
>WENV182853253
OKMJ01004971
[OKMJ] human gut metagenome; human gut
152
77
-
His
GTG
[ENA]
¢þ
>WENV182853257
OKMJ01005657
[OKMJ] human gut metagenome; human gut
177
102
-
Val
TAC
[ENA]
¢þ
>WENV182853178
OKMJ01000033
[OKMJ] human gut metagenome; human gut
190
276
+
Leu
CAA
[ENA]
¢þ
>WENV182853195
OKMJ01000087
[OKMJ] human gut metagenome; human gut
243
168
-
Lys
TTT
[ENA]
¢þ
>WENV182853213
OKMJ01000528
[OKMJ] human gut metagenome; human gut
271
182
-
Ser
CGA
[ENA]
¢þ
>WENV182853252
OKMJ01004971
[OKMJ] human gut metagenome; human gut
288
212
-
Arg
CCG
[ENA]
¢þ
>WENV182853194
OKMJ01000087
[OKMJ] human gut metagenome; human gut
326
251
-
Val
TAC
[ENA]
¢þ
>WENV182853179
OKMJ01000033
[OKMJ] human gut metagenome; human gut
337
410
+
His
GTG
[ENA]
¢þ
>WENV182853206
OKMJ01000429
[OKMJ] human gut metagenome; human gut
358
271
-
Ser
TGA
[ENA]
¢þ
>WENV182853243
OKMJ01002967
[OKMJ] human gut metagenome; human gut
359
448
+
Ser
CGA
[ENA]
¢þ
>WENV182853254
OKMJ01005087
[OKMJ] human gut metagenome; human gut
379
455
+
Arg
TCT
[ENA]
¢þ
>WENV182853249
OKMJ01003626
[OKMJ] human gut metagenome; human gut
383
456
+
Arg
CCG
[ENA]
¢þ
>WENV182853180
OKMJ01000033
[OKMJ] human gut metagenome; human gut
420
493
+
Gln
TTG
[ENA]
¢þ
>WENV182853255
OKMJ01005367
[OKMJ] human gut metagenome; human gut
436
530
+
SeC
TCA
[ENA]
¢þ
>WENV182853227
OKMJ01001038
[OKMJ] human gut metagenome; human gut
503
418
-
Leu
CAG
[ENA]
¢þ
>WENV182853237
OKMJ01001826
[OKMJ] human gut metagenome; human gut
506
430
-
Pro
CGG
[ENA]
¢þ
>WENV182853181
OKMJ01000033
[OKMJ] human gut metagenome; human gut
509
595
+
Leu
CAA
[ENA]
¢þ
>WENV182853228
OKMJ01001049
[OKMJ] human gut metagenome; human gut
519
447
-
Gln
CTG
[ENA]
¢þ
>WENV182853234
OKMJ01001563
[OKMJ] human gut metagenome; human gut
588
663
+
Ile2
CAT
[ENA]
¢þ
>WENV182853251
OKMJ01004653
[OKMJ] human gut metagenome; human gut
643
569
-
Lys
CTT
[ENA]
¢þ
>WENV182853198
OKMJ01000168
[OKMJ] human gut metagenome; human gut
688
604
-
Leu
GAG
[ENA]
¢þ
>WENV182853246
OKMJ01003147
[OKMJ] human gut metagenome; human gut
689
765
+
fMet
CAT
[ENA]
¢þ
>WENV182853247
OKMJ01003199
[OKMJ] human gut metagenome; human gut
699
624
-
Asn
GTT
[ENA]
¢þ
>WENV182853245
OKMJ01003016
[OKMJ] human gut metagenome; human gut
725
799
+
Arg
CCT
[ENA]
¢þ
>WENV182853222
OKMJ01000849
[OKMJ] human gut metagenome; human gut
744
819
+
Asn
GTT
[ENA]
¢þ
>WENV182853215
OKMJ01000606
[OKMJ] human gut metagenome; human gut
819
747
-
Thr
GGT
[ENA]
¢þ
>WENV182853238
OKMJ01001904
[OKMJ] human gut metagenome; human gut
833
759
-
Arg
TCT
[ENA]
¢þ
>WENV182853230
OKMJ01001183
[OKMJ] human gut metagenome; human gut
892
967
+
Asn
GTT
[ENA]
¢þ
>WENV182853214
OKMJ01000557
[OKMJ] human gut metagenome; human gut
939
1012
+
Gly
CCC
[ENA]
¢þ
>WENV182853250
OKMJ01003744
[OKMJ] human gut metagenome; human gut
1031
956
-
Glu
TTC
[ENA]
¢þ
>WENV182853201
OKMJ01000216
[OKMJ] human gut metagenome; human gut
1073
987
-
Leu
GAG
[ENA]
¢þ
>WENV182853248
OKMJ01003617
[OKMJ] human gut metagenome; human gut
1126
1050
-
Asp
GTC
[ENA]
¢þ
>WENV182853240
OKMJ01002466
[OKMJ] human gut metagenome; human gut
1164
1251
+
Ser
TGA
[ENA]
¢þ
>WENV182853241
OKMJ01002466
[OKMJ] human gut metagenome; human gut
1258
1333
+
Thr
TGT
[ENA]
¢þ
>WENV182853244
OKMJ01002993
[OKMJ] human gut metagenome; human gut
1395
1322
-
Gly
CCC
[ENA]
¢þ
>WENV182853221
OKMJ01000789
[OKMJ] human gut metagenome; human gut
1430
1336
-
SeC
TCA
[ENA]
¢þ
>WENV182853242
OKMJ01002863
[OKMJ] human gut metagenome; human gut
1484
1559
+
Phe
GAA
[ENA]
¢þ
>WENV182853239
OKMJ01002274
[OKMJ] human gut metagenome; human gut
1492
1405
-
Ser
CGA
[ENA]
¢þ
>WENV182853186
OKMJ01000037
[OKMJ] human gut metagenome; human gut
1514
1442
-
Thr
GGT
[ENA]
¢þ
>WENV182853229
OKMJ01001050
[OKMJ] human gut metagenome; human gut
1589
1664
+
Arg
TCT
[ENA]
¢þ
>WENV182853236
OKMJ01001804
[OKMJ] human gut metagenome; human gut
1705
1781
+
Pro
GGG
[ENA]
¢þ
>WENV182853209
OKMJ01000494
[OKMJ] human gut metagenome; human gut
1726
1801
+
Asn
GTT
[ENA]
¢þ
>WENV182853185
OKMJ01000037
[OKMJ] human gut metagenome; human gut
1727
1802
+
Asn
GTT
[ENA]
¢þ
>WENV182853226
OKMJ01000988
[OKMJ] human gut metagenome; human gut
2084
2168
+
Leu
CAA
[ENA]
¢þ
>WENV182853219
OKMJ01000752
[OKMJ] human gut metagenome; human gut
2307
2383
+
Arg
TCT
[ENA]
¢þ
>WENV182853220
OKMJ01000779
[OKMJ] human gut metagenome; human gut
2462
2537
+
Ile2
CAT
[ENA]
¢þ
>WENV182853231
OKMJ01001294
[OKMJ] human gut metagenome; human gut
2529
2453
-
Asp
GTC
[ENA]
¢þ
>WENV182853216
OKMJ01000687
[OKMJ] human gut metagenome; human gut
2602
2530
-
Lys
CTT
[ENA]
¢þ
>WENV182853192
OKMJ01000087
[OKMJ] human gut metagenome; human gut
2709
2784
+
Ala
GGC
[ENA]
¢þ
>WENV182853233
OKMJ01001442
[OKMJ] human gut metagenome; human gut
2792
2717
-
Thr
CGT
[ENA]
¢þ
>WENV182853193
OKMJ01000087
[OKMJ] human gut metagenome; human gut
2845
2920
+
Ala
GGC
[ENA]
¢þ
>WENV182853232
OKMJ01001321
[OKMJ] human gut metagenome; human gut
2874
2947
+
Arg
CCG
[ENA]
¢þ
>WENV182853210
OKMJ01000495
[OKMJ] human gut metagenome; human gut
3435
3510
+
Gly
GCC
[ENA]
¢þ
>WENV182853211
OKMJ01000495
[OKMJ] human gut metagenome; human gut
3577
3652
+
Gly
GCC
[ENA]
¢þ
>WENV182853212
OKMJ01000495
[OKMJ] human gut metagenome; human gut
3707
3782
+
Gly
GCC
[ENA]
¢þ
>WENV182853225
OKMJ01000948
[OKMJ] human gut metagenome; human gut
3923
3850
-
Pro
TGG
[ENA]
¢þ
>WENV182853218
OKMJ01000741
[OKMJ] human gut metagenome; human gut
3954
3878
-
fMet
CAT
[ENA]
¢þ
>WENV182853223
OKMJ01000943
[OKMJ] human gut metagenome; human gut
4011
3937
-
Gln
CTG
[ENA]
¢þ
>WENV182853224
OKMJ01000948
[OKMJ] human gut metagenome; human gut
4086
4013
-
Arg
ACG
[ENA]
¢þ
>WENV182853217
OKMJ01000741
[OKMJ] human gut metagenome; human gut
4101
4015
-
Leu
GAG
[ENA]
¢þ
>WENV182853207
OKMJ01000442
[OKMJ] human gut metagenome; human gut
4246
4172
-
Arg
CCT
[ENA]
¢þ
>WENV182853205
OKMJ01000348
[OKMJ] human gut metagenome; human gut
5607
5522
-
Leu
TAA
[ENA]
¢þ
>WENV182853204
OKMJ01000348
[OKMJ] human gut metagenome; human gut
5691
5618
-
Cys
GCA
[ENA]
¢þ
>WENV182853197
OKMJ01000101
[OKMJ] human gut metagenome; human gut
5814
5739
-
Arg
CCT
[ENA]
¢þ
>WENV182853200
OKMJ01000210
[OKMJ] human gut metagenome; human gut
6165
6095
-
Gly
CCC
[ENA]
¢þ
>WENV182853203
OKMJ01000348
[OKMJ] human gut metagenome; human gut
6441
6366
-
Gly
GCC
[ENA]
¢þ
>WENV182853202
OKMJ01000345
[OKMJ] human gut metagenome; human gut
7685
7609
-
Arg
ACG
[ENA]
¢þ
>WENV182853182
OKMJ01000036
[OKMJ] human gut metagenome; human gut
10105
10197
+
Ser
GCT
[ENA]
¢þ
>WENV182853183
OKMJ01000036
[OKMJ] human gut metagenome; human gut
10201
10277
+
Arg
ACG
[ENA]
¢þ
>WENV182853184
OKMJ01000036
[OKMJ] human gut metagenome; human gut
10336
10412
+
Arg
ACG
[ENA]
¢þ
>WENV182853187
OKMJ01000062
[OKMJ] human gut metagenome; human gut
10666
10591
-
Ile2
CAT
[ENA]
¢þ
>WENV182853199
OKMJ01000177
[OKMJ] human gut metagenome; human gut
10866
10791
-
Trp
CCA
[ENA]
¢þ
>WENV182853188
OKMJ01000066
[OKMJ] human gut metagenome; human gut
14561
14645
+
Tyr
GTA
[ENA]
¢þ
>WENV182853189
OKMJ01000066
[OKMJ] human gut metagenome; human gut
14742
14826
+
Tyr
GTA
[ENA]
¢þ
>WENV182853190
OKMJ01000066
[OKMJ] human gut metagenome; human gut
15025
15099
+
Gly
TCC
[ENA]
¢þ
>WENV182853191
OKMJ01000066
[OKMJ] human gut metagenome; human gut
15106
15181
+
Thr
GGT
[ENA]
¢þ
>WENV182853176
OKMJ01000007
[OKMJ] human gut metagenome; human gut
21844
21769
-
Arg
CCT
[ENA]
¢þ
>WENV182853175
OKMJ01000001
[OKMJ] human gut metagenome; human gut
30758
30830
+
Thr
CGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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