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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OKML] human gut metagenome; human gut
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182853531
OKML01001481
[OKML] human gut metagenome; human gut
2
77
+
Lys
TTT
[ENA]
¢þ
>WENV182853508
OKML01000389
[OKML] human gut metagenome; human gut
62
137
+
Thr
GGT
[ENA]
¢þ
>WENV182853519
OKML01000738
[OKML] human gut metagenome; human gut
78
3
-
Val
TAC
[ENA]
¢þ
>WENV182853513
OKML01000598
[OKML] human gut metagenome; human gut
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV182853511
OKML01000532
[OKML] human gut metagenome; human gut
105
181
+
Asp
GTC
[ENA]
¢þ
>WENV182853515
OKML01000625
[OKML] human gut metagenome; human gut
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV182853506
OKML01000266
[OKML] human gut metagenome; human gut
175
100
-
Ile2
CAT
[ENA]
¢þ
>WENV182853514
OKML01000598
[OKML] human gut metagenome; human gut
183
269
+
Leu
TAA
[ENA]
¢þ
>WENV182853532
OKML01001481
[OKML] human gut metagenome; human gut
224
299
+
Lys
TTT
[ENA]
¢þ
>WENV182853512
OKML01000532
[OKML] human gut metagenome; human gut
235
310
+
Trp
CCA
[ENA]
¢þ
>WENV182853518
OKML01000738
[OKML] human gut metagenome; human gut
279
204
-
Lys
TTT
[ENA]
¢þ
>WENV182853524
OKML01000950
[OKML] human gut metagenome; human gut
297
221
-
Val
GAC
[ENA]
¢þ
>WENV182853530
OKML01001371
[OKML] human gut metagenome; human gut
353
277
-
Arg
ACG
[ENA]
¢þ
>WENV182853523
OKML01000950
[OKML] human gut metagenome; human gut
378
302
-
Val
GAC
[ENA]
¢þ
>WENV182853533
OKML01001481
[OKML] human gut metagenome; human gut
433
508
+
Lys
TTT
[ENA]
¢þ
>WENV182853522
OKML01000950
[OKML] human gut metagenome; human gut
459
383
-
Val
GAC
[ENA]
¢þ
>WENV182853527
OKML01001176
[OKML] human gut metagenome; human gut
472
561
+
Ser
CGA
[ENA]
¢þ
>WENV182853496
OKML01000143
[OKML] human gut metagenome; human gut
479
555
+
Met
CAT
[ENA]
¢þ
>WENV182853529
OKML01001371
[OKML] human gut metagenome; human gut
491
415
-
Arg
ACG
[ENA]
¢þ
>WENV182853497
OKML01000143
[OKML] human gut metagenome; human gut
564
648
+
Leu
TAG
[ENA]
¢þ
>WENV182853498
OKML01000143
[OKML] human gut metagenome; human gut
672
746
+
Gln
TTG
[ENA]
¢þ
>WENV182853528
OKML01001371
[OKML] human gut metagenome; human gut
718
642
-
Arg
ACG
[ENA]
¢þ
>WENV182853520
OKML01000748
[OKML] human gut metagenome; human gut
745
658
-
Ser
TGA
[ENA]
¢þ
>WENV182853499
OKML01000143
[OKML] human gut metagenome; human gut
783
857
+
Gln
TTG
[ENA]
¢þ
>WENV182853500
OKML01000143
[OKML] human gut metagenome; human gut
881
957
+
Met
CAT
[ENA]
¢þ
>WENV182853501
OKML01000143
[OKML] human gut metagenome; human gut
1005
1079
+
Gln
CTG
[ENA]
¢þ
>WENV182853502
OKML01000143
[OKML] human gut metagenome; human gut
1155
1229
+
Gln
CTG
[ENA]
¢þ
>WENV182853483
OKML01000004
[OKML] human gut metagenome; human gut
1479
1555
+
Asp
GTC
[ENA]
¢þ
>WENV182853525
OKML01000965
[OKML] human gut metagenome; human gut
1501
1577
+
Arg
CCG
[ENA]
¢þ
>WENV182853490
OKML01000041
[OKML] human gut metagenome; human gut
1524
1618
+
SeC
TCA
[ENA]
¢þ
>WENV182853526
OKML01000965
[OKML] human gut metagenome; human gut
1633
1708
+
His
GTG
[ENA]
¢þ
>WENV182853517
OKML01000720
[OKML] human gut metagenome; human gut
1805
1880
+
Asn
GTT
[ENA]
¢þ
>WENV182853521
OKML01000877
[OKML] human gut metagenome; human gut
1839
1915
+
Pro
CGG
[ENA]
¢þ
>WENV182853485
OKML01000029
[OKML] human gut metagenome; human gut
2141
2065
-
fMet
CAT
[ENA]
¢þ
>WENV182853493
OKML01000084
[OKML] human gut metagenome; human gut
2241
2314
+
Gly
CCC
[ENA]
¢þ
>WENV182853505
OKML01000263
[OKML] human gut metagenome; human gut
2415
2491
+
fMet
CAT
[ENA]
¢þ
>WENV182853516
OKML01000630
[OKML] human gut metagenome; human gut
2754
2829
+
Ala
GGC
[ENA]
¢þ
>WENV182853504
OKML01000198
[OKML] human gut metagenome; human gut
3477
3551
+
Arg
CCT
[ENA]
¢þ
>WENV182853510
OKML01000474
[OKML] human gut metagenome; human gut
3599
3674
+
Thr
TGT
[ENA]
¢þ
>WENV182853509
OKML01000435
[OKML] human gut metagenome; human gut
3916
3840
-
Pro
TGG
[ENA]
¢þ
>WENV182853507
OKML01000307
[OKML] human gut metagenome; human gut
4593
4669
+
Pro
GGG
[ENA]
¢þ
>WENV182853484
OKML01000029
[OKML] human gut metagenome; human gut
6158
6072
-
Leu
GAG
[ENA]
¢þ
>WENV182853503
OKML01000191
[OKML] human gut metagenome; human gut
6388
6302
-
Leu
CAG
[ENA]
¢þ
>WENV182853495
OKML01000122
[OKML] human gut metagenome; human gut
6604
6680
+
Arg
TCT
[ENA]
¢þ
>WENV182853494
OKML01000114
[OKML] human gut metagenome; human gut
6980
7064
+
Leu
CAA
[ENA]
¢þ
>WENV182853491
OKML01000057
[OKML] human gut metagenome; human gut
9203
9128
-
Phe
GAA
[ENA]
¢þ
>WENV182853492
OKML01000070
[OKML] human gut metagenome; human gut
9285
9360
+
Thr
TGT
[ENA]
¢þ
>WENV182853489
OKML01000031
[OKML] human gut metagenome; human gut
9720
9645
-
Thr
GGT
[ENA]
¢þ
>WENV182853488
OKML01000031
[OKML] human gut metagenome; human gut
9800
9726
-
Gly
TCC
[ENA]
¢þ
>WENV182853487
OKML01000031
[OKML] human gut metagenome; human gut
10000
9916
-
Tyr
GTA
[ENA]
¢þ
>WENV182853486
OKML01000031
[OKML] human gut metagenome; human gut
10300
10216
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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