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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKMU] human gut metagenome; human gut
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182854512
OKMU01002531
[OKMU] human gut metagenome; human gut
83
159
+
Ile
GAT
[ENA]
¢þ
>WENV182854514
OKMU01003416
[OKMU] human gut metagenome; human gut
88
160
+
Arg
CCT
[ENA]
¢þ
>WENV182854504
OKMU01000945
[OKMU] human gut metagenome; human gut
95
181
+
Leu
GAG
[ENA]
¢þ
>WENV182854507
OKMU01001414
[OKMU] human gut metagenome; human gut
121
193
+
Thr
CGT
[ENA]
¢þ
>WENV182854493
OKMU01000220
[OKMU] human gut metagenome; human gut
149
74
-
His
GTG
[ENA]
¢þ
>WENV182854506
OKMU01001129
[OKMU] human gut metagenome; human gut
174
268
+
SeC
TCA
[ENA]
¢þ
>WENV182854513
OKMU01002531
[OKMU] human gut metagenome; human gut
267
342
+
Ala
TGC
[ENA]
¢þ
>WENV182854492
OKMU01000220
[OKMU] human gut metagenome; human gut
281
205
-
Arg
CCG
[ENA]
¢þ
>WENV182854510
OKMU01001774
[OKMU] human gut metagenome; human gut
628
553
-
Ile2
CAT
[ENA]
¢þ
>WENV182854508
OKMU01001573
[OKMU] human gut metagenome; human gut
645
720
+
Asn
GTT
[ENA]
¢þ
>WENV182854491
OKMU01000210
[OKMU] human gut metagenome; human gut
665
749
+
Leu
CAA
[ENA]
¢þ
>WENV182854509
OKMU01001694
[OKMU] human gut metagenome; human gut
704
780
+
fMet
CAT
[ENA]
¢þ
>WENV182854505
OKMU01001077
[OKMU] human gut metagenome; human gut
711
784
+
Gly
CCC
[ENA]
¢þ
>WENV182854494
OKMU01000318
[OKMU] human gut metagenome; human gut
746
821
+
Phe
GAA
[ENA]
¢þ
>WENV182854498
OKMU01000385
[OKMU] human gut metagenome; human gut
831
756
-
Trp
CCA
[ENA]
¢þ
>WENV182854511
OKMU01001910
[OKMU] human gut metagenome; human gut
853
767
-
Leu
CAG
[ENA]
¢þ
>WENV182854497
OKMU01000385
[OKMU] human gut metagenome; human gut
961
885
-
Asp
GTC
[ENA]
¢þ
>WENV182854503
OKMU01000679
[OKMU] human gut metagenome; human gut
1458
1372
-
Leu
TAA
[ENA]
¢þ
>WENV182854489
OKMU01000091
[OKMU] human gut metagenome; human gut
1460
1535
+
Gly
GCC
[ENA]
¢þ
>WENV182854499
OKMU01000546
[OKMU] human gut metagenome; human gut
1529
1605
+
Met
CAT
[ENA]
¢þ
>WENV182854502
OKMU01000679
[OKMU] human gut metagenome; human gut
1545
1472
-
Cys
GCA
[ENA]
¢þ
>WENV182854500
OKMU01000546
[OKMU] human gut metagenome; human gut
1614
1698
+
Leu
TAG
[ENA]
¢þ
>WENV182854501
OKMU01000546
[OKMU] human gut metagenome; human gut
1722
1796
+
Gln
TTG
[ENA]
¢þ
>WENV182854495
OKMU01000374
[OKMU] human gut metagenome; human gut
1779
1854
+
Lys
TTT
[ENA]
¢þ
>WENV182854496
OKMU01000374
[OKMU] human gut metagenome; human gut
1980
2055
+
Val
TAC
[ENA]
¢þ
>WENV182854490
OKMU01000180
[OKMU] human gut metagenome; human gut
2144
2068
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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