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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKMZ] human gut metagenome; human gut
HIT:
47 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182855371
OKMZ01001399
[OKMZ] human gut metagenome; human gut
1
72
+
Glu
TTC
[ENA]
¢þ
>WENV182855373
OKMZ01001422
[OKMZ] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182855364
OKMZ01001030
[OKMZ] human gut metagenome; human gut
59
142
+
Tyr
GTA
[ENA]
¢þ
>WENV182855346
OKMZ01000313
[OKMZ] human gut metagenome; human gut
62
136
+
Asn
GTT
[ENA]
¢þ
>WENV182855339
OKMZ01000067
[OKMZ] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV182855372
OKMZ01001399
[OKMZ] human gut metagenome; human gut
124
214
+
Ser
GGA
[ENA]
¢þ
>WENV182855347
OKMZ01000313
[OKMZ] human gut metagenome; human gut
139
229
+
Ser
GCT
[ENA]
¢þ
>WENV182855374
OKMZ01001422
[OKMZ] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182855365
OKMZ01001030
[OKMZ] human gut metagenome; human gut
151
224
+
Trp
CCA
[ENA]
¢þ
>WENV182855340
OKMZ01000067
[OKMZ] human gut metagenome; human gut
167
240
+
Glu
TTC
[ENA]
¢þ
>WENV182855366
OKMZ01001030
[OKMZ] human gut metagenome; human gut
227
300
+
His
GTG
[ENA]
¢þ
>WENV182855375
OKMZ01001422
[OKMZ] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182855367
OKMZ01001030
[OKMZ] human gut metagenome; human gut
311
382
+
Gln
TTG
[ENA]
¢þ
>WENV182855376
OKMZ01001422
[OKMZ] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182855368
OKMZ01001030
[OKMZ] human gut metagenome; human gut
388
461
+
Cys
GCA
[ENA]
¢þ
>WENV182855377
OKMZ01001422
[OKMZ] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182855363
OKMZ01000864
[OKMZ] human gut metagenome; human gut
462
534
+
Ala
TGC
[ENA]
¢þ
>WENV182855361
OKMZ01000763
[OKMZ] human gut metagenome; human gut
476
552
+
Ile
GAT
[ENA]
¢þ
>WENV182855378
OKMZ01001422
[OKMZ] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182855360
OKMZ01000555
[OKMZ] human gut metagenome; human gut
510
437
-
Glu
TTC
[ENA]
¢þ
>WENV182855362
OKMZ01000763
[OKMZ] human gut metagenome; human gut
573
648
+
Ala
TGC
[ENA]
¢þ
>WENV182855370
OKMZ01001141
[OKMZ] human gut metagenome; human gut
577
652
+
Val
TAC
[ENA]
¢þ
>WENV182855369
OKMZ01001030
[OKMZ] human gut metagenome; human gut
586
669
+
Leu
CAA
[ENA]
¢þ
>WENV182855359
OKMZ01000487
[OKMZ] human gut metagenome; human gut
738
809
+
Arg
CCG
[ENA]
¢þ
>WENV182855358
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1089
1004
-
Leu
CAA
[ENA]
¢þ
>WENV182855357
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1172
1102
-
Cys
GCA
[ENA]
¢þ
>WENV182855356
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1270
1197
-
Gln
TTG
[ENA]
¢þ
>WENV182855355
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1356
1283
-
His
GTG
[ENA]
¢þ
>WENV182855337
OKMZ01000040
[OKMZ] human gut metagenome; human gut
1441
1369
-
Thr
GGT
[ENA]
¢þ
>WENV182855354
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1466
1393
-
Trp
CCA
[ENA]
¢þ
>WENV182855353
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1552
1470
-
Tyr
GTA
[ENA]
¢þ
>WENV182855352
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1629
1557
-
Phe
GAA
[ENA]
¢þ
>WENV182855351
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1750
1675
-
Asp
GTC
[ENA]
¢þ
>WENV182855350
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1834
1760
-
Val
TAC
[ENA]
¢þ
>WENV182855349
OKMZ01000351
[OKMZ] human gut metagenome; human gut
1933
1860
-
Glu
TTC
[ENA]
¢þ
>WENV182855348
OKMZ01000351
[OKMZ] human gut metagenome; human gut
2039
1949
-
Ser
GGA
[ENA]
¢þ
>WENV182855333
OKMZ01000003
[OKMZ] human gut metagenome; human gut
2889
2814
-
Arg
TCT
[ENA]
¢þ
>WENV182855345
OKMZ01000099
[OKMZ] human gut metagenome; human gut
6512
6439
-
Gln
TTG
[ENA]
¢þ
>WENV182855344
OKMZ01000099
[OKMZ] human gut metagenome; human gut
6602
6520
-
Tyr
GTA
[ENA]
¢þ
>WENV182855343
OKMZ01000091
[OKMZ] human gut metagenome; human gut
9721
9810
+
Ser
CGA
[ENA]
¢þ
>WENV182855335
OKMZ01000028
[OKMZ] human gut metagenome; human gut
10492
10420
-
Thr
CGT
[ENA]
¢þ
>WENV182855342
OKMZ01000087
[OKMZ] human gut metagenome; human gut
12216
12143
-
Pro
TGG
[ENA]
¢þ
>WENV182855341
OKMZ01000076
[OKMZ] human gut metagenome; human gut
13597
13668
+
Trp
CCA
[ENA]
¢þ
>WENV182855338
OKMZ01000050
[OKMZ] human gut metagenome; human gut
18013
18099
+
Leu
GAG
[ENA]
¢þ
>WENV182855336
OKMZ01000039
[OKMZ] human gut metagenome; human gut
21951
21876
-
Asn
GTT
[ENA]
¢þ
>WENV182855334
OKMZ01000017
[OKMZ] human gut metagenome; human gut
33005
33078
+
Arg
CCG
[ENA]
¢þ
>WENV182855332
OKMZ01000003
[OKMZ] human gut metagenome; human gut
52222
52297
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK