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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKND] human gut metagenome; human gut
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182855667
OKND01000320
[OKND] human gut metagenome; human gut
106
30
-
fMet
CAT
[ENA]
¢þ
>WENV182855663
OKND01000260
[OKND] human gut metagenome; human gut
139
215
+
Met
CAT
[ENA]
¢þ
>WENV182855656
OKND01000008
[OKND] human gut metagenome; human gut
146
70
-
Asp
GTC
[ENA]
¢þ
>WENV182855662
OKND01000175
[OKND] human gut metagenome; human gut
224
149
-
Gly
GCC
[ENA]
¢þ
>WENV182855664
OKND01000260
[OKND] human gut metagenome; human gut
225
309
+
Leu
TAG
[ENA]
¢þ
>WENV182855659
OKND01000157
[OKND] human gut metagenome; human gut
309
384
+
Val
TAC
[ENA]
¢þ
>WENV182855665
OKND01000260
[OKND] human gut metagenome; human gut
333
407
+
Gln
TTG
[ENA]
¢þ
>WENV182855660
OKND01000157
[OKND] human gut metagenome; human gut
388
463
+
Lys
TTT
[ENA]
¢þ
>WENV182855666
OKND01000260
[OKND] human gut metagenome; human gut
444
518
+
Gln
CTG
[ENA]
¢þ
>WENV182855661
OKND01000174
[OKND] human gut metagenome; human gut
465
389
-
Pro
CGG
[ENA]
¢þ
>WENV182855658
OKND01000152
[OKND] human gut metagenome; human gut
470
545
+
Asn
GTT
[ENA]
¢þ
>WENV182855657
OKND01000060
[OKND] human gut metagenome; human gut
609
523
-
Leu
CAG
[ENA]
¢þ
>WENV182855655
OKND01000008
[OKND] human gut metagenome; human gut
3569
3494
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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