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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKNR] human gut metagenome; human gut
HIT:
102 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182856945
OKNR01000403
[OKNR] human gut metagenome; human gut
61
136
+
Arg
CCT
[ENA]
¢þ
>WENV182856943
OKNR01000169
[OKNR] human gut metagenome; human gut
76
2
-
Ala
TGC
[ENA]
¢þ
>WENV182856916
OKNR01000047
[OKNR] human gut metagenome; human gut
82
7
-
Phe
GAA
[ENA]
¢þ
>WENV182856889
OKNR01000011
[OKNR] human gut metagenome; human gut
91
165
+
Gln
TTG
[ENA]
¢þ
>WENV182856890
OKNR01000011
[OKNR] human gut metagenome; human gut
189
265
+
Met
CAT
[ENA]
¢þ
>WENV182856888
OKNR01000008
[OKNR] human gut metagenome; human gut
281
205
-
Pro
CGG
[ENA]
¢þ
>WENV182856891
OKNR01000011
[OKNR] human gut metagenome; human gut
313
387
+
Gln
CTG
[ENA]
¢þ
>WENV182856946
OKNR01000444
[OKNR] human gut metagenome; human gut
390
464
+
Val
TAC
[ENA]
¢þ
>WENV182856892
OKNR01000011
[OKNR] human gut metagenome; human gut
463
537
+
Gln
CTG
[ENA]
¢þ
>WENV182856947
OKNR01000444
[OKNR] human gut metagenome; human gut
469
543
+
Lys
TTT
[ENA]
¢þ
>WENV182856917
OKNR01000052
[OKNR] human gut metagenome; human gut
528
601
+
Asn
GTT
[ENA]
¢þ
>WENV182856953
OKNR01000834
[OKNR] human gut metagenome; human gut
548
623
+
Glu
TTC
[ENA]
¢þ
>WENV182856948
OKNR01000444
[OKNR] human gut metagenome; human gut
558
641
+
Leu
TAG
[ENA]
¢þ
>WENV182856944
OKNR01000290
[OKNR] human gut metagenome; human gut
643
718
+
Arg
TCT
[ENA]
¢þ
>WENV182856949
OKNR01000444
[OKNR] human gut metagenome; human gut
647
722
+
Thr
TGT
[ENA]
¢þ
>WENV182856950
OKNR01000444
[OKNR] human gut metagenome; human gut
727
798
+
Gly
GCC
[ENA]
¢þ
>WENV182856951
OKNR01000444
[OKNR] human gut metagenome; human gut
814
899
+
Leu
TAA
[ENA]
¢þ
>WENV182856952
OKNR01000444
[OKNR] human gut metagenome; human gut
914
987
+
Arg
ACG
[ENA]
¢þ
>WENV182856938
OKNR01000076
[OKNR] human gut metagenome; human gut
1759
1834
+
Thr
CGT
[ENA]
¢þ
>WENV182856942
OKNR01000165
[OKNR] human gut metagenome; human gut
1868
1954
+
Leu
GAG
[ENA]
¢þ
>WENV182856939
OKNR01000115
[OKNR] human gut metagenome; human gut
3628
3703
+
Thr
TGT
[ENA]
¢þ
>WENV182856940
OKNR01000115
[OKNR] human gut metagenome; human gut
3714
3798
+
Tyr
GTA
[ENA]
¢þ
>WENV182856941
OKNR01000115
[OKNR] human gut metagenome; human gut
3914
3988
+
Gly
TCC
[ENA]
¢þ
>WENV182856907
OKNR01000028
[OKNR] human gut metagenome; human gut
9426
9502
+
Asp
GTC
[ENA]
¢þ
>WENV182856906
OKNR01000027
[OKNR] human gut metagenome; human gut
13641
13552
-
Ser
GGA
[ENA]
¢þ
>WENV182856912
OKNR01000038
[OKNR] human gut metagenome; human gut
14896
14970
+
Thr
GGT
[ENA]
¢þ
>WENV182856918
OKNR01000058
[OKNR] human gut metagenome; human gut
16529
16611
+
Leu
CAG
[ENA]
¢þ
>WENV182856919
OKNR01000058
[OKNR] human gut metagenome; human gut
16737
16825
+
Ser
CGA
[ENA]
¢þ
>WENV182856937
OKNR01000067
[OKNR] human gut metagenome; human gut
19862
19773
-
Ser
GCT
[ENA]
¢þ
>WENV182856936
OKNR01000067
[OKNR] human gut metagenome; human gut
19947
19872
-
Ile
GAT
[ENA]
¢þ
>WENV182856935
OKNR01000067
[OKNR] human gut metagenome; human gut
20057
19985
-
Gly
TCC
[ENA]
¢þ
>WENV182856934
OKNR01000067
[OKNR] human gut metagenome; human gut
20145
20073
-
Phe
GAA
[ENA]
¢þ
>WENV182856933
OKNR01000067
[OKNR] human gut metagenome; human gut
20225
20152
-
fMet
CAT
[ENA]
¢þ
>WENV182856932
OKNR01000067
[OKNR] human gut metagenome; human gut
20327
20238
-
Ser
TGA
[ENA]
¢þ
>WENV182856931
OKNR01000067
[OKNR] human gut metagenome; human gut
20415
20340
-
Ile2
CAT
[ENA]
¢þ
>WENV182856930
OKNR01000067
[OKNR] human gut metagenome; human gut
20503
20428
-
Met
CAT
[ENA]
¢þ
>WENV182856929
OKNR01000067
[OKNR] human gut metagenome; human gut
20582
20509
-
Pro
TGG
[ENA]
¢þ
>WENV182856928
OKNR01000067
[OKNR] human gut metagenome; human gut
20696
20623
-
Arg
ACG
[ENA]
¢þ
>WENV182856927
OKNR01000067
[OKNR] human gut metagenome; human gut
20791
20706
-
Leu
TAA
[ENA]
¢þ
>WENV182856926
OKNR01000067
[OKNR] human gut metagenome; human gut
20870
20799
-
Gly
GCC
[ENA]
¢þ
>WENV182856925
OKNR01000067
[OKNR] human gut metagenome; human gut
20962
20890
-
Thr
TGT
[ENA]
¢þ
>WENV182856924
OKNR01000067
[OKNR] human gut metagenome; human gut
21054
20973
-
Leu
TAG
[ENA]
¢þ
>WENV182856893
OKNR01000012
[OKNR] human gut metagenome; human gut
21071
21158
+
Ser
TGA
[ENA]
¢þ
>WENV182856923
OKNR01000067
[OKNR] human gut metagenome; human gut
21136
21064
-
Lys
TTT
[ENA]
¢þ
>WENV182856922
OKNR01000067
[OKNR] human gut metagenome; human gut
21236
21164
-
Asp
GTC
[ENA]
¢þ
>WENV182856921
OKNR01000067
[OKNR] human gut metagenome; human gut
21335
21261
-
Val
TAC
[ENA]
¢þ
>WENV182856920
OKNR01000062
[OKNR] human gut metagenome; human gut
24330
24405
+
Lys
CTT
[ENA]
¢þ
>WENV182856915
OKNR01000043
[OKNR] human gut metagenome; human gut
32382
32298
-
Leu
CAA
[ENA]
¢þ
>WENV182856914
OKNR01000038
[OKNR] human gut metagenome; human gut
36212
36127
-
Leu
AAG
[ENA]
¢þ
>WENV182856913
OKNR01000038
[OKNR] human gut metagenome; human gut
37480
37395
-
Leu
AAG
[ENA]
¢þ
>WENV182856886
OKNR01000007
[OKNR] human gut metagenome; human gut
39632
39561
-
Arg
CCG
[ENA]
¢þ
>WENV182856885
OKNR01000007
[OKNR] human gut metagenome; human gut
41148
41075
-
Gln
TTG
[ENA]
¢þ
>WENV182856884
OKNR01000007
[OKNR] human gut metagenome; human gut
41234
41160
-
His
GTG
[ENA]
¢þ
>WENV182856883
OKNR01000007
[OKNR] human gut metagenome; human gut
41319
41247
-
Trp
CCA
[ENA]
¢þ
>WENV182856882
OKNR01000007
[OKNR] human gut metagenome; human gut
41406
41326
-
Tyr
GTA
[ENA]
¢þ
>WENV182856903
OKNR01000022
[OKNR] human gut metagenome; human gut
47909
47833
-
Pro
TGG
[ENA]
¢þ
>WENV182856902
OKNR01000022
[OKNR] human gut metagenome; human gut
48038
47952
-
Leu
CAG
[ENA]
¢þ
>WENV182856901
OKNR01000022
[OKNR] human gut metagenome; human gut
48137
48062
-
His
GTG
[ENA]
¢þ
>WENV182856900
OKNR01000022
[OKNR] human gut metagenome; human gut
48269
48193
-
Arg
CCG
[ENA]
¢þ
>WENV182856909
OKNR01000034
[OKNR] human gut metagenome; human gut
58657
58733
+
Met
CAT
[ENA]
¢þ
>WENV182856910
OKNR01000034
[OKNR] human gut metagenome; human gut
58742
58826
+
Leu
TAG
[ENA]
¢þ
>WENV182856911
OKNR01000034
[OKNR] human gut metagenome; human gut
58850
58924
+
Gln
TTG
[ENA]
¢þ
>WENV182856862
OKNR01000001
[OKNR] human gut metagenome; human gut
60402
60327
-
Ile2
CAT
[ENA]
¢þ
>WENV182856895
OKNR01000012
[OKNR] human gut metagenome; human gut
65184
65097
-
Ser
GGA
[ENA]
¢þ
>WENV182856908
OKNR01000028
[OKNR] human gut metagenome; human gut
70387
70312
-
Thr
CGT
[ENA]
¢þ
>WENV182856894
OKNR01000012
[OKNR] human gut metagenome; human gut
70425
70338
-
Ser
GGA
[ENA]
¢þ
>WENV182856904
OKNR01000025
[OKNR] human gut metagenome; human gut
82688
82774
+
Leu
CAG
[ENA]
¢þ
>WENV182856905
OKNR01000025
[OKNR] human gut metagenome; human gut
82806
82892
+
Leu
CAG
[ENA]
¢þ
>WENV182856897
OKNR01000015
[OKNR] human gut metagenome; human gut
84396
84482
+
Leu
GAG
[ENA]
¢þ
>WENV182856881
OKNR01000007
[OKNR] human gut metagenome; human gut
86374
86303
-
Arg
CCT
[ENA]
¢þ
>WENV182856899
OKNR01000022
[OKNR] human gut metagenome; human gut
86376
86301
-
Trp
CCA
[ENA]
¢þ
>WENV182856898
OKNR01000015
[OKNR] human gut metagenome; human gut
88412
88488
+
fMet
CAT
[ENA]
¢þ
>WENV182856865
OKNR01000003
[OKNR] human gut metagenome; human gut
108574
108658
+
Tyr
GTA
[ENA]
¢þ
>WENV182856866
OKNR01000003
[OKNR] human gut metagenome; human gut
108875
108959
+
Tyr
GTA
[ENA]
¢þ
>WENV182856896
OKNR01000013
[OKNR] human gut metagenome; human gut
112934
113010
+
Arg
TCT
[ENA]
¢þ
>WENV182856887
OKNR01000008
[OKNR] human gut metagenome; human gut
130981
131075
+
SeC
TCA
[ENA]
¢þ
>WENV182856875
OKNR01000005
[OKNR] human gut metagenome; human gut
147064
147140
+
Pro
GGG
[ENA]
¢þ
>WENV182856861
OKNR01000001
[OKNR] human gut metagenome; human gut
187599
187524
-
Phe
GAA
[ENA]
¢þ
>WENV182856876
OKNR01000005
[OKNR] human gut metagenome; human gut
263925
263999
+
Arg
CCT
[ENA]
¢þ
>WENV182856852
OKNR01000001
[OKNR] human gut metagenome; human gut
275480
275553
+
Gly
CCC
[ENA]
¢þ
>WENV182856880
OKNR01000005
[OKNR] human gut metagenome; human gut
284394
284319
-
Ala
GGC
[ENA]
¢þ
>WENV182856879
OKNR01000005
[OKNR] human gut metagenome; human gut
284511
284436
-
Ala
GGC
[ENA]
¢þ
>WENV182856877
OKNR01000005
[OKNR] human gut metagenome; human gut
287210
287285
+
Val
TAC
[ENA]
¢þ
>WENV182856878
OKNR01000005
[OKNR] human gut metagenome; human gut
287332
287407
+
Val
TAC
[ENA]
¢þ
>WENV182856874
OKNR01000003
[OKNR] human gut metagenome; human gut
357583
357497
-
Leu
TAA
[ENA]
¢þ
>WENV182856873
OKNR01000003
[OKNR] human gut metagenome; human gut
357670
357597
-
Cys
GCA
[ENA]
¢þ
>WENV182856872
OKNR01000003
[OKNR] human gut metagenome; human gut
357786
357711
-
Gly
GCC
[ENA]
¢þ
>WENV182856871
OKNR01000003
[OKNR] human gut metagenome; human gut
378981
378892
-
Ser
CGA
[ENA]
¢þ
>WENV182856867
OKNR01000003
[OKNR] human gut metagenome; human gut
379973
380048
+
Asn
GTT
[ENA]
¢þ
>WENV182856868
OKNR01000003
[OKNR] human gut metagenome; human gut
384857
384932
+
Asn
GTT
[ENA]
¢þ
>WENV182856870
OKNR01000003
[OKNR] human gut metagenome; human gut
393850
393775
-
Asn
GTT
[ENA]
¢þ
>WENV182856869
OKNR01000003
[OKNR] human gut metagenome; human gut
395608
395683
+
Asn
GTT
[ENA]
¢þ
>WENV182856860
OKNR01000001
[OKNR] human gut metagenome; human gut
401455
401379
-
fMet
CAT
[ENA]
¢þ
>WENV182856859
OKNR01000001
[OKNR] human gut metagenome; human gut
401564
401488
-
fMet
CAT
[ENA]
¢þ
>WENV182856858
OKNR01000001
[OKNR] human gut metagenome; human gut
401673
401597
-
fMet
CAT
[ENA]
¢þ
>WENV182856863
OKNR01000002
[OKNR] human gut metagenome; human gut
429007
429083
+
Val
GAC
[ENA]
¢þ
>WENV182856864
OKNR01000002
[OKNR] human gut metagenome; human gut
429088
429164
+
Val
GAC
[ENA]
¢þ
>WENV182856853
OKNR01000001
[OKNR] human gut metagenome; human gut
553621
553713
+
Ser
GCT
[ENA]
¢þ
>WENV182856854
OKNR01000001
[OKNR] human gut metagenome; human gut
553718
553794
+
Arg
ACG
[ENA]
¢þ
>WENV182856855
OKNR01000001
[OKNR] human gut metagenome; human gut
553856
553932
+
Arg
ACG
[ENA]
¢þ
>WENV182856856
OKNR01000001
[OKNR] human gut metagenome; human gut
554083
554159
+
Arg
ACG
[ENA]
¢þ
>WENV182856857
OKNR01000001
[OKNR] human gut metagenome; human gut
554388
554464
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK