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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKOA] human gut metagenome; human gut
HIT:
55 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182857836
OKOA01000542
[OKOA] human gut metagenome; human gut
27
100
+
Glu
TTC
[ENA]
¢þ
>WENV182857864
OKOA01001930
[OKOA] human gut metagenome; human gut
64
139
+
Asp
GTC
[ENA]
¢þ
>WENV182857853
OKOA01001622
[OKOA] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV182857875
OKOA01002874
[OKOA] human gut metagenome; human gut
88
13
-
Thr
CGT
[ENA]
¢þ
>WENV182857833
OKOA01000362
[OKOA] human gut metagenome; human gut
91
165
+
Gln
TTG
[ENA]
¢þ
>WENV182857861
OKOA01001679
[OKOA] human gut metagenome; human gut
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV182857837
OKOA01000542
[OKOA] human gut metagenome; human gut
126
200
+
Val
TAC
[ENA]
¢þ
>WENV182857854
OKOA01001622
[OKOA] human gut metagenome; human gut
170
245
+
Ile2
CAT
[ENA]
¢þ
>WENV182857865
OKOA01001930
[OKOA] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV182857834
OKOA01000362
[OKOA] human gut metagenome; human gut
189
265
+
Met
CAT
[ENA]
¢þ
>WENV182857838
OKOA01000542
[OKOA] human gut metagenome; human gut
205
279
+
Lys
TTT
[ENA]
¢þ
>WENV182857827
OKOA01000084
[OKOA] human gut metagenome; human gut
224
299
+
Asn
GTT
[ENA]
¢þ
>WENV182857866
OKOA01001930
[OKOA] human gut metagenome; human gut
262
344
+
Tyr
GTA
[ENA]
¢þ
>WENV182857855
OKOA01001622
[OKOA] human gut metagenome; human gut
278
367
+
Ser
TGA
[ENA]
¢þ
>WENV182857832
OKOA01000295
[OKOA] human gut metagenome; human gut
281
205
-
Pro
CGG
[ENA]
¢þ
>WENV182857839
OKOA01000542
[OKOA] human gut metagenome; human gut
294
377
+
Leu
TAG
[ENA]
¢þ
>WENV182857863
OKOA01001753
[OKOA] human gut metagenome; human gut
296
212
-
Tyr
GTA
[ENA]
¢þ
>WENV182857877
OKOA01003951
[OKOA] human gut metagenome; human gut
305
229
-
Arg
TCT
[ENA]
¢þ
>WENV182857835
OKOA01000362
[OKOA] human gut metagenome; human gut
313
387
+
Gln
CTG
[ENA]
¢þ
>WENV182857874
OKOA01002705
[OKOA] human gut metagenome; human gut
322
408
+
Leu
GAG
[ENA]
¢þ
>WENV182857867
OKOA01001930
[OKOA] human gut metagenome; human gut
348
421
+
Trp
CCA
[ENA]
¢þ
>WENV182857862
OKOA01001753
[OKOA] human gut metagenome; human gut
382
307
-
Thr
TGT
[ENA]
¢þ
>WENV182857840
OKOA01000542
[OKOA] human gut metagenome; human gut
383
458
+
Thr
TGT
[ENA]
¢þ
>WENV182857856
OKOA01001622
[OKOA] human gut metagenome; human gut
400
475
+
fMet
CAT
[ENA]
¢þ
>WENV182857876
OKOA01002925
[OKOA] human gut metagenome; human gut
455
379
-
Pro
GGG
[ENA]
¢þ
>WENV182857868
OKOA01001930
[OKOA] human gut metagenome; human gut
458
531
+
His
GTG
[ENA]
¢þ
>WENV182857841
OKOA01000542
[OKOA] human gut metagenome; human gut
463
534
+
Gly
GCC
[ENA]
¢þ
>WENV182857857
OKOA01001622
[OKOA] human gut metagenome; human gut
522
597
+
Asp
GTC
[ENA]
¢þ
>WENV182857872
OKOA01002001
[OKOA] human gut metagenome; human gut
531
605
+
Arg
CCT
[ENA]
¢þ
>WENV182857869
OKOA01001930
[OKOA] human gut metagenome; human gut
544
617
+
Gln
TTG
[ENA]
¢þ
>WENV182857842
OKOA01000542
[OKOA] human gut metagenome; human gut
550
635
+
Leu
TAA
[ENA]
¢þ
>WENV182857852
OKOA01001378
[OKOA] human gut metagenome; human gut
580
504
-
fMet
CAT
[ENA]
¢þ
>WENV182857858
OKOA01001622
[OKOA] human gut metagenome; human gut
601
678
+
Phe
GAA
[ENA]
¢þ
>WENV182857870
OKOA01001930
[OKOA] human gut metagenome; human gut
642
712
+
Cys
GCA
[ENA]
¢þ
>WENV182857843
OKOA01000542
[OKOA] human gut metagenome; human gut
650
723
+
Arg
ACG
[ENA]
¢þ
>WENV182857871
OKOA01001945
[OKOA] human gut metagenome; human gut
660
585
-
Gly
GCC
[ENA]
¢þ
>WENV182857846
OKOA01000775
[OKOA] human gut metagenome; human gut
667
743
+
Asp
GTC
[ENA]
¢þ
>WENV182857873
OKOA01002561
[OKOA] human gut metagenome; human gut
685
596
-
Ser
CGA
[ENA]
¢þ
>WENV182857859
OKOA01001622
[OKOA] human gut metagenome; human gut
689
759
+
Gly
TCC
[ENA]
¢þ
>WENV182857849
OKOA01001295
[OKOA] human gut metagenome; human gut
702
794
+
Ser
GCT
[ENA]
¢þ
>WENV182857844
OKOA01000542
[OKOA] human gut metagenome; human gut
735
808
+
Pro
TGG
[ENA]
¢þ
>WENV182857860
OKOA01001622
[OKOA] human gut metagenome; human gut
768
843
+
Ile
GAT
[ENA]
¢þ
>WENV182857851
OKOA01001296
[OKOA] human gut metagenome; human gut
773
848
+
Phe
GAA
[ENA]
¢þ
>WENV182857850
OKOA01001295
[OKOA] human gut metagenome; human gut
799
875
+
Arg
ACG
[ENA]
¢þ
>WENV182857823
OKOA01000019
[OKOA] human gut metagenome; human gut
857
929
+
Ala
TGC
[ENA]
¢þ
>WENV182857847
OKOA01000909
[OKOA] human gut metagenome; human gut
862
937
+
Glu
TTC
[ENA]
¢þ
>WENV182857848
OKOA01001115
[OKOA] human gut metagenome; human gut
869
794
-
Lys
TTT
[ENA]
¢þ
>WENV182857829
OKOA01000205
[OKOA] human gut metagenome; human gut
912
988
+
Arg
CCG
[ENA]
¢þ
>WENV182857830
OKOA01000205
[OKOA] human gut metagenome; human gut
1044
1119
+
His
GTG
[ENA]
¢þ
>WENV182857831
OKOA01000205
[OKOA] human gut metagenome; human gut
1143
1229
+
Leu
CAG
[ENA]
¢þ
>WENV182857845
OKOA01000578
[OKOA] human gut metagenome; human gut
1289
1213
-
Pro
TGG
[ENA]
¢þ
>WENV182857826
OKOA01000030
[OKOA] human gut metagenome; human gut
1362
1268
-
SeC
TCA
[ENA]
¢þ
>WENV182857828
OKOA01000106
[OKOA] human gut metagenome; human gut
2170
2084
-
Leu
GAG
[ENA]
¢þ
>WENV182857824
OKOA01000019
[OKOA] human gut metagenome; human gut
4236
4311
+
Asn
GTT
[ENA]
¢þ
>WENV182857825
OKOA01000019
[OKOA] human gut metagenome; human gut
4353
4443
+
Ser
GGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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