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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKOK] human gut metagenome; human gut
HIT:
52 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182859034
OKOK01001046
[OKOK] human gut metagenome; human gut
59
133
+
Lys
TTT
[ENA]
¢þ
>WENV182859021
OKOK01000099
[OKOK] human gut metagenome; human gut
64
153
+
Ser
GCT
[ENA]
¢þ
>WENV182859007
OKOK01000051
[OKOK] human gut metagenome; human gut
96
186
+
Ser
GGA
[ENA]
¢þ
>WENV182859019
OKOK01000067
[OKOK] human gut metagenome; human gut
144
217
+
Pro
TGG
[ENA]
¢þ
>WENV182859040
OKOK01001063
[OKOK] human gut metagenome; human gut
148
224
+
Ile2
CAT
[ENA]
¢þ
>WENV182859035
OKOK01001046
[OKOK] human gut metagenome; human gut
148
231
+
Leu
TAG
[ENA]
¢þ
>WENV182859033
OKOK01000926
[OKOK] human gut metagenome; human gut
152
80
-
Ala
TGC
[ENA]
¢þ
>WENV182859000
OKOK01000007
[OKOK] human gut metagenome; human gut
156
70
-
Leu
GAG
[ENA]
¢þ
>WENV182859031
OKOK01000637
[OKOK] human gut metagenome; human gut
161
86
-
Val
TAC
[ENA]
¢þ
>WENV182859050
OKOK01001331
[OKOK] human gut metagenome; human gut
163
88
-
Ile2
CAT
[ENA]
¢þ
>WENV182859022
OKOK01000099
[OKOK] human gut metagenome; human gut
167
240
+
Glu
TTC
[ENA]
¢þ
>WENV182859028
OKOK01000583
[OKOK] human gut metagenome; human gut
187
261
+
Asp
GTC
[ENA]
¢þ
>WENV182859008
OKOK01000051
[OKOK] human gut metagenome; human gut
202
275
+
Glu
TTC
[ENA]
¢þ
>WENV182859036
OKOK01001046
[OKOK] human gut metagenome; human gut
237
312
+
Thr
TGT
[ENA]
¢þ
>WENV182859046
OKOK01001251
[OKOK] human gut metagenome; human gut
243
169
-
Val
GAC
[ENA]
¢þ
>WENV182859049
OKOK01001331
[OKOK] human gut metagenome; human gut
257
182
-
Met
CAT
[ENA]
¢þ
>WENV182859009
OKOK01000051
[OKOK] human gut metagenome; human gut
301
375
+
Val
TAC
[ENA]
¢þ
>WENV182859045
OKOK01001251
[OKOK] human gut metagenome; human gut
315
244
-
Cys
GCA
[ENA]
¢þ
>WENV182859037
OKOK01001046
[OKOK] human gut metagenome; human gut
317
388
+
Gly
GCC
[ENA]
¢þ
>WENV182859029
OKOK01000583
[OKOK] human gut metagenome; human gut
319
395
+
Phe
GAA
[ENA]
¢þ
>WENV182859048
OKOK01001331
[OKOK] human gut metagenome; human gut
353
279
-
Ala
TGC
[ENA]
¢þ
>WENV182859041
OKOK01001081
[OKOK] human gut metagenome; human gut
363
438
+
Ile
GAT
[ENA]
¢þ
>WENV182859042
OKOK01001108
[OKOK] human gut metagenome; human gut
381
455
+
Lys
CTT
[ENA]
¢þ
>WENV182859010
OKOK01000051
[OKOK] human gut metagenome; human gut
385
460
+
Asp
GTC
[ENA]
¢þ
>WENV182859038
OKOK01001046
[OKOK] human gut metagenome; human gut
404
489
+
Leu
TAA
[ENA]
¢þ
>WENV182859044
OKOK01001251
[OKOK] human gut metagenome; human gut
420
347
-
Gly
GCC
[ENA]
¢þ
>WENV182859025
OKOK01000410
[OKOK] human gut metagenome; human gut
421
345
-
Pro
CGG
[ENA]
¢þ
>WENV182859030
OKOK01000620
[OKOK] human gut metagenome; human gut
428
354
-
Arg
CCG
[ENA]
¢þ
>WENV182859047
OKOK01001331
[OKOK] human gut metagenome; human gut
439
366
-
Pro
TGG
[ENA]
¢þ
>WENV182859027
OKOK01000552
[OKOK] human gut metagenome; human gut
455
371
-
Leu
TAG
[ENA]
¢þ
>WENV182859043
OKOK01001175
[OKOK] human gut metagenome; human gut
455
528
+
Gly
CCC
[ENA]
¢þ
>WENV182859039
OKOK01001046
[OKOK] human gut metagenome; human gut
504
577
+
Arg
ACG
[ENA]
¢þ
>WENV182859011
OKOK01000051
[OKOK] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>WENV182859024
OKOK01000392
[OKOK] human gut metagenome; human gut
559
486
-
Lys
CTT
[ENA]
¢þ
>WENV182859032
OKOK01000892
[OKOK] human gut metagenome; human gut
567
493
-
Val
CAC
[ENA]
¢þ
>WENV182859012
OKOK01000051
[OKOK] human gut metagenome; human gut
583
665
+
Tyr
GTA
[ENA]
¢þ
>WENV182859026
OKOK01000463
[OKOK] human gut metagenome; human gut
589
680
+
Ser
GCT
[ENA]
¢þ
>WENV182859013
OKOK01000051
[OKOK] human gut metagenome; human gut
669
742
+
Trp
CCA
[ENA]
¢þ
>WENV182859014
OKOK01000051
[OKOK] human gut metagenome; human gut
779
852
+
His
GTG
[ENA]
¢þ
>WENV182859015
OKOK01000051
[OKOK] human gut metagenome; human gut
865
938
+
Gln
TTG
[ENA]
¢þ
>WENV182859016
OKOK01000051
[OKOK] human gut metagenome; human gut
963
1033
+
Cys
GCA
[ENA]
¢þ
>WENV182859017
OKOK01000051
[OKOK] human gut metagenome; human gut
1046
1131
+
Leu
CAA
[ENA]
¢þ
>WENV182859023
OKOK01000255
[OKOK] human gut metagenome; human gut
1067
994
-
Ile2
CAT
[ENA]
¢þ
>WENV182859001
OKOK01000011
[OKOK] human gut metagenome; human gut
1308
1236
-
Thr
CGT
[ENA]
¢þ
>WENV182859020
OKOK01000086
[OKOK] human gut metagenome; human gut
4022
4095
+
Arg
CCG
[ENA]
¢þ
>WENV182859003
OKOK01000021
[OKOK] human gut metagenome; human gut
4541
4452
-
Ser
CGA
[ENA]
¢þ
>WENV182859018
OKOK01000060
[OKOK] human gut metagenome; human gut
13966
13895
-
Trp
CCA
[ENA]
¢þ
>WENV182859006
OKOK01000043
[OKOK] human gut metagenome; human gut
20070
19995
-
Arg
TCT
[ENA]
¢þ
>WENV182859004
OKOK01000029
[OKOK] human gut metagenome; human gut
21468
21397
-
Cys
GCA
[ENA]
¢þ
>WENV182859005
OKOK01000030
[OKOK] human gut metagenome; human gut
30185
30258
+
Thr
GGT
[ENA]
¢þ
>WENV182859002
OKOK01000021
[OKOK] human gut metagenome; human gut
36115
36040
-
Asn
GTT
[ENA]
¢þ
>WENV182858999
OKOK01000006
[OKOK] human gut metagenome; human gut
48101
48176
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK