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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKOW] human gut metagenome; human gut
HIT:
86 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182860519
OKOW01004115
[OKOW] human gut metagenome; human gut
2
76
+
Gly
GCC
[ENA]
¢þ
>WENV182860510
OKOW01002546
[OKOW] human gut metagenome; human gut
34
108
+
Gln
CTG
[ENA]
¢þ
>WENV182860520
OKOW01004115
[OKOW] human gut metagenome; human gut
80
153
+
Gly
TCC
[ENA]
¢þ
>WENV182860536
OKOW01006166
[OKOW] human gut metagenome; human gut
82
9
-
Gly
CCC
[ENA]
¢þ
>WENV182860532
OKOW01005513
[OKOW] human gut metagenome; human gut
106
30
-
Val
GAC
[ENA]
¢þ
>WENV182860516
OKOW01003454
[OKOW] human gut metagenome; human gut
122
49
-
Ala
TGC
[ENA]
¢þ
>WENV182860531
OKOW01005415
[OKOW] human gut metagenome; human gut
124
49
-
Thr
TGT
[ENA]
¢þ
>WENV182860488
OKOW01001327
[OKOW] human gut metagenome; human gut
124
50
-
Lys
TTT
[ENA]
¢þ
>WENV182860535
OKOW01006057
[OKOW] human gut metagenome; human gut
124
51
-
Arg
ACG
[ENA]
¢þ
>WENV182860457
OKOW01000022
[OKOW] human gut metagenome; human gut
161
85
-
Met
CAT
[ENA]
¢þ
>WENV182860537
OKOW01006232
[OKOW] human gut metagenome; human gut
164
81
-
Leu
TAG
[ENA]
¢þ
>WENV182860525
OKOW01004172
[OKOW] human gut metagenome; human gut
165
90
-
Ala
CGC
[ENA]
¢þ
>WENV182860477
OKOW01000715
[OKOW] human gut metagenome; human gut
166
93
-
Gly
TCC
[ENA]
¢þ
>WENV182860530
OKOW01005381
[OKOW] human gut metagenome; human gut
185
268
+
Leu
CAG
[ENA]
¢þ
>WENV182860464
OKOW01000262
[OKOW] human gut metagenome; human gut
187
114
-
Thr
GGT
[ENA]
¢þ
>WENV182860487
OKOW01001327
[OKOW] human gut metagenome; human gut
203
129
-
Val
TAC
[ENA]
¢þ
>WENV182860481
OKOW01000877
[OKOW] human gut metagenome; human gut
217
290
+
Gly
GCC
[ENA]
¢þ
>WENV182860521
OKOW01004115
[OKOW] human gut metagenome; human gut
233
309
+
Arg
TCT
[ENA]
¢þ
>WENV182860456
OKOW01000022
[OKOW] human gut metagenome; human gut
242
167
-
Thr
GGT
[ENA]
¢þ
>WENV182860508
OKOW01002030
[OKOW] human gut metagenome; human gut
247
153
-
SeC
TCA
[ENA]
¢þ
>WENV182860476
OKOW01000715
[OKOW] human gut metagenome; human gut
253
177
-
Pro
TGG
[ENA]
¢þ
>WENV182860529
OKOW01004898
[OKOW] human gut metagenome; human gut
312
385
+
Pro
TGG
[ENA]
¢þ
>WENV182860522
OKOW01004115
[OKOW] human gut metagenome; human gut
314
389
+
His
GTG
[ENA]
¢þ
>WENV182860482
OKOW01000877
[OKOW] human gut metagenome; human gut
318
389
+
Cys
GCA
[ENA]
¢þ
>WENV182860504
OKOW01001810
[OKOW] human gut metagenome; human gut
339
265
-
Arg
CCT
[ENA]
¢þ
>WENV182860455
OKOW01000022
[OKOW] human gut metagenome; human gut
349
274
-
fMet
CAT
[ENA]
¢þ
>WENV182860493
OKOW01001446
[OKOW] human gut metagenome; human gut
380
306
-
Arg
CCG
[ENA]
¢þ
>WENV182860483
OKOW01000877
[OKOW] human gut metagenome; human gut
390
464
+
Val
CAC
[ENA]
¢þ
>WENV182860513
OKOW01002723
[OKOW] human gut metagenome; human gut
402
327
-
Gly
GCC
[ENA]
¢þ
>WENV182860518
OKOW01004080
[OKOW] human gut metagenome; human gut
411
322
-
Ser
CGA
[ENA]
¢þ
>WENV182860501
OKOW01001750
[OKOW] human gut metagenome; human gut
418
493
+
Arg
TCT
[ENA]
¢þ
>WENV182860534
OKOW01006057
[OKOW] human gut metagenome; human gut
423
333
-
Ser
GCT
[ENA]
¢þ
>WENV182860533
OKOW01005908
[OKOW] human gut metagenome; human gut
435
349
-
Leu
GAG
[ENA]
¢þ
>WENV182860454
OKOW01000022
[OKOW] human gut metagenome; human gut
439
355
-
Tyr
GTA
[ENA]
¢þ
>WENV182860528
OKOW01004743
[OKOW] human gut metagenome; human gut
470
543
+
Asn
GTT
[ENA]
¢þ
>WENV182860463
OKOW01000262
[OKOW] human gut metagenome; human gut
472
391
-
Tyr
GTA
[ENA]
¢þ
>WENV182860523
OKOW01004115
[OKOW] human gut metagenome; human gut
474
549
+
Lys
TTT
[ENA]
¢þ
>WENV182860484
OKOW01000968
[OKOW] human gut metagenome; human gut
488
415
-
Gly
CCC
[ENA]
¢þ
>WENV182860453
OKOW01000022
[OKOW] human gut metagenome; human gut
525
450
-
Thr
TGT
[ENA]
¢þ
>WENV182860517
OKOW01003728
[OKOW] human gut metagenome; human gut
546
619
+
Ala
GGC
[ENA]
¢þ
>WENV182860466
OKOW01000331
[OKOW] human gut metagenome; human gut
547
620
+
Arg
CCG
[ENA]
¢þ
>WENV182860491
OKOW01001420
[OKOW] human gut metagenome; human gut
547
633
+
Leu
CAG
[ENA]
¢þ
>WENV182860515
OKOW01002821
[OKOW] human gut metagenome; human gut
555
627
+
Gly
TCC
[ENA]
¢þ
>WENV182860524
OKOW01004115
[OKOW] human gut metagenome; human gut
560
643
+
Leu
TAG
[ENA]
¢þ
>WENV182860506
OKOW01001904
[OKOW] human gut metagenome; human gut
572
501
-
Gly
CCC
[ENA]
¢þ
>WENV182860505
OKOW01001828
[OKOW] human gut metagenome; human gut
574
649
+
Val
TAC
[ENA]
¢þ
>WENV182860502
OKOW01001759
[OKOW] human gut metagenome; human gut
586
499
-
Ser
TGA
[ENA]
¢þ
>WENV182860527
OKOW01004396
[OKOW] human gut metagenome; human gut
605
521
-
Leu
CAA
[ENA]
¢þ
>WENV182860474
OKOW01000650
[OKOW] human gut metagenome; human gut
644
719
+
Val
TAC
[ENA]
¢þ
>WENV182860492
OKOW01001420
[OKOW] human gut metagenome; human gut
677
753
+
Pro
TGG
[ENA]
¢þ
>WENV182860526
OKOW01004238
[OKOW] human gut metagenome; human gut
696
621
-
Ala
GGC
[ENA]
¢þ
>WENV182860475
OKOW01000650
[OKOW] human gut metagenome; human gut
724
799
+
Lys
TTT
[ENA]
¢þ
>WENV182860494
OKOW01001464
[OKOW] human gut metagenome; human gut
742
652
-
Ser
GCT
[ENA]
¢þ
>WENV182860465
OKOW01000313
[OKOW] human gut metagenome; human gut
743
818
+
Asn
GTT
[ENA]
¢þ
>WENV182860499
OKOW01001549
[OKOW] human gut metagenome; human gut
784
708
-
Pro
GGG
[ENA]
¢þ
>WENV182860509
OKOW01002340
[OKOW] human gut metagenome; human gut
792
718
-
Arg
CCT
[ENA]
¢þ
>WENV182860486
OKOW01001003
[OKOW] human gut metagenome; human gut
797
722
-
Trp
CCA
[ENA]
¢þ
>WENV182860512
OKOW01002615
[OKOW] human gut metagenome; human gut
809
884
+
Phe
GAA
[ENA]
¢þ
>WENV182860507
OKOW01001971
[OKOW] human gut metagenome; human gut
829
904
+
His
GTG
[ENA]
¢þ
>WENV182860514
OKOW01002813
[OKOW] human gut metagenome; human gut
860
933
+
Thr
TGT
[ENA]
¢þ
>WENV182860460
OKOW01000160
[OKOW] human gut metagenome; human gut
862
937
+
Glu
TTC
[ENA]
¢þ
>WENV182860485
OKOW01001003
[OKOW] human gut metagenome; human gut
882
806
-
Asp
GTC
[ENA]
¢þ
>WENV182860490
OKOW01001390
[OKOW] human gut metagenome; human gut
933
1019
+
Leu
GAG
[ENA]
¢þ
>WENV182860511
OKOW01002614
[OKOW] human gut metagenome; human gut
967
893
-
Lys
CTT
[ENA]
¢þ
>WENV182860495
OKOW01001467
[OKOW] human gut metagenome; human gut
997
922
-
Thr
CGT
[ENA]
¢þ
>WENV182860480
OKOW01000769
[OKOW] human gut metagenome; human gut
1002
1078
+
fMet
CAT
[ENA]
¢þ
>WENV182860467
OKOW01000563
[OKOW] human gut metagenome; human gut
1030
1116
+
Ser
CGA
[ENA]
¢þ
>WENV182860503
OKOW01001784
[OKOW] human gut metagenome; human gut
1044
1131
+
Ser
GGA
[ENA]
¢þ
>WENV182860497
OKOW01001491
[OKOW] human gut metagenome; human gut
1060
1132
+
Gln
CTG
[ENA]
¢þ
>WENV182860500
OKOW01001670
[OKOW] human gut metagenome; human gut
1095
1170
+
Ile
GAT
[ENA]
¢þ
>WENV182860498
OKOW01001491
[OKOW] human gut metagenome; human gut
1266
1341
+
Glu
CTC
[ENA]
¢þ
>WENV182860461
OKOW01000172
[OKOW] human gut metagenome; human gut
1275
1365
+
Ser
CGA
[ENA]
¢þ
>WENV182860496
OKOW01001472
[OKOW] human gut metagenome; human gut
1303
1224
-
Gln
TTG
[ENA]
¢þ
>WENV182860489
OKOW01001335
[OKOW] human gut metagenome; human gut
1331
1407
+
Arg
CCT
[ENA]
¢þ
>WENV182860470
OKOW01000592
[OKOW] human gut metagenome; human gut
1350
1423
+
Glu
TTC
[ENA]
¢þ
>WENV182860473
OKOW01000636
[OKOW] human gut metagenome; human gut
1377
1462
+
Ser
GGA
[ENA]
¢þ
>WENV182860462
OKOW01000221
[OKOW] human gut metagenome; human gut
1573
1661
+
Ser
TGA
[ENA]
¢þ
>WENV182860479
OKOW01000766
[OKOW] human gut metagenome; human gut
1751
1663
-
Leu
TAA
[ENA]
¢þ
>WENV182860471
OKOW01000592
[OKOW] human gut metagenome; human gut
1787
1861
+
Asp
GTC
[ENA]
¢þ
>WENV182860478
OKOW01000766
[OKOW] human gut metagenome; human gut
1840
1766
-
Cys
GCA
[ENA]
¢þ
>WENV182860468
OKOW01000590
[OKOW] human gut metagenome; human gut
1891
1964
+
Met
CAT
[ENA]
¢þ
>WENV182860472
OKOW01000592
[OKOW] human gut metagenome; human gut
1921
1998
+
Phe
GAA
[ENA]
¢þ
>WENV182860458
OKOW01000061
[OKOW] human gut metagenome; human gut
1960
1870
-
Tyr
GTA
[ENA]
¢þ
>WENV182860469
OKOW01000590
[OKOW] human gut metagenome; human gut
1971
2046
+
Ala
TGC
[ENA]
¢þ
>WENV182860459
OKOW01000135
[OKOW] human gut metagenome; human gut
2579
2654
+
Lys
CTT
[ENA]
¢þ
>WENV182860452
OKOW01000010
[OKOW] human gut metagenome; human gut
13325
13241
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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