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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OKPC] human gut metagenome; human gut
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182861137
OKPC01000296
[OKPC] human gut metagenome; human gut
60
132
+
Phe
GAA
[ENA]
¢þ
>WENV182861129
OKPC01000032
[OKPC] human gut metagenome; human gut
88
3
-
Leu
TAA
[ENA]
¢þ
>WENV182861132
OKPC01000106
[OKPC] human gut metagenome; human gut
132
218
+
Leu
AAG
[ENA]
¢þ
>WENV182861138
OKPC01000296
[OKPC] human gut metagenome; human gut
142
214
+
Gly
TCC
[ENA]
¢þ
>WENV182861128
OKPC01000032
[OKPC] human gut metagenome; human gut
194
123
-
Gly
GCC
[ENA]
¢þ
>WENV182861139
OKPC01000296
[OKPC] human gut metagenome; human gut
227
302
+
Ile
GAT
[ENA]
¢þ
>WENV182861146
OKPC01001470
[OKPC] human gut metagenome; human gut
240
168
-
Thr
GGT
[ENA]
¢þ
>WENV182861127
OKPC01000032
[OKPC] human gut metagenome; human gut
292
220
-
Thr
TGT
[ENA]
¢þ
>WENV182861136
OKPC01000209
[OKPC] human gut metagenome; human gut
340
266
-
Thr
CGT
[ENA]
¢þ
>WENV182861140
OKPC01000296
[OKPC] human gut metagenome; human gut
344
431
+
Ser
GCT
[ENA]
¢þ
>WENV182861145
OKPC01001445
[OKPC] human gut metagenome; human gut
370
295
-
Asn
GTT
[ENA]
¢þ
>WENV182861126
OKPC01000032
[OKPC] human gut metagenome; human gut
387
306
-
Leu
TAG
[ENA]
¢þ
>WENV182861125
OKPC01000032
[OKPC] human gut metagenome; human gut
470
396
-
Lys
TTT
[ENA]
¢þ
>WENV182861144
OKPC01001445
[OKPC] human gut metagenome; human gut
478
405
-
Glu
TTC
[ENA]
¢þ
>WENV182861135
OKPC01000181
[OKPC] human gut metagenome; human gut
531
604
+
fMet
CAT
[ENA]
¢þ
>WENV182861124
OKPC01000032
[OKPC] human gut metagenome; human gut
559
487
-
Asp
GTC
[ENA]
¢þ
>WENV182861143
OKPC01000923
[OKPC] human gut metagenome; human gut
616
686
+
Cys
GCA
[ENA]
¢þ
>WENV182861123
OKPC01000032
[OKPC] human gut metagenome; human gut
662
588
-
Val
TAC
[ENA]
¢þ
>WENV182861133
OKPC01000109
[OKPC] human gut metagenome; human gut
836
762
-
Ala
TGC
[ENA]
¢þ
>WENV182861142
OKPC01000595
[OKPC] human gut metagenome; human gut
1031
949
-
Leu
CAG
[ENA]
¢þ
>WENV182861141
OKPC01000536
[OKPC] human gut metagenome; human gut
1097
1024
-
Pro
TGG
[ENA]
¢þ
>WENV182861134
OKPC01000161
[OKPC] human gut metagenome; human gut
1185
1260
+
Arg
TCT
[ENA]
¢þ
>WENV182861131
OKPC01000047
[OKPC] human gut metagenome; human gut
1284
1201
-
Leu
CAA
[ENA]
¢þ
>WENV182861130
OKPC01000047
[OKPC] human gut metagenome; human gut
1369
1296
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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