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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKPE] human gut metagenome; human gut
HIT:
147 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182861262
OKPE01000001
[OKPE] human gut metagenome; human gut
7
83
+
fMet
CAT
[ENA]
¢þ
>WENV182861393
OKPE01002504
[OKPE] human gut metagenome; human gut
59
134
+
Thr
CGT
[ENA]
¢þ
>WENV182861404
OKPE01002900
[OKPE] human gut metagenome; human gut
66
138
+
Phe
GAA
[ENA]
¢þ
>WENV182861354
OKPE01000372
[OKPE] human gut metagenome; human gut
72
156
+
Leu
TAG
[ENA]
¢þ
>WENV182861299
OKPE01000029
[OKPE] human gut metagenome; human gut
86
161
+
Gly
GCC
[ENA]
¢þ
>WENV182861381
OKPE01002018
[OKPE] human gut metagenome; human gut
93
10
-
Leu
CAA
[ENA]
¢þ
>WENV182861388
OKPE01002425
[OKPE] human gut metagenome; human gut
97
169
+
Thr
TGT
[ENA]
¢þ
>WENV182861398
OKPE01002715
[OKPE] human gut metagenome; human gut
117
42
-
Val
TAC
[ENA]
¢þ
>WENV182861326
OKPE01000089
[OKPE] human gut metagenome; human gut
130
56
-
Thr
TGT
[ENA]
¢þ
>WENV182861325
OKPE01000086
[OKPE] human gut metagenome; human gut
135
50
-
Ser
GGA
[ENA]
¢þ
>WENV182861292
OKPE01000017
[OKPE] human gut metagenome; human gut
137
64
-
Asn
GTT
[ENA]
¢þ
>WENV182861403
OKPE01002826
[OKPE] human gut metagenome; human gut
140
65
-
Asp
GTC
[ENA]
¢þ
>WENV182861387
OKPE01002239
[OKPE] human gut metagenome; human gut
141
67
-
Pro
TGG
[ENA]
¢þ
>WENV182861405
OKPE01002900
[OKPE] human gut metagenome; human gut
158
228
+
Gly
TCC
[ENA]
¢þ
>WENV182861397
OKPE01002715
[OKPE] human gut metagenome; human gut
195
121
-
Glu
TTC
[ENA]
¢þ
>WENV182861389
OKPE01002425
[OKPE] human gut metagenome; human gut
203
274
+
Gly
GCC
[ENA]
¢þ
>WENV182861374
OKPE01001095
[OKPE] human gut metagenome; human gut
206
133
-
Arg
CCG
[ENA]
¢þ
>WENV182861355
OKPE01000372
[OKPE] human gut metagenome; human gut
231
302
+
Gly
GCC
[ENA]
¢þ
>WENV182861402
OKPE01002826
[OKPE] human gut metagenome; human gut
238
147
-
Ser
TGA
[ENA]
¢þ
>WENV182861406
OKPE01002900
[OKPE] human gut metagenome; human gut
242
317
+
Ile
GAT
[ENA]
¢þ
>WENV182861386
OKPE01002239
[OKPE] human gut metagenome; human gut
244
168
-
Arg
ACG
[ENA]
¢þ
>WENV182861377
OKPE01001758
[OKPE] human gut metagenome; human gut
254
181
-
Arg
CCT
[ENA]
¢þ
>WENV182861380
OKPE01001965
[OKPE] human gut metagenome; human gut
271
197
-
Val
TAC
[ENA]
¢þ
>WENV182861396
OKPE01002715
[OKPE] human gut metagenome; human gut
279
204
-
Asn
GTT
[ENA]
¢þ
>WENV182861356
OKPE01000372
[OKPE] human gut metagenome; human gut
313
400
+
Leu
TAA
[ENA]
¢þ
>WENV182861401
OKPE01002826
[OKPE] human gut metagenome; human gut
320
247
-
Ile2
CAT
[ENA]
¢þ
>WENV182861390
OKPE01002425
[OKPE] human gut metagenome; human gut
334
409
+
Arg
ACG
[ENA]
¢þ
>WENV182861385
OKPE01002239
[OKPE] human gut metagenome; human gut
345
257
-
Leu
TAA
[ENA]
¢þ
>WENV182861407
OKPE01002900
[OKPE] human gut metagenome; human gut
345
434
+
Ser
GCT
[ENA]
¢þ
>WENV182861375
OKPE01001337
[OKPE] human gut metagenome; human gut
357
432
+
Arg
TCT
[ENA]
¢þ
>WENV182861395
OKPE01002715
[OKPE] human gut metagenome; human gut
361
287
-
Gly
GCC
[ENA]
¢þ
>WENV182861357
OKPE01000372
[OKPE] human gut metagenome; human gut
410
486
+
Arg
ACG
[ENA]
¢þ
>WENV182861391
OKPE01002425
[OKPE] human gut metagenome; human gut
412
487
+
Pro
TGG
[ENA]
¢þ
>WENV182861400
OKPE01002826
[OKPE] human gut metagenome; human gut
421
347
-
Met
CAT
[ENA]
¢þ
>WENV182861394
OKPE01002674
[OKPE] human gut metagenome; human gut
424
336
-
Ser
TGA
[ENA]
¢þ
>WENV182861384
OKPE01002239
[OKPE] human gut metagenome; human gut
431
357
-
Gly
GCC
[ENA]
¢þ
>WENV182861408
OKPE01002900
[OKPE] human gut metagenome; human gut
437
510
+
Glu
TTC
[ENA]
¢þ
>WENV182861367
OKPE01000779
[OKPE] human gut metagenome; human gut
459
372
-
Ser
CGA
[ENA]
¢þ
>WENV182861392
OKPE01002425
[OKPE] human gut metagenome; human gut
512
587
+
Met
CAT
[ENA]
¢þ
>WENV182861383
OKPE01002239
[OKPE] human gut metagenome; human gut
517
435
-
Leu
TAG
[ENA]
¢þ
>WENV182861399
OKPE01002826
[OKPE] human gut metagenome; human gut
521
446
-
Ala
TGC
[ENA]
¢þ
>WENV182861358
OKPE01000372
[OKPE] human gut metagenome; human gut
534
605
+
Gly
GCC
[ENA]
¢þ
>WENV182861376
OKPE01001691
[OKPE] human gut metagenome; human gut
553
463
-
Ser
CGA
[ENA]
¢þ
>WENV182861382
OKPE01002239
[OKPE] human gut metagenome; human gut
601
526
-
Lys
TTT
[ENA]
¢þ
>WENV182861359
OKPE01000372
[OKPE] human gut metagenome; human gut
609
684
+
Pro
CGG
[ENA]
¢þ
>WENV182861379
OKPE01001965
[OKPE] human gut metagenome; human gut
615
524
-
Ser
GGA
[ENA]
¢þ
>WENV182861378
OKPE01001965
[OKPE] human gut metagenome; human gut
696
622
-
Asn
GTT
[ENA]
¢þ
>WENV182861361
OKPE01000502
[OKPE] human gut metagenome; human gut
837
911
+
Ala
CGC
[ENA]
¢þ
>WENV182861362
OKPE01000502
[OKPE] human gut metagenome; human gut
932
1004
+
Ala
GGC
[ENA]
¢þ
>WENV182861373
OKPE01000992
[OKPE] human gut metagenome; human gut
1028
1100
+
Thr
GGT
[ENA]
¢þ
>WENV182861360
OKPE01000485
[OKPE] human gut metagenome; human gut
1096
1166
+
Gly
CCC
[ENA]
¢þ
>WENV182861366
OKPE01000753
[OKPE] human gut metagenome; human gut
1293
1220
-
Glu
CTC
[ENA]
¢þ
>WENV182861372
OKPE01000869
[OKPE] human gut metagenome; human gut
1386
1300
-
Leu
CAA
[ENA]
¢þ
>WENV182861371
OKPE01000869
[OKPE] human gut metagenome; human gut
1502
1432
-
Cys
GCA
[ENA]
¢þ
>WENV182861365
OKPE01000704
[OKPE] human gut metagenome; human gut
1594
1679
+
Leu
CAG
[ENA]
¢þ
>WENV182861349
OKPE01000241
[OKPE] human gut metagenome; human gut
1610
1536
-
Arg
CCT
[ENA]
¢þ
>WENV182861370
OKPE01000869
[OKPE] human gut metagenome; human gut
1616
1545
-
Gln
TTG
[ENA]
¢þ
>WENV182861363
OKPE01000503
[OKPE] human gut metagenome; human gut
1620
1693
+
Gln
CTG
[ENA]
¢þ
>WENV182861350
OKPE01000277
[OKPE] human gut metagenome; human gut
1631
1704
+
Glu
TTC
[ENA]
¢þ
>WENV182861369
OKPE01000869
[OKPE] human gut metagenome; human gut
1697
1624
-
His
GTG
[ENA]
¢þ
>WENV182861318
OKPE01000076
[OKPE] human gut metagenome; human gut
1704
1631
-
Ala
TGC
[ENA]
¢þ
>WENV182861329
OKPE01000091
[OKPE] human gut metagenome; human gut
1753
1678
-
His
GTG
[ENA]
¢þ
>WENV182861368
OKPE01000869
[OKPE] human gut metagenome; human gut
1779
1708
-
Trp
CCA
[ENA]
¢þ
>WENV182861351
OKPE01000277
[OKPE] human gut metagenome; human gut
2066
2140
+
Asp
GTC
[ENA]
¢þ
>WENV182861352
OKPE01000277
[OKPE] human gut metagenome; human gut
2200
2277
+
Phe
GAA
[ENA]
¢þ
>WENV182861364
OKPE01000544
[OKPE] human gut metagenome; human gut
2433
2359
-
Lys
TTT
[ENA]
¢þ
>WENV182861324
OKPE01000085
[OKPE] human gut metagenome; human gut
2494
2411
-
Leu
CAG
[ENA]
¢þ
>WENV182861323
OKPE01000082
[OKPE] human gut metagenome; human gut
2654
2733
+
Gln
TTG
[ENA]
¢þ
>WENV182861347
OKPE01000183
[OKPE] human gut metagenome; human gut
3024
2950
-
Leu
TAA
[ENA]
¢þ
>WENV182861346
OKPE01000179
[OKPE] human gut metagenome; human gut
3288
3371
+
Leu
TAG
[ENA]
¢þ
>WENV182861345
OKPE01000165
[OKPE] human gut metagenome; human gut
3603
3530
-
Ala
GGC
[ENA]
¢þ
>WENV182861344
OKPE01000165
[OKPE] human gut metagenome; human gut
3748
3673
-
Ala
GGC
[ENA]
¢þ
>WENV182861348
OKPE01000201
[OKPE] human gut metagenome; human gut
3809
3722
-
Ser
CGA
[ENA]
¢þ
>WENV182861328
OKPE01000091
[OKPE] human gut metagenome; human gut
3836
3911
+
Arg
TCT
[ENA]
¢þ
>WENV182861290
OKPE01000012
[OKPE] human gut metagenome; human gut
4109
4182
+
Gly
CCC
[ENA]
¢þ
>WENV182861340
OKPE01000120
[OKPE] human gut metagenome; human gut
4769
4844
+
Thr
CGT
[ENA]
¢þ
>WENV182861353
OKPE01000282
[OKPE] human gut metagenome; human gut
5070
4997
-
Asn
GTT
[ENA]
¢þ
>WENV182861317
OKPE01000075
[OKPE] human gut metagenome; human gut
5602
5528
-
Ile2
CAT
[ENA]
¢þ
>WENV182861306
OKPE01000044
[OKPE] human gut metagenome; human gut
6158
6084
-
Arg
TCT
[ENA]
¢þ
>WENV182861338
OKPE01000113
[OKPE] human gut metagenome; human gut
6491
6565
+
Ala
CGC
[ENA]
¢þ
>WENV182861341
OKPE01000143
[OKPE] human gut metagenome; human gut
6939
6851
-
Leu
AAG
[ENA]
¢þ
>WENV182861321
OKPE01000079
[OKPE] human gut metagenome; human gut
7398
7325
-
Arg
ACG
[ENA]
¢þ
>WENV182861343
OKPE01000159
[OKPE] human gut metagenome; human gut
7609
7525
-
Leu
CAA
[ENA]
¢þ
>WENV182861320
OKPE01000079
[OKPE] human gut metagenome; human gut
7697
7607
-
Ser
GCT
[ENA]
¢þ
>WENV182861342
OKPE01000148
[OKPE] human gut metagenome; human gut
8137
8211
+
Lys
CTT
[ENA]
¢þ
>WENV182861314
OKPE01000067
[OKPE] human gut metagenome; human gut
9093
9167
+
Pro
GGG
[ENA]
¢þ
>WENV182861337
OKPE01000094
[OKPE] human gut metagenome; human gut
9204
9131
-
Trp
CCA
[ENA]
¢þ
>WENV182861295
OKPE01000022
[OKPE] human gut metagenome; human gut
10308
10235
-
Ala
TGC
[ENA]
¢þ
>WENV182861333
OKPE01000092
[OKPE] human gut metagenome; human gut
10365
10291
-
Val
GAC
[ENA]
¢þ
>WENV182861294
OKPE01000022
[OKPE] human gut metagenome; human gut
10424
10350
-
Ile
GAT
[ENA]
¢þ
>WENV182861332
OKPE01000092
[OKPE] human gut metagenome; human gut
10437
10366
-
Cys
GCA
[ENA]
¢þ
>WENV182861331
OKPE01000092
[OKPE] human gut metagenome; human gut
10538
10465
-
Gly
GCC
[ENA]
¢þ
>WENV182861330
OKPE01000092
[OKPE] human gut metagenome; human gut
11038
11112
+
Val
CAC
[ENA]
¢þ
>WENV182861312
OKPE01000065
[OKPE] human gut metagenome; human gut
11898
11973
+
Val
TAC
[ENA]
¢þ
>WENV182861339
OKPE01000116
[OKPE] human gut metagenome; human gut
11921
11997
+
Ile
GAT
[ENA]
¢þ
>WENV182861327
OKPE01000090
[OKPE] human gut metagenome; human gut
12406
12335
-
Gly
CCC
[ENA]
¢þ
>WENV182861304
OKPE01000037
[OKPE] human gut metagenome; human gut
12694
12770
+
Pro
CGG
[ENA]
¢þ
>WENV182861287
OKPE01000008
[OKPE] human gut metagenome; human gut
12894
12822
-
Glu
TTC
[ENA]
¢þ
>WENV182861289
OKPE01000010
[OKPE] human gut metagenome; human gut
13883
13809
-
Leu
CAA
[ENA]
¢þ
>WENV182861308
OKPE01000047
[OKPE] human gut metagenome; human gut
14314
14389
+
Arg
CCG
[ENA]
¢þ
>WENV182861336
OKPE01000094
[OKPE] human gut metagenome; human gut
14395
14321
-
Met
CAT
[ENA]
¢þ
>WENV182861335
OKPE01000094
[OKPE] human gut metagenome; human gut
14531
14458
-
Thr
GGT
[ENA]
¢þ
>WENV182861334
OKPE01000094
[OKPE] human gut metagenome; human gut
14816
14735
-
Tyr
GTA
[ENA]
¢þ
>WENV182861322
OKPE01000080
[OKPE] human gut metagenome; human gut
15120
15195
+
Trp
CCA
[ENA]
¢þ
>WENV182861319
OKPE01000079
[OKPE] human gut metagenome; human gut
15338
15253
-
Ser
TGA
[ENA]
¢þ
>WENV182861284
OKPE01000008
[OKPE] human gut metagenome; human gut
15390
15464
+
Asp
GTC
[ENA]
¢þ
>WENV182861310
OKPE01000058
[OKPE] human gut metagenome; human gut
15781
15706
-
Thr
TGT
[ENA]
¢þ
>WENV182861293
OKPE01000018
[OKPE] human gut metagenome; human gut
15878
15963
+
Leu
CAG
[ENA]
¢þ
>WENV182861301
OKPE01000036
[OKPE] human gut metagenome; human gut
16380
16472
+
Ser
GCT
[ENA]
¢þ
>WENV182861315
OKPE01000071
[OKPE] human gut metagenome; human gut
16597
16524
-
Arg
CCG
[ENA]
¢þ
>WENV182861300
OKPE01000029
[OKPE] human gut metagenome; human gut
17109
17184
+
Pro
GGG
[ENA]
¢þ
>WENV182861302
OKPE01000036
[OKPE] human gut metagenome; human gut
17149
17221
+
Trp
CCA
[ENA]
¢þ
>WENV182861291
OKPE01000016
[OKPE] human gut metagenome; human gut
17245
17333
+
Leu
GAG
[ENA]
¢þ
>WENV182861303
OKPE01000036
[OKPE] human gut metagenome; human gut
17344
17415
+
Thr
CGT
[ENA]
¢þ
>WENV182861316
OKPE01000073
[OKPE] human gut metagenome; human gut
18815
18887
+
Gln
CTG
[ENA]
¢þ
>WENV182861296
OKPE01000025
[OKPE] human gut metagenome; human gut
21050
20977
-
Arg
CCT
[ENA]
¢þ
>WENV182861278
OKPE01000003
[OKPE] human gut metagenome; human gut
21195
21119
-
Pro
TGG
[ENA]
¢þ
>WENV182861313
OKPE01000066
[OKPE] human gut metagenome; human gut
21611
21684
+
Asn
GTT
[ENA]
¢þ
>WENV182861311
OKPE01000060
[OKPE] human gut metagenome; human gut
23428
23355
-
Gly
TCC
[ENA]
¢þ
>WENV182861307
OKPE01000046
[OKPE] human gut metagenome; human gut
23898
23971
+
Gly
TCC
[ENA]
¢þ
>WENV182861268
OKPE01000002
[OKPE] human gut metagenome; human gut
27403
27485
+
Tyr
GTA
[ENA]
¢þ
>WENV182861269
OKPE01000002
[OKPE] human gut metagenome; human gut
27562
27636
+
Met
CAT
[ENA]
¢þ
>WENV182861305
OKPE01000043
[OKPE] human gut metagenome; human gut
27835
27909
+
Pro
TGG
[ENA]
¢þ
>WENV182861309
OKPE01000047
[OKPE] human gut metagenome; human gut
30306
30379
+
Gly
GCC
[ENA]
¢þ
>WENV182861277
OKPE01000003
[OKPE] human gut metagenome; human gut
34074
34001
-
Ala
GGC
[ENA]
¢þ
>WENV182861270
OKPE01000002
[OKPE] human gut metagenome; human gut
35318
35406
+
Ser
GCT
[ENA]
¢þ
>WENV182861280
OKPE01000005
[OKPE] human gut metagenome; human gut
35644
35717
+
Thr
CGT
[ENA]
¢þ
>WENV182861281
OKPE01000005
[OKPE] human gut metagenome; human gut
35804
35886
+
Leu
TAG
[ENA]
¢þ
>WENV182861276
OKPE01000003
[OKPE] human gut metagenome; human gut
37086
37015
-
Gln
TTG
[ENA]
¢þ
>WENV182861285
OKPE01000008
[OKPE] human gut metagenome; human gut
39140
39216
+
Asp
GTC
[ENA]
¢þ
>WENV182861282
OKPE01000005
[OKPE] human gut metagenome; human gut
41350
41423
+
Thr
CGT
[ENA]
¢þ
>WENV182861297
OKPE01000028
[OKPE] human gut metagenome; human gut
42264
42337
+
Gly
GCC
[ENA]
¢þ
>WENV182861298
OKPE01000028
[OKPE] human gut metagenome; human gut
42364
42435
+
Cys
GCA
[ENA]
¢þ
>WENV182861288
OKPE01000010
[OKPE] human gut metagenome; human gut
50556
50476
-
Leu
TAA
[ENA]
¢þ
>WENV182861267
OKPE01000001
[OKPE] human gut metagenome; human gut
55226
55152
-
Lys
CTT
[ENA]
¢þ
>WENV182861283
OKPE01000007
[OKPE] human gut metagenome; human gut
61521
61596
+
His
GTG
[ENA]
¢þ
>WENV182861279
OKPE01000004
[OKPE] human gut metagenome; human gut
65402
65476
+
Val
TAC
[ENA]
¢þ
>WENV182861286
OKPE01000008
[OKPE] human gut metagenome; human gut
71370
71444
+
Ile2
CAT
[ENA]
¢þ
>WENV182861274
OKPE01000003
[OKPE] human gut metagenome; human gut
73488
73562
+
Arg
ACG
[ENA]
¢þ
>WENV182861275
OKPE01000003
[OKPE] human gut metagenome; human gut
73591
73665
+
Arg
ACG
[ENA]
¢þ
>WENV182861271
OKPE01000002
[OKPE] human gut metagenome; human gut
79483
79569
+
Ser
CGA
[ENA]
¢þ
>WENV182861266
OKPE01000001
[OKPE] human gut metagenome; human gut
94268
94195
-
Lys
TTT
[ENA]
¢þ
>WENV182861272
OKPE01000002
[OKPE] human gut metagenome; human gut
110504
110589
+
Ser
TGA
[ENA]
¢þ
>WENV182861263
OKPE01000001
[OKPE] human gut metagenome; human gut
115751
115838
+
Ser
GGA
[ENA]
¢þ
>WENV182861265
OKPE01000001
[OKPE] human gut metagenome; human gut
124537
124463
-
Gln
CTG
[ENA]
¢þ
>WENV182861264
OKPE01000001
[OKPE] human gut metagenome; human gut
124649
124576
-
Glu
CTC
[ENA]
¢þ
>WENV182861273
OKPE01000002
[OKPE] human gut metagenome; human gut
131983
131909
-
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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