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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKPI] human gut metagenome; human gut
HIT:
93 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182861934
OKPI01001695
[OKPI] human gut metagenome; human gut
68
141
+
Glu
TTC
[ENA]
¢þ
>WENV182861931
OKPI01001301
[OKPI] human gut metagenome; human gut
78
7
-
Gly
GCC
[ENA]
¢þ
>WENV182861925
OKPI01000305
[OKPI] human gut metagenome; human gut
102
177
+
Arg
CCT
[ENA]
¢þ
>WENV182861935
OKPI01001695
[OKPI] human gut metagenome; human gut
153
242
+
Ser
TGA
[ENA]
¢þ
>WENV182861927
OKPI01000809
[OKPI] human gut metagenome; human gut
156
70
-
Leu
GAG
[ENA]
¢þ
>WENV182861930
OKPI01001301
[OKPI] human gut metagenome; human gut
170
96
-
Lys
TTT
[ENA]
¢þ
>WENV182861933
OKPI01001613
[OKPI] human gut metagenome; human gut
223
151
-
Asn
GTT
[ENA]
¢þ
>WENV182861929
OKPI01001301
[OKPI] human gut metagenome; human gut
251
176
-
Thr
TGT
[ENA]
¢þ
>WENV182861936
OKPI01001695
[OKPI] human gut metagenome; human gut
275
350
+
fMet
CAT
[ENA]
¢þ
>WENV182861928
OKPI01001301
[OKPI] human gut metagenome; human gut
333
258
-
Val
TAC
[ENA]
¢þ
>WENV182861915
OKPI01000125
[OKPI] human gut metagenome; human gut
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182861937
OKPI01001695
[OKPI] human gut metagenome; human gut
387
462
+
Asp
GTC
[ENA]
¢þ
>WENV182861914
OKPI01000125
[OKPI] human gut metagenome; human gut
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182861938
OKPI01001695
[OKPI] human gut metagenome; human gut
466
543
+
Phe
GAA
[ENA]
¢þ
>WENV182861939
OKPI01001695
[OKPI] human gut metagenome; human gut
554
624
+
Gly
TCC
[ENA]
¢þ
>WENV182861940
OKPI01001695
[OKPI] human gut metagenome; human gut
638
711
+
Ile
GAT
[ENA]
¢þ
>WENV182861913
OKPI01000125
[OKPI] human gut metagenome; human gut
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182861912
OKPI01000125
[OKPI] human gut metagenome; human gut
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182861911
OKPI01000101
[OKPI] human gut metagenome; human gut
829
753
-
Arg
TCT
[ENA]
¢þ
>WENV182861932
OKPI01001324
[OKPI] human gut metagenome; human gut
878
803
-
Phe
GAA
[ENA]
¢þ
>WENV182861926
OKPI01000593
[OKPI] human gut metagenome; human gut
931
1006
+
Arg
TCT
[ENA]
¢þ
>WENV182861924
OKPI01000171
[OKPI] human gut metagenome; human gut
1983
1911
-
Ala
TGC
[ENA]
¢þ
>WENV182861885
OKPI01000027
[OKPI] human gut metagenome; human gut
2012
2099
+
Ser
GGA
[ENA]
¢þ
>WENV182861910
OKPI01000099
[OKPI] human gut metagenome; human gut
2025
1935
-
Ser
GCT
[ENA]
¢þ
>WENV182861923
OKPI01000171
[OKPI] human gut metagenome; human gut
2071
1997
-
Pro
TGG
[ENA]
¢þ
>WENV182861909
OKPI01000099
[OKPI] human gut metagenome; human gut
2102
2028
-
Asn
GTT
[ENA]
¢þ
>WENV182861922
OKPI01000171
[OKPI] human gut metagenome; human gut
2156
2083
-
Arg
ACG
[ENA]
¢þ
>WENV182861908
OKPI01000099
[OKPI] human gut metagenome; human gut
2185
2112
-
Gly
TCC
[ENA]
¢þ
>WENV182861921
OKPI01000171
[OKPI] human gut metagenome; human gut
2256
2171
-
Leu
TAA
[ENA]
¢þ
>WENV182861907
OKPI01000099
[OKPI] human gut metagenome; human gut
2278
2203
-
His
GTG
[ENA]
¢þ
>WENV182861920
OKPI01000171
[OKPI] human gut metagenome; human gut
2343
2272
-
Gly
GCC
[ENA]
¢þ
>WENV182861906
OKPI01000099
[OKPI] human gut metagenome; human gut
2365
2291
-
Phe
GAA
[ENA]
¢þ
>WENV182861919
OKPI01000171
[OKPI] human gut metagenome; human gut
2423
2348
-
Thr
TGT
[ENA]
¢þ
>WENV182861918
OKPI01000171
[OKPI] human gut metagenome; human gut
2512
2429
-
Leu
TAG
[ENA]
¢þ
>WENV182861905
OKPI01000099
[OKPI] human gut metagenome; human gut
2542
2469
-
fMet
CAT
[ENA]
¢þ
>WENV182861917
OKPI01000171
[OKPI] human gut metagenome; human gut
2601
2527
-
Lys
TTT
[ENA]
¢þ
>WENV182861904
OKPI01000099
[OKPI] human gut metagenome; human gut
2646
2554
-
Ser
TGA
[ENA]
¢þ
>WENV182861916
OKPI01000171
[OKPI] human gut metagenome; human gut
2680
2606
-
Val
TAC
[ENA]
¢þ
>WENV182861857
OKPI01000005
[OKPI] human gut metagenome; human gut
2923
2848
-
Ile2
CAT
[ENA]
¢þ
>WENV182861903
OKPI01000091
[OKPI] human gut metagenome; human gut
4019
3944
-
Ala
GGC
[ENA]
¢þ
>WENV182861902
OKPI01000091
[OKPI] human gut metagenome; human gut
4134
4059
-
Ala
GGC
[ENA]
¢þ
>WENV182861891
OKPI01000031
[OKPI] human gut metagenome; human gut
4550
4461
-
Ser
CGA
[ENA]
¢þ
>WENV182861887
OKPI01000031
[OKPI] human gut metagenome; human gut
5542
5617
+
Asn
GTT
[ENA]
¢þ
>WENV182861900
OKPI01000072
[OKPI] human gut metagenome; human gut
8397
8471
+
Asn
GTT
[ENA]
¢þ
>WENV182861901
OKPI01000072
[OKPI] human gut metagenome; human gut
8477
8552
+
Thr
TGT
[ENA]
¢þ
>WENV182861875
OKPI01000012
[OKPI] human gut metagenome; human gut
12190
12106
-
Leu
CAA
[ENA]
¢þ
>WENV182861899
OKPI01000053
[OKPI] human gut metagenome; human gut
19111
19025
-
Leu
CAG
[ENA]
¢þ
>WENV182861898
OKPI01000053
[OKPI] human gut metagenome; human gut
19231
19145
-
Leu
CAG
[ENA]
¢þ
>WENV182861897
OKPI01000053
[OKPI] human gut metagenome; human gut
19346
19260
-
Leu
CAG
[ENA]
¢þ
>WENV182861895
OKPI01000047
[OKPI] human gut metagenome; human gut
22633
22557
-
Asp
GTC
[ENA]
¢þ
>WENV182861850
OKPI01000002
[OKPI] human gut metagenome; human gut
25696
25769
+
Gly
CCC
[ENA]
¢þ
>WENV182861896
OKPI01000048
[OKPI] human gut metagenome; human gut
29354
29429
+
Thr
CGT
[ENA]
¢þ
>WENV182861892
OKPI01000034
[OKPI] human gut metagenome; human gut
31126
31201
+
Asn
GTT
[ENA]
¢þ
>WENV182861893
OKPI01000034
[OKPI] human gut metagenome; human gut
31204
31279
+
Thr
TGT
[ENA]
¢þ
>WENV182861894
OKPI01000034
[OKPI] human gut metagenome; human gut
32907
32982
+
Ile2
CAT
[ENA]
¢þ
>WENV182861871
OKPI01000010
[OKPI] human gut metagenome; human gut
37066
36990
-
Pro
CGG
[ENA]
¢þ
>WENV182861858
OKPI01000006
[OKPI] human gut metagenome; human gut
38488
38582
+
SeC
TCA
[ENA]
¢þ
>WENV182861890
OKPI01000031
[OKPI] human gut metagenome; human gut
45506
45431
-
Asn
GTT
[ENA]
¢þ
>WENV182861889
OKPI01000031
[OKPI] human gut metagenome; human gut
47915
47840
-
Asn
GTT
[ENA]
¢þ
>WENV182861888
OKPI01000031
[OKPI] human gut metagenome; human gut
49664
49739
+
Asn
GTT
[ENA]
¢þ
>WENV182861872
OKPI01000011
[OKPI] human gut metagenome; human gut
54637
54712
+
Gly
GCC
[ENA]
¢þ
>WENV182861873
OKPI01000011
[OKPI] human gut metagenome; human gut
54767
54840
+
Cys
GCA
[ENA]
¢þ
>WENV182861874
OKPI01000011
[OKPI] human gut metagenome; human gut
54853
54939
+
Leu
TAA
[ENA]
¢þ
>WENV182861884
OKPI01000020
[OKPI] human gut metagenome; human gut
65220
65144
-
Val
GAC
[ENA]
¢þ
>WENV182861883
OKPI01000020
[OKPI] human gut metagenome; human gut
65301
65225
-
Val
GAC
[ENA]
¢þ
>WENV182861886
OKPI01000029
[OKPI] human gut metagenome; human gut
68482
68556
+
Arg
CCT
[ENA]
¢þ
>WENV182861882
OKPI01000016
[OKPI] human gut metagenome; human gut
78044
77968
-
Pro
TGG
[ENA]
¢þ
>WENV182861881
OKPI01000016
[OKPI] human gut metagenome; human gut
78173
78087
-
Leu
CAG
[ENA]
¢þ
>WENV182861880
OKPI01000016
[OKPI] human gut metagenome; human gut
78269
78194
-
His
GTG
[ENA]
¢þ
>WENV182861879
OKPI01000016
[OKPI] human gut metagenome; human gut
78404
78328
-
Arg
CCG
[ENA]
¢þ
>WENV182861863
OKPI01000008
[OKPI] human gut metagenome; human gut
88530
88446
-
Tyr
GTA
[ENA]
¢þ
>WENV182861862
OKPI01000008
[OKPI] human gut metagenome; human gut
88648
88564
-
Tyr
GTA
[ENA]
¢þ
>WENV182861856
OKPI01000004
[OKPI] human gut metagenome; human gut
98037
97961
-
fMet
CAT
[ENA]
¢þ
>WENV182861870
OKPI01000009
[OKPI] human gut metagenome; human gut
100529
100455
-
Gln
CTG
[ENA]
¢þ
>WENV182861869
OKPI01000009
[OKPI] human gut metagenome; human gut
100641
100567
-
Gln
CTG
[ENA]
¢þ
>WENV182861868
OKPI01000009
[OKPI] human gut metagenome; human gut
100766
100690
-
Met
CAT
[ENA]
¢þ
>WENV182861867
OKPI01000009
[OKPI] human gut metagenome; human gut
100856
100782
-
Gln
TTG
[ENA]
¢þ
>WENV182861866
OKPI01000009
[OKPI] human gut metagenome; human gut
100965
100891
-
Gln
TTG
[ENA]
¢þ
>WENV182861865
OKPI01000009
[OKPI] human gut metagenome; human gut
101073
100989
-
Leu
TAG
[ENA]
¢þ
>WENV182861864
OKPI01000009
[OKPI] human gut metagenome; human gut
101160
101084
-
Met
CAT
[ENA]
¢þ
>WENV182861854
OKPI01000002
[OKPI] human gut metagenome; human gut
101563
101487
-
fMet
CAT
[ENA]
¢þ
>WENV182861855
OKPI01000004
[OKPI] human gut metagenome; human gut
101901
101815
-
Leu
GAG
[ENA]
¢þ
>WENV182861876
OKPI01000015
[OKPI] human gut metagenome; human gut
103638
103714
+
Pro
GGG
[ENA]
¢þ
>WENV182861878
OKPI01000016
[OKPI] human gut metagenome; human gut
112948
112873
-
Trp
CCA
[ENA]
¢þ
>WENV182861877
OKPI01000016
[OKPI] human gut metagenome; human gut
113033
112957
-
Asp
GTC
[ENA]
¢þ
>WENV182861848
OKPI01000001
[OKPI] human gut metagenome; human gut
118705
118792
+
Ser
GGA
[ENA]
¢þ
>WENV182861859
OKPI01000008
[OKPI] human gut metagenome; human gut
130740
130815
+
Ile2
CAT
[ENA]
¢þ
>WENV182861860
OKPI01000008
[OKPI] human gut metagenome; human gut
130823
130899
+
Arg
TCG
[ENA]
¢þ
>WENV182861861
OKPI01000008
[OKPI] human gut metagenome; human gut
130913
130989
+
Arg
TCT
[ENA]
¢þ
>WENV182861849
OKPI01000001
[OKPI] human gut metagenome; human gut
170711
170798
+
Ser
TGA
[ENA]
¢þ
>WENV182861851
OKPI01000002
[OKPI] human gut metagenome; human gut
225661
225753
+
Ser
GCT
[ENA]
¢þ
>WENV182861852
OKPI01000002
[OKPI] human gut metagenome; human gut
225757
225833
+
Arg
ACG
[ENA]
¢þ
>WENV182861853
OKPI01000002
[OKPI] human gut metagenome; human gut
225897
225973
+
Arg
ACG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK