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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKPT] human gut metagenome; human gut
HIT:
155 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182863553
OKPT01005002
[OKPT] human gut metagenome; human gut
46
119
+
Arg
CCG
[ENA]
¢þ
>WENV182863521
OKPT01001116
[OKPT] human gut metagenome; human gut
57
141
+
Leu
CAA
[ENA]
¢þ
>WENV182863566
OKPT01008949
[OKPT] human gut metagenome; human gut
59
133
+
Gln
TTG
[ENA]
¢þ
>WENV182863532
OKPT01001590
[OKPT] human gut metagenome; human gut
59
143
+
Tyr
GTA
[ENA]
¢þ
>WENV182863523
OKPT01001274
[OKPT] human gut metagenome; human gut
62
136
+
Glu
TTC
[ENA]
¢þ
>WENV182863498
OKPT01000327
[OKPT] human gut metagenome; human gut
93
169
+
Met
CAT
[ENA]
¢þ
>WENV182863488
OKPT01000080
[OKPT] human gut metagenome; human gut
103
177
+
Gln
CTG
[ENA]
¢þ
>WENV182863459
OKPT01000036
[OKPT] human gut metagenome; human gut
107
182
+
Trp
CCA
[ENA]
¢þ
>WENV182863543
OKPT01002147
[OKPT] human gut metagenome; human gut
126
36
-
Ser
GCT
[ENA]
¢þ
>WENV182863567
OKPT01008949
[OKPT] human gut metagenome; human gut
138
213
+
Lys
TTT
[ENA]
¢þ
>WENV182863524
OKPT01001274
[OKPT] human gut metagenome; human gut
144
219
+
Val
TAC
[ENA]
¢þ
>WENV182863514
OKPT01000787
[OKPT] human gut metagenome; human gut
180
255
+
Val
TAC
[ENA]
¢þ
>WENV182863548
OKPT01003897
[OKPT] human gut metagenome; human gut
184
258
+
Trp
CCA
[ENA]
¢þ
>WENV182863499
OKPT01000327
[OKPT] human gut metagenome; human gut
206
282
+
Ile2
CAT
[ENA]
¢þ
>WENV182863568
OKPT01008949
[OKPT] human gut metagenome; human gut
222
305
+
Leu
TAG
[ENA]
¢þ
>WENV182863550
OKPT01004444
[OKPT] human gut metagenome; human gut
225
301
+
Ile2
CAT
[ENA]
¢þ
>WENV182863525
OKPT01001274
[OKPT] human gut metagenome; human gut
227
303
+
Asp
GTC
[ENA]
¢þ
>WENV182863542
OKPT01002147
[OKPT] human gut metagenome; human gut
240
150
-
Ser
TGA
[ENA]
¢þ
>WENV182863489
OKPT01000080
[OKPT] human gut metagenome; human gut
253
327
+
Gln
CTG
[ENA]
¢þ
>WENV182863554
OKPT01005160
[OKPT] human gut metagenome; human gut
254
344
+
Ser
GGA
[ENA]
¢þ
>WENV182863515
OKPT01000787
[OKPT] human gut metagenome; human gut
271
346
+
Thr
TGT
[ENA]
¢þ
>WENV182863500
OKPT01000327
[OKPT] human gut metagenome; human gut
295
387
+
Ser
TGA
[ENA]
¢þ
>WENV182863551
OKPT01004444
[OKPT] human gut metagenome; human gut
307
382
+
Ala
TGC
[ENA]
¢þ
>WENV182863561
OKPT01007317
[OKPT] human gut metagenome; human gut
325
400
+
Asn
GTT
[ENA]
¢þ
>WENV182863519
OKPT01000956
[OKPT] human gut metagenome; human gut
328
254
-
Glu
CTC
[ENA]
¢þ
>WENV182863569
OKPT01008949
[OKPT] human gut metagenome; human gut
333
407
+
Gly
GCC
[ENA]
¢þ
>WENV182863571
OKPT01009568
[OKPT] human gut metagenome; human gut
336
247
-
Ser
CGA
[ENA]
¢þ
>WENV182863526
OKPT01001274
[OKPT] human gut metagenome; human gut
336
410
+
Thr
TGT
[ENA]
¢þ
>WENV182863516
OKPT01000787
[OKPT] human gut metagenome; human gut
351
433
+
Tyr
GTA
[ENA]
¢þ
>WENV182863552
OKPT01004444
[OKPT] human gut metagenome; human gut
388
464
+
Ile
GAT
[ENA]
¢þ
>WENV182863565
OKPT01007871
[OKPT] human gut metagenome; human gut
389
305
-
Leu
CAG
[ENA]
¢þ
>WENV182863562
OKPT01007317
[OKPT] human gut metagenome; human gut
405
479
+
Glu
TTC
[ENA]
¢þ
>WENV182863572
OKPT01009766
[OKPT] human gut metagenome; human gut
414
339
-
Ile2
CAT
[ENA]
¢þ
>WENV182863570
OKPT01008949
[OKPT] human gut metagenome; human gut
414
487
+
Gly
TCC
[ENA]
¢þ
>WENV182863527
OKPT01001274
[OKPT] human gut metagenome; human gut
417
491
+
Glu
TTC
[ENA]
¢þ
>WENV182863517
OKPT01000787
[OKPT] human gut metagenome; human gut
439
514
+
Gln
TTG
[ENA]
¢þ
>WENV182863533
OKPT01001620
[OKPT] human gut metagenome; human gut
448
523
+
Phe
GAA
[ENA]
¢þ
>WENV182863563
OKPT01007317
[OKPT] human gut metagenome; human gut
483
558
+
Val
TAC
[ENA]
¢þ
>WENV182863559
OKPT01006863
[OKPT] human gut metagenome; human gut
496
569
+
His
GTG
[ENA]
¢þ
>WENV182863528
OKPT01001274
[OKPT] human gut metagenome; human gut
499
574
+
Val
TAC
[ENA]
¢þ
>WENV182863501
OKPT01000327
[OKPT] human gut metagenome; human gut
510
586
+
Asp
GTC
[ENA]
¢þ
>WENV182863518
OKPT01000787
[OKPT] human gut metagenome; human gut
523
598
+
Lys
TTT
[ENA]
¢þ
>WENV182863534
OKPT01001620
[OKPT] human gut metagenome; human gut
529
602
+
Cys
GCA
[ENA]
¢þ
>WENV182863558
OKPT01005632
[OKPT] human gut metagenome; human gut
548
623
+
Glu
TTC
[ENA]
¢þ
>WENV182863564
OKPT01007317
[OKPT] human gut metagenome; human gut
562
636
+
Gly
GCC
[ENA]
¢þ
>WENV182863549
OKPT01004068
[OKPT] human gut metagenome; human gut
565
638
+
Thr
TGT
[ENA]
¢þ
>WENV182863529
OKPT01001274
[OKPT] human gut metagenome; human gut
582
658
+
Asp
GTC
[ENA]
¢þ
>WENV182863560
OKPT01006863
[OKPT] human gut metagenome; human gut
583
657
+
Gln
TTG
[ENA]
¢þ
>WENV182863502
OKPT01000327
[OKPT] human gut metagenome; human gut
589
664
+
Phe
GAA
[ENA]
¢þ
>WENV182863544
OKPT01002216
[OKPT] human gut metagenome; human gut
647
721
+
Arg
CCT
[ENA]
¢þ
>WENV182863531
OKPT01001588
[OKPT] human gut metagenome; human gut
660
735
+
fMet
CAT
[ENA]
¢þ
>WENV182863555
OKPT01005543
[OKPT] human gut metagenome; human gut
660
746
+
Leu
GAG
[ENA]
¢þ
>WENV182863547
OKPT01003038
[OKPT] human gut metagenome; human gut
686
612
-
Arg
CCG
[ENA]
¢þ
>WENV182863545
OKPT01002787
[OKPT] human gut metagenome; human gut
744
669
-
Thr
GGT
[ENA]
¢þ
>WENV182863556
OKPT01005543
[OKPT] human gut metagenome; human gut
749
822
+
Thr
GGT
[ENA]
¢þ
>WENV182863503
OKPT01000327
[OKPT] human gut metagenome; human gut
795
871
+
Arg
ACG
[ENA]
¢þ
>WENV182863557
OKPT01005621
[OKPT] human gut metagenome; human gut
835
760
-
Arg
CCT
[ENA]
¢þ
>WENV182863511
OKPT01000628
[OKPT] human gut metagenome; human gut
858
947
+
Ser
GGA
[ENA]
¢þ
>WENV182863541
OKPT01001879
[OKPT] human gut metagenome; human gut
872
946
+
Cys
GCA
[ENA]
¢þ
>WENV182863508
OKPT01000442
[OKPT] human gut metagenome; human gut
876
951
+
Thr
GGT
[ENA]
¢þ
>WENV182863504
OKPT01000327
[OKPT] human gut metagenome; human gut
895
971
+
Pro
TGG
[ENA]
¢þ
>WENV182863497
OKPT01000184
[OKPT] human gut metagenome; human gut
933
858
-
Thr
TGT
[ENA]
¢þ
>WENV182863505
OKPT01000327
[OKPT] human gut metagenome; human gut
987
1062
+
Ala
TGC
[ENA]
¢þ
>WENV182863540
OKPT01001867
[OKPT] human gut metagenome; human gut
1299
1386
+
Ser
TGA
[ENA]
¢þ
>WENV182863546
OKPT01002804
[OKPT] human gut metagenome; human gut
1331
1406
+
Pro
TGG
[ENA]
¢þ
>WENV182863539
OKPT01001728
[OKPT] human gut metagenome; human gut
1342
1266
-
Arg
TCG
[ENA]
¢þ
>WENV182863538
OKPT01001728
[OKPT] human gut metagenome; human gut
1466
1393
-
Gly
TCC
[ENA]
¢þ
>WENV182863513
OKPT01000786
[OKPT] human gut metagenome; human gut
1494
1570
+
Arg
TCT
[ENA]
¢þ
>WENV182863537
OKPT01001728
[OKPT] human gut metagenome; human gut
1544
1470
-
Gly
GCC
[ENA]
¢þ
>WENV182863536
OKPT01001728
[OKPT] human gut metagenome; human gut
1651
1568
-
Leu
TAG
[ENA]
¢þ
>WENV182863535
OKPT01001728
[OKPT] human gut metagenome; human gut
1737
1662
-
Lys
TTT
[ENA]
¢þ
>WENV182863509
OKPT01000490
[OKPT] human gut metagenome; human gut
1773
1858
+
Asp
GTC
[ENA]
¢þ
>WENV182863491
OKPT01000101
[OKPT] human gut metagenome; human gut
1833
1758
-
Thr
CGT
[ENA]
¢þ
>WENV182863520
OKPT01001025
[OKPT] human gut metagenome; human gut
1948
1874
-
Arg
CCT
[ENA]
¢þ
>WENV182863421
OKPT01000002
[OKPT] human gut metagenome; human gut
2334
2260
-
Arg
CCT
[ENA]
¢þ
>WENV182863522
OKPT01001267
[OKPT] human gut metagenome; human gut
2419
2344
-
Glu
TTC
[ENA]
¢þ
>WENV182863507
OKPT01000336
[OKPT] human gut metagenome; human gut
2489
2416
-
Gly
TCC
[ENA]
¢þ
>WENV182863530
OKPT01001284
[OKPT] human gut metagenome; human gut
2589
2663
+
Arg
CCT
[ENA]
¢þ
>WENV182863512
OKPT01000711
[OKPT] human gut metagenome; human gut
4112
4029
-
Leu
TAG
[ENA]
¢þ
>WENV182863458
OKPT01000034
[OKPT] human gut metagenome; human gut
4568
4643
+
Ile2
CAT
[ENA]
¢þ
>WENV182863506
OKPT01000336
[OKPT] human gut metagenome; human gut
5164
5091
-
Gly
TCC
[ENA]
¢þ
>WENV182863510
OKPT01000496
[OKPT] human gut metagenome; human gut
5194
5119
-
Glu
CTC
[ENA]
¢þ
>WENV182863496
OKPT01000161
[OKPT] human gut metagenome; human gut
5679
5604
-
Thr
GGT
[ENA]
¢þ
>WENV182863480
OKPT01000067
[OKPT] human gut metagenome; human gut
6745
6820
+
Thr
CGT
[ENA]
¢þ
>WENV182863468
OKPT01000051
[OKPT] human gut metagenome; human gut
8317
8241
-
Pro
CGG
[ENA]
¢þ
>WENV182863478
OKPT01000064
[OKPT] human gut metagenome; human gut
8348
8435
+
Ser
TGA
[ENA]
¢þ
>WENV182863495
OKPT01000113
[OKPT] human gut metagenome; human gut
9589
9513
-
fMet
CAT
[ENA]
¢þ
>WENV182863476
OKPT01000058
[OKPT] human gut metagenome; human gut
10038
9962
-
fMet
CAT
[ENA]
¢þ
>WENV182863494
OKPT01000113
[OKPT] human gut metagenome; human gut
13456
13370
-
Leu
GAG
[ENA]
¢þ
>WENV182863475
OKPT01000058
[OKPT] human gut metagenome; human gut
14054
13968
-
Leu
GAG
[ENA]
¢þ
>WENV182863493
OKPT01000108
[OKPT] human gut metagenome; human gut
18543
18467
-
Asp
GTC
[ENA]
¢þ
>WENV182863455
OKPT01000028
[OKPT] human gut metagenome; human gut
21143
21219
+
Pro
CGG
[ENA]
¢þ
>WENV182863492
OKPT01000104
[OKPT] human gut metagenome; human gut
22632
22556
-
Asp
GTC
[ENA]
¢þ
>WENV182863474
OKPT01000057
[OKPT] human gut metagenome; human gut
22677
22601
-
Val
GAC
[ENA]
¢þ
>WENV182863473
OKPT01000057
[OKPT] human gut metagenome; human gut
22758
22682
-
Val
GAC
[ENA]
¢þ
>WENV182863472
OKPT01000057
[OKPT] human gut metagenome; human gut
22839
22763
-
Val
GAC
[ENA]
¢þ
>WENV182863442
OKPT01000015
[OKPT] human gut metagenome; human gut
25306
25230
-
Arg
TCT
[ENA]
¢þ
>WENV182863441
OKPT01000015
[OKPT] human gut metagenome; human gut
25386
25312
-
Asn
GTT
[ENA]
¢þ
>WENV182863449
OKPT01000020
[OKPT] human gut metagenome; human gut
25484
25409
-
Ile2
CAT
[ENA]
¢þ
>WENV182863490
OKPT01000085
[OKPT] human gut metagenome; human gut
30440
30534
+
SeC
TCA
[ENA]
¢þ
>WENV182863479
OKPT01000066
[OKPT] human gut metagenome; human gut
33259
33186
-
Gly
CCC
[ENA]
¢þ
>WENV182863477
OKPT01000061
[OKPT] human gut metagenome; human gut
33283
33357
+
Arg
CCT
[ENA]
¢þ
>WENV182863467
OKPT01000047
[OKPT] human gut metagenome; human gut
34681
34605
-
Arg
TCT
[ENA]
¢þ
>WENV182863464
OKPT01000037
[OKPT] human gut metagenome; human gut
37886
37792
-
SeC
TCA
[ENA]
¢þ
>WENV182863460
OKPT01000036
[OKPT] human gut metagenome; human gut
38214
38290
+
Arg
CCG
[ENA]
¢þ
>WENV182863461
OKPT01000036
[OKPT] human gut metagenome; human gut
38345
38420
+
His
GTG
[ENA]
¢þ
>WENV182863462
OKPT01000036
[OKPT] human gut metagenome; human gut
38444
38530
+
Leu
CAG
[ENA]
¢þ
>WENV182863463
OKPT01000036
[OKPT] human gut metagenome; human gut
38573
38649
+
Pro
TGG
[ENA]
¢þ
>WENV182863484
OKPT01000075
[OKPT] human gut metagenome; human gut
39875
39951
+
Arg
CCG
[ENA]
¢þ
>WENV182863485
OKPT01000075
[OKPT] human gut metagenome; human gut
40006
40081
+
His
GTG
[ENA]
¢þ
>WENV182863486
OKPT01000075
[OKPT] human gut metagenome; human gut
40102
40188
+
Leu
CAG
[ENA]
¢þ
>WENV182863487
OKPT01000075
[OKPT] human gut metagenome; human gut
40231
40307
+
Pro
TGG
[ENA]
¢þ
>WENV182863481
OKPT01000070
[OKPT] human gut metagenome; human gut
45823
45898
+
Ile2
CAT
[ENA]
¢þ
>WENV182863482
OKPT01000070
[OKPT] human gut metagenome; human gut
45979
46054
+
Thr
TGT
[ENA]
¢þ
>WENV182863483
OKPT01000070
[OKPT] human gut metagenome; human gut
46058
46132
+
Gly
TCC
[ENA]
¢þ
>WENV182863471
OKPT01000054
[OKPT] human gut metagenome; human gut
57571
57496
-
Ala
GGC
[ENA]
¢þ
>WENV182863470
OKPT01000054
[OKPT] human gut metagenome; human gut
57686
57611
-
Ala
GGC
[ENA]
¢þ
>WENV182863469
OKPT01000054
[OKPT] human gut metagenome; human gut
60385
60460
+
Val
TAC
[ENA]
¢þ
>WENV182863444
OKPT01000016
[OKPT] human gut metagenome; human gut
61202
61115
-
Ser
TGA
[ENA]
¢þ
>WENV182863457
OKPT01000029
[OKPT] human gut metagenome; human gut
73147
73058
-
Ser
CGA
[ENA]
¢þ
>WENV182863456
OKPT01000029
[OKPT] human gut metagenome; human gut
74139
74214
+
Asn
GTT
[ENA]
¢þ
>WENV182863466
OKPT01000040
[OKPT] human gut metagenome; human gut
74924
74840
-
Tyr
GTA
[ENA]
¢þ
>WENV182863465
OKPT01000040
[OKPT] human gut metagenome; human gut
75225
75141
-
Tyr
GTA
[ENA]
¢þ
>WENV182863432
OKPT01000014
[OKPT] human gut metagenome; human gut
82268
82352
+
Leu
CAA
[ENA]
¢þ
>WENV182863454
OKPT01000026
[OKPT] human gut metagenome; human gut
84653
84577
-
Val
GAC
[ENA]
¢þ
>WENV182863453
OKPT01000026
[OKPT] human gut metagenome; human gut
84734
84658
-
Val
GAC
[ENA]
¢þ
>WENV182863440
OKPT01000015
[OKPT] human gut metagenome; human gut
92121
92035
-
Leu
TAA
[ENA]
¢þ
>WENV182863439
OKPT01000015
[OKPT] human gut metagenome; human gut
92208
92135
-
Cys
GCA
[ENA]
¢þ
>WENV182863438
OKPT01000015
[OKPT] human gut metagenome; human gut
92324
92249
-
Gly
GCC
[ENA]
¢þ
>WENV182863448
OKPT01000020
[OKPT] human gut metagenome; human gut
95132
95057
-
Phe
GAA
[ENA]
¢þ
>WENV182863443
OKPT01000016
[OKPT] human gut metagenome; human gut
113205
113118
-
Ser
GGA
[ENA]
¢þ
>WENV182863437
OKPT01000015
[OKPT] human gut metagenome; human gut
113519
113430
-
Ser
CGA
[ENA]
¢þ
>WENV182863433
OKPT01000015
[OKPT] human gut metagenome; human gut
114511
114586
+
Asn
GTT
[ENA]
¢þ
>WENV182863452
OKPT01000025
[OKPT] human gut metagenome; human gut
114831
114756
-
Asn
GTT
[ENA]
¢þ
>WENV182863451
OKPT01000025
[OKPT] human gut metagenome; human gut
117240
117165
-
Asn
GTT
[ENA]
¢þ
>WENV182863450
OKPT01000025
[OKPT] human gut metagenome; human gut
118989
119064
+
Asn
GTT
[ENA]
¢þ
>WENV182863434
OKPT01000015
[OKPT] human gut metagenome; human gut
119752
119827
+
Asn
GTT
[ENA]
¢þ
>WENV182863436
OKPT01000015
[OKPT] human gut metagenome; human gut
128749
128674
-
Asn
GTT
[ENA]
¢þ
>WENV182863435
OKPT01000015
[OKPT] human gut metagenome; human gut
130507
130582
+
Asn
GTT
[ENA]
¢þ
>WENV182863427
OKPT01000006
[OKPT] human gut metagenome; human gut
132713
132797
+
Tyr
GTA
[ENA]
¢þ
>WENV182863428
OKPT01000006
[OKPT] human gut metagenome; human gut
132831
132915
+
Tyr
GTA
[ENA]
¢þ
>WENV182863424
OKPT01000005
[OKPT] human gut metagenome; human gut
136983
137059
+
fMet
CAT
[ENA]
¢þ
>WENV182863425
OKPT01000005
[OKPT] human gut metagenome; human gut
137093
137169
+
fMet
CAT
[ENA]
¢þ
>WENV182863426
OKPT01000005
[OKPT] human gut metagenome; human gut
137203
137279
+
fMet
CAT
[ENA]
¢þ
>WENV182863431
OKPT01000013
[OKPT] human gut metagenome; human gut
141727
141652
-
Phe
GAA
[ENA]
¢þ
>WENV182863419
OKPT01000001
[OKPT] human gut metagenome; human gut
150574
150499
-
Phe
GAA
[ENA]
¢þ
>WENV182863445
OKPT01000017
[OKPT] human gut metagenome; human gut
152154
152246
+
Ser
GCT
[ENA]
¢þ
>WENV182863430
OKPT01000011
[OKPT] human gut metagenome; human gut
152241
152154
-
Ser
GGA
[ENA]
¢þ
>WENV182863446
OKPT01000017
[OKPT] human gut metagenome; human gut
152251
152327
+
Arg
ACG
[ENA]
¢þ
>WENV182863447
OKPT01000017
[OKPT] human gut metagenome; human gut
152478
152554
+
Arg
ACG
[ENA]
¢þ
>WENV182863422
OKPT01000003
[OKPT] human gut metagenome; human gut
168385
168461
+
Pro
GGG
[ENA]
¢þ
>WENV182863420
OKPT01000002
[OKPT] human gut metagenome; human gut
173524
173448
-
Pro
GGG
[ENA]
¢þ
>WENV182863423
OKPT01000004
[OKPT] human gut metagenome; human gut
174085
174161
+
Arg
TCT
[ENA]
¢þ
>WENV182863429
OKPT01000008
[OKPT] human gut metagenome; human gut
189290
189215
-
Phe
GAA
[ENA]
¢þ
>WENV182863418
OKPT01000001
[OKPT] human gut metagenome; human gut
261406
261479
+
Gly
CCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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