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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OKPV] human gut metagenome; human gut
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182863821
OKPV01000435
[OKPV] human gut metagenome; human gut
2
88
+
Leu
CAG
[ENA]
¢þ
>WENV182863799
OKPV01000230
[OKPV] human gut metagenome; human gut
88
172
+
Tyr
GTA
[ENA]
¢þ
>WENV182863806
OKPV01000326
[OKPV] human gut metagenome; human gut
99
25
-
Gln
TTG
[ENA]
¢þ
>WENV182863819
OKPV01000403
[OKPV] human gut metagenome; human gut
101
177
+
Pro
TGG
[ENA]
¢þ
>WENV182863785
OKPV01000082
[OKPV] human gut metagenome; human gut
124
37
-
Ser
GGA
[ENA]
¢þ
>WENV182863818
OKPV01000388
[OKPV] human gut metagenome; human gut
157
82
-
Lys
TTT
[ENA]
¢þ
>WENV182863778
OKPV01000023
[OKPV] human gut metagenome; human gut
180
104
-
Arg
ACG
[ENA]
¢þ
>WENV182863805
OKPV01000326
[OKPV] human gut metagenome; human gut
208
134
-
Gln
TTG
[ENA]
¢þ
>WENV182863777
OKPV01000023
[OKPV] human gut metagenome; human gut
277
185
-
Ser
GCT
[ENA]
¢þ
>WENV182863804
OKPV01000326
[OKPV] human gut metagenome; human gut
328
244
-
Leu
TAG
[ENA]
¢þ
>WENV182863796
OKPV01000188
[OKPV] human gut metagenome; human gut
355
279
-
Val
GAC
[ENA]
¢þ
>WENV182863803
OKPV01000326
[OKPV] human gut metagenome; human gut
413
337
-
Met
CAT
[ENA]
¢þ
>WENV182863795
OKPV01000188
[OKPV] human gut metagenome; human gut
436
360
-
Val
GAC
[ENA]
¢þ
>WENV182863817
OKPV01000348
[OKPV] human gut metagenome; human gut
442
367
-
Thr
GGT
[ENA]
¢þ
>WENV182863816
OKPV01000348
[OKPV] human gut metagenome; human gut
522
448
-
Gly
TCC
[ENA]
¢þ
>WENV182863815
OKPV01000348
[OKPV] human gut metagenome; human gut
726
642
-
Tyr
GTA
[ENA]
¢þ
>WENV182863823
OKPV01000532
[OKPV] human gut metagenome; human gut
791
716
-
Thr
GGT
[ENA]
¢þ
>WENV182863814
OKPV01000348
[OKPV] human gut metagenome; human gut
812
737
-
Thr
TGT
[ENA]
¢þ
>WENV182863820
OKPV01000405
[OKPV] human gut metagenome; human gut
1142
1067
-
Asn
GTT
[ENA]
¢þ
>WENV182863822
OKPV01000505
[OKPV] human gut metagenome; human gut
1161
1086
-
Lys
TTT
[ENA]
¢þ
>WENV182863810
OKPV01000342
[OKPV] human gut metagenome; human gut
1211
1284
+
Gly
CCC
[ENA]
¢þ
>WENV182863813
OKPV01000346
[OKPV] human gut metagenome; human gut
1379
1304
-
Ala
GGC
[ENA]
¢þ
>WENV182863812
OKPV01000346
[OKPV] human gut metagenome; human gut
1496
1421
-
Ala
GGC
[ENA]
¢þ
>WENV182863787
OKPV01000100
[OKPV] human gut metagenome; human gut
2063
1979
-
Leu
CAA
[ENA]
¢þ
>WENV182863786
OKPV01000096
[OKPV] human gut metagenome; human gut
2925
2850
-
Phe
GAA
[ENA]
¢þ
>WENV182863801
OKPV01000266
[OKPV] human gut metagenome; human gut
3122
3028
-
SeC
TCA
[ENA]
¢þ
>WENV182863809
OKPV01000328
[OKPV] human gut metagenome; human gut
3466
3380
-
Leu
TAA
[ENA]
¢þ
>WENV182863808
OKPV01000328
[OKPV] human gut metagenome; human gut
3553
3480
-
Cys
GCA
[ENA]
¢þ
>WENV182863807
OKPV01000328
[OKPV] human gut metagenome; human gut
3667
3592
-
Gly
GCC
[ENA]
¢þ
>WENV182863811
OKPV01000346
[OKPV] human gut metagenome; human gut
4205
4280
+
Val
TAC
[ENA]
¢þ
>WENV182863802
OKPV01000311
[OKPV] human gut metagenome; human gut
4318
4243
-
Asn
GTT
[ENA]
¢þ
>WENV182863800
OKPV01000248
[OKPV] human gut metagenome; human gut
6694
6618
-
Pro
CGG
[ENA]
¢þ
>WENV182863798
OKPV01000214
[OKPV] human gut metagenome; human gut
9402
9489
+
Ser
TGA
[ENA]
¢þ
>WENV182863797
OKPV01000197
[OKPV] human gut metagenome; human gut
9824
9900
+
Arg
TCT
[ENA]
¢þ
>WENV182863782
OKPV01000046
[OKPV] human gut metagenome; human gut
10237
10323
+
Leu
GAG
[ENA]
¢þ
>WENV182863783
OKPV01000046
[OKPV] human gut metagenome; human gut
12128
12204
+
fMet
CAT
[ENA]
¢þ
>WENV182863794
OKPV01000160
[OKPV] human gut metagenome; human gut
12539
12465
-
Gln
CTG
[ENA]
¢þ
>WENV182863793
OKPV01000160
[OKPV] human gut metagenome; human gut
12711
12637
-
Gln
CTG
[ENA]
¢þ
>WENV182863788
OKPV01000128
[OKPV] human gut metagenome; human gut
12744
12668
-
Pro
GGG
[ENA]
¢þ
>WENV182863792
OKPV01000160
[OKPV] human gut metagenome; human gut
12833
12757
-
Met
CAT
[ENA]
¢þ
>WENV182863789
OKPV01000153
[OKPV] human gut metagenome; human gut
12878
12949
+
Arg
CCT
[ENA]
¢þ
>WENV182863791
OKPV01000156
[OKPV] human gut metagenome; human gut
13036
12961
-
Trp
CCA
[ENA]
¢þ
>WENV182863790
OKPV01000156
[OKPV] human gut metagenome; human gut
13167
13091
-
Asp
GTC
[ENA]
¢þ
>WENV182863780
OKPV01000036
[OKPV] human gut metagenome; human gut
15831
15906
+
Gly
GCC
[ENA]
¢þ
>WENV182863781
OKPV01000036
[OKPV] human gut metagenome; human gut
15931
16006
+
Gly
GCC
[ENA]
¢þ
>WENV182863784
OKPV01000063
[OKPV] human gut metagenome; human gut
21262
21337
+
Thr
CGT
[ENA]
¢þ
>WENV182863779
OKPV01000034
[OKPV] human gut metagenome; human gut
28247
28323
+
Arg
CCG
[ENA]
¢þ
>WENV182863776
OKPV01000011
[OKPV] human gut metagenome; human gut
32325
32400
+
Ile2
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK