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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OKPZ] human gut metagenome; human gut
HIT:
72 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182864114
OKPZ01000067
[OKPZ] human gut metagenome; human gut
68
141
+
Arg
ACG
[ENA]
¢þ
>WENV182864173
OKPZ01001339
[OKPZ] human gut metagenome; human gut
180
108
-
Gln
CTG
[ENA]
¢þ
>WENV182864115
OKPZ01000067
[OKPZ] human gut metagenome; human gut
231
304
+
Pro
TGG
[ENA]
¢þ
>WENV182864162
OKPZ01000831
[OKPZ] human gut metagenome; human gut
358
273
-
Leu
CAG
[ENA]
¢þ
>WENV182864163
OKPZ01000842
[OKPZ] human gut metagenome; human gut
478
553
+
Arg
CCT
[ENA]
¢þ
>WENV182864159
OKPZ01000823
[OKPZ] human gut metagenome; human gut
512
587
+
Phe
GAA
[ENA]
¢þ
>WENV182864123
OKPZ01000161
[OKPZ] human gut metagenome; human gut
577
652
+
Val
TAC
[ENA]
¢þ
>WENV182864160
OKPZ01000823
[OKPZ] human gut metagenome; human gut
593
663
+
Cys
GCA
[ENA]
¢þ
>WENV182864124
OKPZ01000161
[OKPZ] human gut metagenome; human gut
659
734
+
Thr
TGT
[ENA]
¢þ
>WENV182864175
OKPZ01002215
[OKPZ] human gut metagenome; human gut
660
570
-
Ser
GCT
[ENA]
¢þ
>WENV182864161
OKPZ01000823
[OKPZ] human gut metagenome; human gut
683
768
+
Leu
CAA
[ENA]
¢þ
>WENV182864174
OKPZ01002215
[OKPZ] human gut metagenome; human gut
737
663
-
Asn
GTT
[ENA]
¢þ
>WENV182864125
OKPZ01000161
[OKPZ] human gut metagenome; human gut
740
814
+
Lys
TTT
[ENA]
¢þ
>WENV182864157
OKPZ01000580
[OKPZ] human gut metagenome; human gut
743
659
-
Leu
GAG
[ENA]
¢þ
>WENV182864126
OKPZ01000161
[OKPZ] human gut metagenome; human gut
832
906
+
Gly
GCC
[ENA]
¢þ
>WENV182864127
OKPZ01000161
[OKPZ] human gut metagenome; human gut
918
1006
+
Leu
TAA
[ENA]
¢þ
>WENV182864128
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1019
1093
+
Arg
ACG
[ENA]
¢þ
>WENV182864155
OKPZ01000395
[OKPZ] human gut metagenome; human gut
1069
1143
+
Lys
CTT
[ENA]
¢þ
>WENV182864129
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1102
1175
+
Pro
TGG
[ENA]
¢þ
>WENV182864171
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1121
1046
-
Lys
CTT
[ENA]
¢þ
>WENV182864130
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1192
1264
+
Ala
TGC
[ENA]
¢þ
>WENV182864170
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1203
1127
-
Arg
TCT
[ENA]
¢þ
>WENV182864169
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1287
1214
-
Gly
TCC
[ENA]
¢þ
>WENV182864131
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1287
1362
+
Met
CAT
[ENA]
¢þ
>WENV182864168
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1368
1294
-
Gly
GCC
[ENA]
¢þ
>WENV182864132
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1381
1456
+
Ile2
CAT
[ENA]
¢þ
>WENV182864167
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1455
1372
-
Leu
TAG
[ENA]
¢þ
>WENV182864133
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1489
1578
+
Ser
TGA
[ENA]
¢þ
>WENV182864166
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1535
1460
-
Lys
TTT
[ENA]
¢þ
>WENV182864134
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1611
1686
+
fMet
CAT
[ENA]
¢þ
>WENV182864165
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1613
1539
-
Gln
TTG
[ENA]
¢þ
>WENV182864172
OKPZ01001126
[OKPZ] human gut metagenome; human gut
1636
1564
-
Thr
GGT
[ENA]
¢þ
>WENV182864164
OKPZ01001028
[OKPZ] human gut metagenome; human gut
1694
1619
-
His
GTG
[ENA]
¢þ
>WENV182864135
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1734
1810
+
Asp
GTC
[ENA]
¢þ
>WENV182864136
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1812
1882
+
Gly
TCC
[ENA]
¢þ
>WENV182864137
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1894
1969
+
Ile
GAT
[ENA]
¢þ
>WENV182864138
OKPZ01000161
[OKPZ] human gut metagenome; human gut
1982
2055
+
Glu
TTC
[ENA]
¢þ
>WENV182864158
OKPZ01000658
[OKPZ] human gut metagenome; human gut
2308
2382
+
Asn
GTT
[ENA]
¢þ
>WENV182864156
OKPZ01000442
[OKPZ] human gut metagenome; human gut
2990
2903
-
Ser
CGA
[ENA]
¢þ
>WENV182864118
OKPZ01000098
[OKPZ] human gut metagenome; human gut
3405
3332
-
Lys
CTT
[ENA]
¢þ
>WENV182864149
OKPZ01000340
[OKPZ] human gut metagenome; human gut
4493
4585
+
Ser
TGA
[ENA]
¢þ
>WENV182864150
OKPZ01000340
[OKPZ] human gut metagenome; human gut
4597
4670
+
fMet
CAT
[ENA]
¢þ
>WENV182864151
OKPZ01000340
[OKPZ] human gut metagenome; human gut
4685
4760
+
Asp
GTC
[ENA]
¢þ
>WENV182864152
OKPZ01000340
[OKPZ] human gut metagenome; human gut
4770
4844
+
Phe
GAA
[ENA]
¢þ
>WENV182864147
OKPZ01000270
[OKPZ] human gut metagenome; human gut
4795
4721
-
Arg
TCT
[ENA]
¢þ
>WENV182864153
OKPZ01000340
[OKPZ] human gut metagenome; human gut
4857
4932
+
His
GTG
[ENA]
¢þ
>WENV182864154
OKPZ01000340
[OKPZ] human gut metagenome; human gut
4950
5023
+
Gly
TCC
[ENA]
¢þ
>WENV182864148
OKPZ01000332
[OKPZ] human gut metagenome; human gut
5020
4949
-
Arg
CCG
[ENA]
¢þ
>WENV182864146
OKPZ01000247
[OKPZ] human gut metagenome; human gut
7326
7412
+
Leu
GAG
[ENA]
¢þ
>WENV182864121
OKPZ01000119
[OKPZ] human gut metagenome; human gut
7377
7306
-
Glu
TTC
[ENA]
¢þ
>WENV182864122
OKPZ01000130
[OKPZ] human gut metagenome; human gut
7833
7760
-
Arg
CCG
[ENA]
¢þ
>WENV182864113
OKPZ01000042
[OKPZ] human gut metagenome; human gut
7956
8031
+
Arg
CCT
[ENA]
¢þ
>WENV182864145
OKPZ01000206
[OKPZ] human gut metagenome; human gut
8761
8685
-
Arg
ACG
[ENA]
¢þ
>WENV182864144
OKPZ01000206
[OKPZ] human gut metagenome; human gut
8856
8771
-
Leu
TAA
[ENA]
¢þ
>WENV182864143
OKPZ01000206
[OKPZ] human gut metagenome; human gut
8943
8872
-
Gly
GCC
[ENA]
¢þ
>WENV182864142
OKPZ01000206
[OKPZ] human gut metagenome; human gut
9023
8948
-
Thr
TGT
[ENA]
¢þ
>WENV182864141
OKPZ01000206
[OKPZ] human gut metagenome; human gut
9123
9040
-
Leu
TAG
[ENA]
¢þ
>WENV182864140
OKPZ01000206
[OKPZ] human gut metagenome; human gut
9203
9129
-
Lys
TTT
[ENA]
¢þ
>WENV182864139
OKPZ01000206
[OKPZ] human gut metagenome; human gut
9282
9208
-
Val
TAC
[ENA]
¢þ
>WENV182864112
OKPZ01000036
[OKPZ] human gut metagenome; human gut
12057
12127
+
Gly
CCC
[ENA]
¢þ
>WENV182864119
OKPZ01000099
[OKPZ] human gut metagenome; human gut
12186
12261
+
Thr
GGT
[ENA]
¢þ
>WENV182864110
OKPZ01000012
[OKPZ] human gut metagenome; human gut
12325
12236
-
Ser
CGA
[ENA]
¢þ
>WENV182864108
OKPZ01000007
[OKPZ] human gut metagenome; human gut
14827
14754
-
Arg
CCG
[ENA]
¢þ
>WENV182864116
OKPZ01000094
[OKPZ] human gut metagenome; human gut
16048
16123
+
Arg
TCT
[ENA]
¢þ
>WENV182864120
OKPZ01000114
[OKPZ] human gut metagenome; human gut
16555
16627
+
Thr
CGT
[ENA]
¢þ
>WENV182864117
OKPZ01000097
[OKPZ] human gut metagenome; human gut
18765
18837
+
Thr
CGT
[ENA]
¢þ
>WENV182864104
OKPZ01000002
[OKPZ] human gut metagenome; human gut
20838
20918
+
Tyr
GTA
[ENA]
¢þ
>WENV182864105
OKPZ01000002
[OKPZ] human gut metagenome; human gut
20925
20998
+
Trp
CCA
[ENA]
¢þ
>WENV182864106
OKPZ01000002
[OKPZ] human gut metagenome; human gut
21001
21074
+
His
GTG
[ENA]
¢þ
>WENV182864107
OKPZ01000002
[OKPZ] human gut metagenome; human gut
21084
21157
+
Gln
TTG
[ENA]
¢þ
>WENV182864111
OKPZ01000020
[OKPZ] human gut metagenome; human gut
23578
23506
-
Thr
GGT
[ENA]
¢þ
>WENV182864109
OKPZ01000012
[OKPZ] human gut metagenome; human gut
43940
43865
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK