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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OKQA] human gut metagenome; human gut
HIT:
46 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182864192
OKQA01000467
[OKQA] human gut metagenome; human gut
53
124
+
Gly
GCC
[ENA]
¢þ
>WENV182864214
OKQA01002559
[OKQA] human gut metagenome; human gut
69
144
+
Thr
TGT
[ENA]
¢þ
>WENV182864196
OKQA01000666
[OKQA] human gut metagenome; human gut
135
60
-
Lys
TTT
[ENA]
¢þ
>WENV182864191
OKQA01000437
[OKQA] human gut metagenome; human gut
137
64
-
Arg
CCT
[ENA]
¢þ
>WENV182864193
OKQA01000467
[OKQA] human gut metagenome; human gut
140
225
+
Leu
TAA
[ENA]
¢þ
>WENV182864187
OKQA01000381
[OKQA] human gut metagenome; human gut
150
222
+
Ala
TGC
[ENA]
¢þ
>WENV182864198
OKQA01000890
[OKQA] human gut metagenome; human gut
155
64
-
Ser
GGA
[ENA]
¢þ
>WENV182864215
OKQA01002559
[OKQA] human gut metagenome; human gut
155
239
+
Tyr
GTA
[ENA]
¢þ
>WENV182864218
OKQA01002844
[OKQA] human gut metagenome; human gut
213
289
+
Arg
CCG
[ENA]
¢þ
>WENV182864194
OKQA01000467
[OKQA] human gut metagenome; human gut
240
313
+
Arg
ACG
[ENA]
¢þ
>WENV182864219
OKQA01002844
[OKQA] human gut metagenome; human gut
345
420
+
His
GTG
[ENA]
¢þ
>WENV182864216
OKQA01002559
[OKQA] human gut metagenome; human gut
355
429
+
Gly
TCC
[ENA]
¢þ
>WENV182864197
OKQA01000890
[OKQA] human gut metagenome; human gut
378
292
-
Ser
TGA
[ENA]
¢þ
>WENV182864208
OKQA01001505
[OKQA] human gut metagenome; human gut
399
473
+
His
GTG
[ENA]
¢þ
>WENV182864195
OKQA01000467
[OKQA] human gut metagenome; human gut
403
476
+
Pro
TGG
[ENA]
¢þ
>WENV182864212
OKQA01001937
[OKQA] human gut metagenome; human gut
434
524
+
Ser
CGA
[ENA]
¢þ
>WENV182864217
OKQA01002559
[OKQA] human gut metagenome; human gut
435
510
+
Thr
GGT
[ENA]
¢þ
>WENV182864220
OKQA01002844
[OKQA] human gut metagenome; human gut
444
530
+
Leu
CAG
[ENA]
¢þ
>WENV182864178
OKQA01000077
[OKQA] human gut metagenome; human gut
452
368
-
Leu
TAG
[ENA]
¢þ
>WENV182864221
OKQA01003392
[OKQA] human gut metagenome; human gut
467
395
-
Trp
CCA
[ENA]
¢þ
>WENV182864209
OKQA01001505
[OKQA] human gut metagenome; human gut
526
597
+
Gln
TTG
[ENA]
¢þ
>WENV182864177
OKQA01000077
[OKQA] human gut metagenome; human gut
542
468
-
Lys
TTT
[ENA]
¢þ
>WENV182864211
OKQA01001856
[OKQA] human gut metagenome; human gut
572
662
+
Ser
GCT
[ENA]
¢þ
>WENV182864188
OKQA01000392
[OKQA] human gut metagenome; human gut
600
671
+
Glu
TTC
[ENA]
¢þ
>WENV182864176
OKQA01000077
[OKQA] human gut metagenome; human gut
621
547
-
Val
TAC
[ENA]
¢þ
>WENV182864210
OKQA01001505
[OKQA] human gut metagenome; human gut
632
704
+
Lys
TTT
[ENA]
¢þ
>WENV182864213
OKQA01002164
[OKQA] human gut metagenome; human gut
692
608
-
Leu
AAG
[ENA]
¢þ
>WENV182864189
OKQA01000392
[OKQA] human gut metagenome; human gut
699
771
+
Cys
GCA
[ENA]
¢þ
>WENV182864207
OKQA01001030
[OKQA] human gut metagenome; human gut
850
776
-
Met
CAT
[ENA]
¢þ
>WENV182864206
OKQA01001030
[OKQA] human gut metagenome; human gut
937
863
-
Val
TAC
[ENA]
¢þ
>WENV182864205
OKQA01001030
[OKQA] human gut metagenome; human gut
1018
945
-
Asp
GTC
[ENA]
¢þ
>WENV182864199
OKQA01000900
[OKQA] human gut metagenome; human gut
1024
950
-
Ile2
CAT
[ENA]
¢þ
>WENV182864190
OKQA01000427
[OKQA] human gut metagenome; human gut
1108
1179
+
Gln
CTG
[ENA]
¢þ
>WENV182864204
OKQA01001030
[OKQA] human gut metagenome; human gut
1111
1037
-
Ile2
CAT
[ENA]
¢þ
>WENV182864186
OKQA01000280
[OKQA] human gut metagenome; human gut
1134
1209
+
Glu
TTC
[ENA]
¢þ
>WENV182864200
OKQA01001029
[OKQA] human gut metagenome; human gut
1161
1236
+
His
GTG
[ENA]
¢þ
>WENV182864203
OKQA01001030
[OKQA] human gut metagenome; human gut
1214
1142
-
Thr
TGT
[ENA]
¢þ
>WENV182864201
OKQA01001029
[OKQA] human gut metagenome; human gut
1261
1335
+
Gln
TTG
[ENA]
¢þ
>WENV182864202
OKQA01001030
[OKQA] human gut metagenome; human gut
1325
1244
-
Tyr
GTA
[ENA]
¢þ
>WENV182864181
OKQA01000104
[OKQA] human gut metagenome; human gut
1540
1613
+
Asn
GTT
[ENA]
¢þ
>WENV182864185
OKQA01000273
[OKQA] human gut metagenome; human gut
2492
2422
-
Gly
TCC
[ENA]
¢þ
>WENV182864184
OKQA01000273
[OKQA] human gut metagenome; human gut
2571
2496
-
Pro
TGG
[ENA]
¢þ
>WENV182864183
OKQA01000178
[OKQA] human gut metagenome; human gut
3095
3177
+
Leu
CAA
[ENA]
¢þ
>WENV182864182
OKQA01000127
[OKQA] human gut metagenome; human gut
3247
3334
+
Ser
GGA
[ENA]
¢þ
>WENV182864179
OKQA01000087
[OKQA] human gut metagenome; human gut
3867
3941
+
Gly
GCC
[ENA]
¢þ
>WENV182864180
OKQA01000087
[OKQA] human gut metagenome; human gut
3949
4024
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK